Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13825

Experiment: Starch (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13815 and ABZR88_RS13820 are separated by 1 nucleotidesABZR88_RS13820 and ABZR88_RS13825 are separated by 24 nucleotidesABZR88_RS13825 and ABZR88_RS13830 are separated by 404 nucleotides ABZR88_RS13815: ABZR88_RS13815 - penicillin acylase family protein, at 3,447,807 to 3,450,242 _RS13815 ABZR88_RS13820: ABZR88_RS13820 - hypothetical protein, at 3,450,244 to 3,450,579 _RS13820 ABZR88_RS13825: ABZR88_RS13825 - hypothetical protein, at 3,450,604 to 3,451,224 _RS13825 ABZR88_RS13830: ABZR88_RS13830 - ABC transporter ATP-binding protein, at 3,451,629 to 3,452,351 _RS13830 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -2 -1 0 1at 3449.664 kb on - strand, within ABZR88_RS13815at 3449.731 kb on + strand, within ABZR88_RS13815at 3449.867 kb on + strand, within ABZR88_RS13815at 3449.903 kb on + strand, within ABZR88_RS13815at 3449.925 kb on - strand, within ABZR88_RS13815at 3450.088 kb on - strandat 3450.129 kb on - strandat 3450.260 kb on + strandat 3450.316 kb on - strand, within ABZR88_RS13820at 3450.337 kb on + strand, within ABZR88_RS13820at 3450.395 kb on + strand, within ABZR88_RS13820at 3450.492 kb on - strand, within ABZR88_RS13820at 3450.639 kb on - strandat 3450.652 kb on + strandat 3450.683 kb on - strand, within ABZR88_RS13825at 3450.775 kb on + strand, within ABZR88_RS13825at 3450.897 kb on - strand, within ABZR88_RS13825at 3450.960 kb on - strand, within ABZR88_RS13825at 3451.169 kb on - strandat 3451.385 kb on - strandat 3451.519 kb on - strandat 3451.519 kb on - strandat 3451.562 kb on - strandat 3451.585 kb on - strandat 3451.604 kb on - strandat 3451.631 kb on - strandat 3451.769 kb on + strand, within ABZR88_RS13830at 3451.872 kb on - strand, within ABZR88_RS13830

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Per-strain Table

Position Strand Gene LocusTag Fraction Starch (C)
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3,449,664 - ABZR88_RS13815 0.76 -0.0
3,449,731 + ABZR88_RS13815 0.79 +0.2
3,449,867 + ABZR88_RS13815 0.85 +1.6
3,449,903 + ABZR88_RS13815 0.86 +0.8
3,449,925 - ABZR88_RS13815 0.87 -1.0
3,450,088 - -0.2
3,450,129 - +0.5
3,450,260 + -0.4
3,450,316 - ABZR88_RS13820 0.21 +1.6
3,450,337 + ABZR88_RS13820 0.28 -0.5
3,450,395 + ABZR88_RS13820 0.45 -0.3
3,450,492 - ABZR88_RS13820 0.74 -0.2
3,450,639 - +0.1
3,450,652 + -0.1
3,450,683 - ABZR88_RS13825 0.13 -0.3
3,450,775 + ABZR88_RS13825 0.28 +0.2
3,450,897 - ABZR88_RS13825 0.47 +0.1
3,450,960 - ABZR88_RS13825 0.57 +0.6
3,451,169 - +0.3
3,451,385 - -0.6
3,451,519 - -0.4
3,451,519 - +0.5
3,451,562 - +0.2
3,451,585 - -2.7
3,451,604 - +0.7
3,451,631 - +0.0
3,451,769 + ABZR88_RS13830 0.19 -0.1
3,451,872 - ABZR88_RS13830 0.34 -0.2

Or see this region's nucleotide sequence