Experiment: Starch (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13815 and ABZR88_RS13820 are separated by 1 nucleotides ABZR88_RS13820 and ABZR88_RS13825 are separated by 24 nucleotides ABZR88_RS13825 and ABZR88_RS13830 are separated by 404 nucleotides
ABZR88_RS13815: ABZR88_RS13815 - penicillin acylase family protein, at 3,447,807 to 3,450,242
_RS13815
ABZR88_RS13820: ABZR88_RS13820 - hypothetical protein, at 3,450,244 to 3,450,579
_RS13820
ABZR88_RS13825: ABZR88_RS13825 - hypothetical protein, at 3,450,604 to 3,451,224
_RS13825
ABZR88_RS13830: ABZR88_RS13830 - ABC transporter ATP-binding protein, at 3,451,629 to 3,452,351
_RS13830
Position (kb)
3450
3451
3452 Strain fitness (log2 ratio)
-2
-1
0
1 at 3449.664 kb on - strand, within ABZR88_RS13815 at 3449.731 kb on + strand, within ABZR88_RS13815 at 3449.867 kb on + strand, within ABZR88_RS13815 at 3449.903 kb on + strand, within ABZR88_RS13815 at 3449.925 kb on - strand, within ABZR88_RS13815 at 3450.088 kb on - strand at 3450.129 kb on - strand at 3450.260 kb on + strand at 3450.316 kb on - strand, within ABZR88_RS13820 at 3450.337 kb on + strand, within ABZR88_RS13820 at 3450.395 kb on + strand, within ABZR88_RS13820 at 3450.492 kb on - strand, within ABZR88_RS13820 at 3450.639 kb on - strand at 3450.652 kb on + strand at 3450.683 kb on - strand, within ABZR88_RS13825 at 3450.775 kb on + strand, within ABZR88_RS13825 at 3450.897 kb on - strand, within ABZR88_RS13825 at 3450.960 kb on - strand, within ABZR88_RS13825 at 3451.169 kb on - strand at 3451.385 kb on - strand at 3451.519 kb on - strand at 3451.519 kb on - strand at 3451.562 kb on - strand at 3451.585 kb on - strand at 3451.604 kb on - strand at 3451.631 kb on - strand at 3451.769 kb on + strand, within ABZR88_RS13830 at 3451.872 kb on - strand, within ABZR88_RS13830
Per-strain Table
Position Strand Gene LocusTag Fraction Starch (C) remove 3,449,664 - ABZR88_RS13815 0.76 -0.0 3,449,731 + ABZR88_RS13815 0.79 +0.2 3,449,867 + ABZR88_RS13815 0.85 +1.6 3,449,903 + ABZR88_RS13815 0.86 +0.8 3,449,925 - ABZR88_RS13815 0.87 -1.0 3,450,088 - -0.2 3,450,129 - +0.5 3,450,260 + -0.4 3,450,316 - ABZR88_RS13820 0.21 +1.6 3,450,337 + ABZR88_RS13820 0.28 -0.5 3,450,395 + ABZR88_RS13820 0.45 -0.3 3,450,492 - ABZR88_RS13820 0.74 -0.2 3,450,639 - +0.1 3,450,652 + -0.1 3,450,683 - ABZR88_RS13825 0.13 -0.3 3,450,775 + ABZR88_RS13825 0.28 +0.2 3,450,897 - ABZR88_RS13825 0.47 +0.1 3,450,960 - ABZR88_RS13825 0.57 +0.6 3,451,169 - +0.3 3,451,385 - -0.6 3,451,519 - -0.4 3,451,519 - +0.5 3,451,562 - +0.2 3,451,585 - -2.7 3,451,604 - +0.7 3,451,631 - +0.0 3,451,769 + ABZR88_RS13830 0.19 -0.1 3,451,872 - ABZR88_RS13830 0.34 -0.2
Or see this region's nucleotide sequence