Experiment: Starch (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02865 and ABZR88_RS02870 are separated by 178 nucleotides ABZR88_RS02870 and ABZR88_RS02875 are separated by 47 nucleotides ABZR88_RS02875 and ABZR88_RS02880 are separated by 39 nucleotides
ABZR88_RS02865: ABZR88_RS02865 - hypothetical protein, at 679,702 to 680,193
_RS02865
ABZR88_RS02870: ABZR88_RS02870 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 680,372 to 681,112
_RS02870
ABZR88_RS02875: ABZR88_RS02875 - DUF92 domain-containing protein, at 681,160 to 681,864
_RS02875
ABZR88_RS02880: ABZR88_RS02880 - glycoside hydrolase family 25 protein, at 681,904 to 682,806
_RS02880
Position (kb) 681
682 Strain fitness (log2 ratio) -2
-1
0
1 at 680.222 kb on + strand at 680.251 kb on - strand at 680.434 kb on - strand at 680.544 kb on + strand, within ABZR88_RS02870 at 680.544 kb on + strand, within ABZR88_RS02870 at 680.804 kb on - strand, within ABZR88_RS02870 at 680.950 kb on + strand, within ABZR88_RS02870 at 681.001 kb on + strand, within ABZR88_RS02870 at 681.345 kb on + strand, within ABZR88_RS02875 at 681.496 kb on - strand, within ABZR88_RS02875 at 681.687 kb on + strand, within ABZR88_RS02875 at 681.688 kb on - strand, within ABZR88_RS02875 at 681.796 kb on - strand at 681.899 kb on - strand at 682.062 kb on - strand, within ABZR88_RS02880 at 682.088 kb on - strand, within ABZR88_RS02880 at 682.132 kb on - strand, within ABZR88_RS02880 at 682.484 kb on + strand, within ABZR88_RS02880 at 682.484 kb on + strand, within ABZR88_RS02880 at 682.569 kb on - strand, within ABZR88_RS02880 at 682.597 kb on + strand, within ABZR88_RS02880 at 682.677 kb on - strand, within ABZR88_RS02880 at 682.831 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Starch (C) remove 680,222 + +0.1 680,251 - +0.1 680,434 - -2.5 680,544 + ABZR88_RS02870 0.23 +0.9 680,544 + ABZR88_RS02870 0.23 +0.1 680,804 - ABZR88_RS02870 0.58 -0.3 680,950 + ABZR88_RS02870 0.78 -0.8 681,001 + ABZR88_RS02870 0.85 +0.0 681,345 + ABZR88_RS02875 0.26 +0.0 681,496 - ABZR88_RS02875 0.48 -0.8 681,687 + ABZR88_RS02875 0.75 +0.1 681,688 - ABZR88_RS02875 0.75 -0.5 681,796 - -0.6 681,899 - +0.2 682,062 - ABZR88_RS02880 0.17 -0.8 682,088 - ABZR88_RS02880 0.20 -0.1 682,132 - ABZR88_RS02880 0.25 -0.2 682,484 + ABZR88_RS02880 0.64 +0.5 682,484 + ABZR88_RS02880 0.64 +0.2 682,569 - ABZR88_RS02880 0.74 -1.8 682,597 + ABZR88_RS02880 0.77 -0.1 682,677 - ABZR88_RS02880 0.86 -0.1 682,831 - -0.4
Or see this region's nucleotide sequence