Experiment: Starch (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS03170 and ABZR88_RS03175 are separated by 0 nucleotides ABZR88_RS03175 and ABZR88_RS03180 overlap by 4 nucleotides ABZR88_RS03180 and ABZR88_RS03185 are separated by 257 nucleotides
ABZR88_RS03170: ABZR88_RS03170 - glycoside hydrolase family 88 protein, at 764,221 to 765,426
_RS03170
ABZR88_RS03175: ABZR88_RS03175 - family 43 glycosylhydrolase, at 765,427 to 766,377
_RS03175
ABZR88_RS03180: ABZR88_RS03180 - DUF2264 domain-containing protein, at 766,374 to 767,606
_RS03180
ABZR88_RS03185: ABZR88_RS03185 - efflux RND transporter periplasmic adaptor subunit, at 767,864 to 768,952
_RS03185
Position (kb) 766
767
768 Strain fitness (log2 ratio) -1
0
1 at 765.755 kb on - strand, within ABZR88_RS03175 at 765.986 kb on + strand, within ABZR88_RS03175 at 766.108 kb on - strand, within ABZR88_RS03175 at 766.218 kb on + strand, within ABZR88_RS03175 at 766.324 kb on - strand at 766.324 kb on - strand at 766.384 kb on + strand at 766.397 kb on - strand at 766.862 kb on - strand, within ABZR88_RS03180 at 767.163 kb on - strand, within ABZR88_RS03180 at 767.248 kb on - strand, within ABZR88_RS03180 at 767.412 kb on + strand, within ABZR88_RS03180 at 767.445 kb on - strand, within ABZR88_RS03180 at 767.445 kb on - strand, within ABZR88_RS03180 at 767.445 kb on - strand, within ABZR88_RS03180 at 767.447 kb on + strand, within ABZR88_RS03180 at 767.604 kb on + strand at 767.611 kb on - strand at 767.716 kb on + strand at 767.716 kb on + strand at 767.846 kb on - strand at 767.866 kb on - strand at 768.212 kb on - strand, within ABZR88_RS03185 at 768.221 kb on - strand, within ABZR88_RS03185 at 768.248 kb on + strand, within ABZR88_RS03185 at 768.248 kb on + strand, within ABZR88_RS03185 at 768.294 kb on + strand, within ABZR88_RS03185 at 768.314 kb on - strand, within ABZR88_RS03185 at 768.389 kb on - strand, within ABZR88_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction Starch (C) remove 765,755 - ABZR88_RS03175 0.34 +0.1 765,986 + ABZR88_RS03175 0.59 -0.0 766,108 - ABZR88_RS03175 0.72 +1.1 766,218 + ABZR88_RS03175 0.83 +0.0 766,324 - -0.1 766,324 - +0.5 766,384 + +0.3 766,397 - +0.2 766,862 - ABZR88_RS03180 0.40 +0.1 767,163 - ABZR88_RS03180 0.64 -0.0 767,248 - ABZR88_RS03180 0.71 -0.0 767,412 + ABZR88_RS03180 0.84 +0.4 767,445 - ABZR88_RS03180 0.87 -0.1 767,445 - ABZR88_RS03180 0.87 -0.3 767,445 - ABZR88_RS03180 0.87 -0.1 767,447 + ABZR88_RS03180 0.87 +0.5 767,604 + -0.5 767,611 - -0.0 767,716 + -0.7 767,716 + +0.2 767,846 - -0.0 767,866 - -0.1 768,212 - ABZR88_RS03185 0.32 +0.5 768,221 - ABZR88_RS03185 0.33 +0.6 768,248 + ABZR88_RS03185 0.35 -1.1 768,248 + ABZR88_RS03185 0.35 -0.5 768,294 + ABZR88_RS03185 0.39 +0.2 768,314 - ABZR88_RS03185 0.41 -0.1 768,389 - ABZR88_RS03185 0.48 +1.0
Or see this region's nucleotide sequence