Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS14105

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS14095 and ABZR88_RS14100 overlap by 4 nucleotidesABZR88_RS14100 and ABZR88_RS14105 overlap by 1 nucleotidesABZR88_RS14105 and ABZR88_RS14110 are separated by 246 nucleotidesABZR88_RS14110 and ABZR88_RS14115 are separated by 22 nucleotides ABZR88_RS14095: ABZR88_RS14095 - MBL fold metallo-hydrolase, at 3,502,219 to 3,503,157 _RS14095 ABZR88_RS14100: ABZR88_RS14100 - dephospho-CoA kinase, at 3,503,154 to 3,503,744 _RS14100 ABZR88_RS14105: ABZR88_RS14105 - YbbR-like domain-containing protein, at 3,503,744 to 3,504,688 _RS14105 ABZR88_RS14110: ABZR88_RS14110 - preprotein translocase subunit YajC, at 3,504,935 to 3,505,258 _RS14110 ABZR88_RS14115: ABZR88_RS14115 - DUF1573 domain-containing protein, at 3,505,281 to 3,505,754 _RS14115 Position (kb) 3503 3504 3505Strain fitness (log2 ratio) -2 -1 0 1 2at 3502.757 kb on - strand, within ABZR88_RS14095at 3502.875 kb on + strand, within ABZR88_RS14095at 3502.890 kb on + strand, within ABZR88_RS14095at 3502.897 kb on + strand, within ABZR88_RS14095at 3502.897 kb on + strand, within ABZR88_RS14095at 3502.898 kb on - strand, within ABZR88_RS14095at 3502.899 kb on + strand, within ABZR88_RS14095at 3502.904 kb on - strand, within ABZR88_RS14095at 3502.944 kb on + strand, within ABZR88_RS14095at 3502.984 kb on - strand, within ABZR88_RS14095at 3503.114 kb on + strandat 3503.115 kb on - strandat 3503.771 kb on - strandat 3503.838 kb on + strandat 3503.913 kb on - strand, within ABZR88_RS14105at 3504.154 kb on + strand, within ABZR88_RS14105at 3504.306 kb on + strand, within ABZR88_RS14105at 3504.307 kb on - strand, within ABZR88_RS14105at 3504.393 kb on + strand, within ABZR88_RS14105at 3504.398 kb on - strand, within ABZR88_RS14105at 3504.398 kb on - strand, within ABZR88_RS14105at 3504.398 kb on - strand, within ABZR88_RS14105at 3504.413 kb on - strand, within ABZR88_RS14105at 3504.573 kb on + strand, within ABZR88_RS14105at 3504.577 kb on + strand, within ABZR88_RS14105at 3504.579 kb on + strand, within ABZR88_RS14105at 3504.580 kb on - strand, within ABZR88_RS14105at 3504.634 kb on + strandat 3504.634 kb on - strandat 3504.710 kb on + strandat 3504.730 kb on - strandat 3504.743 kb on + strandat 3504.789 kb on - strandat 3504.808 kb on - strandat 3505.113 kb on - strand, within ABZR88_RS14110at 3505.177 kb on - strand, within ABZR88_RS14110at 3505.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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3,502,757 - ABZR88_RS14095 0.57 -0.6
3,502,875 + ABZR88_RS14095 0.70 +0.3
3,502,890 + ABZR88_RS14095 0.71 +0.6
3,502,897 + ABZR88_RS14095 0.72 +0.1
3,502,897 + ABZR88_RS14095 0.72 +1.0
3,502,898 - ABZR88_RS14095 0.72 -0.2
3,502,899 + ABZR88_RS14095 0.72 +0.1
3,502,904 - ABZR88_RS14095 0.73 +1.6
3,502,944 + ABZR88_RS14095 0.77 -0.2
3,502,984 - ABZR88_RS14095 0.81 -0.3
3,503,114 + +0.6
3,503,115 - +0.3
3,503,771 - -0.2
3,503,838 + -0.1
3,503,913 - ABZR88_RS14105 0.18 +2.0
3,504,154 + ABZR88_RS14105 0.43 +0.2
3,504,306 + ABZR88_RS14105 0.59 -0.1
3,504,307 - ABZR88_RS14105 0.60 -0.5
3,504,393 + ABZR88_RS14105 0.69 -2.3
3,504,398 - ABZR88_RS14105 0.69 -0.1
3,504,398 - ABZR88_RS14105 0.69 -0.3
3,504,398 - ABZR88_RS14105 0.69 -0.2
3,504,413 - ABZR88_RS14105 0.71 -0.6
3,504,573 + ABZR88_RS14105 0.88 +0.4
3,504,577 + ABZR88_RS14105 0.88 -0.3
3,504,579 + ABZR88_RS14105 0.88 -0.7
3,504,580 - ABZR88_RS14105 0.88 +0.2
3,504,634 + -0.5
3,504,634 - +0.1
3,504,710 + -1.4
3,504,730 - +0.5
3,504,743 + +0.3
3,504,789 - -0.4
3,504,808 - -0.2
3,505,113 - ABZR88_RS14110 0.55 -2.5
3,505,177 - ABZR88_RS14110 0.75 +0.1
3,505,297 - -0.3

Or see this region's nucleotide sequence