Experiment: Starch (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00090 and ABZR88_RS00095 are separated by 4 nucleotides ABZR88_RS00095 and ABZR88_RS00100 are separated by 54 nucleotides ABZR88_RS00100 and ABZR88_RS00105 are separated by 45 nucleotides ABZR88_RS00105 and ABZR88_RS00110 are separated by 128 nucleotides
ABZR88_RS00090: ABZR88_RS00090 - sigma-54 dependent transcriptional regulator, at 17,340 to 18,770
_RS00090
ABZR88_RS00095: ABZR88_RS00095 - hypothetical protein, at 18,775 to 18,978
_RS00095
ABZR88_RS00100: ABZR88_RS00100 - hypothetical protein, at 19,033 to 19,305
_RS00100
ABZR88_RS00105: ABZR88_RS00105 - hypothetical protein, at 19,351 to 19,488
_RS00105
ABZR88_RS00110: ABZR88_RS00110 - hypothetical protein, at 19,617 to 20,174
_RS00110
Position (kb) 18
19 Strain fitness (log2 ratio) -1
0
1
2 at 17.853 kb on + strand, within ABZR88_RS00090 at 17.861 kb on - strand, within ABZR88_RS00090 at 18.031 kb on + strand, within ABZR88_RS00090 at 18.031 kb on + strand, within ABZR88_RS00090 at 18.152 kb on - strand, within ABZR88_RS00090 at 18.198 kb on - strand, within ABZR88_RS00090 at 18.289 kb on - strand, within ABZR88_RS00090 at 18.320 kb on + strand, within ABZR88_RS00090 at 18.320 kb on + strand, within ABZR88_RS00090 at 18.321 kb on - strand, within ABZR88_RS00090 at 18.550 kb on + strand, within ABZR88_RS00090 at 18.738 kb on + strand at 18.919 kb on + strand, within ABZR88_RS00095 at 19.397 kb on + strand, within ABZR88_RS00105 at 19.432 kb on - strand, within ABZR88_RS00105 at 19.531 kb on + strand at 19.533 kb on + strand at 19.611 kb on + strand at 19.641 kb on - strand at 19.824 kb on + strand, within ABZR88_RS00110 at 19.888 kb on + strand, within ABZR88_RS00110 at 19.968 kb on - strand, within ABZR88_RS00110
Per-strain Table
Position Strand Gene LocusTag Fraction Starch (C) remove 17,853 + ABZR88_RS00090 0.36 -0.5 17,861 - ABZR88_RS00090 0.36 +1.0 18,031 + ABZR88_RS00090 0.48 -0.8 18,031 + ABZR88_RS00090 0.48 -1.0 18,152 - ABZR88_RS00090 0.57 -0.3 18,198 - ABZR88_RS00090 0.60 +1.0 18,289 - ABZR88_RS00090 0.66 -0.1 18,320 + ABZR88_RS00090 0.68 -0.3 18,320 + ABZR88_RS00090 0.68 -0.3 18,321 - ABZR88_RS00090 0.69 -0.0 18,550 + ABZR88_RS00090 0.85 +1.0 18,738 + -0.0 18,919 + ABZR88_RS00095 0.71 -0.1 19,397 + ABZR88_RS00105 0.33 -0.4 19,432 - ABZR88_RS00105 0.59 -0.4 19,531 + +0.1 19,533 + -0.8 19,611 + +2.2 19,641 - -0.7 19,824 + ABZR88_RS00110 0.37 -0.1 19,888 + ABZR88_RS00110 0.49 +0.1 19,968 - ABZR88_RS00110 0.63 +1.0
Or see this region's nucleotide sequence