Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS14095 and ABZR88_RS14100 overlap by 4 nucleotides ABZR88_RS14100 and ABZR88_RS14105 overlap by 1 nucleotides ABZR88_RS14105 and ABZR88_RS14110 are separated by 246 nucleotides ABZR88_RS14110 and ABZR88_RS14115 are separated by 22 nucleotides
ABZR88_RS14095: ABZR88_RS14095 - MBL fold metallo-hydrolase, at 3,502,219 to 3,503,157
_RS14095
ABZR88_RS14100: ABZR88_RS14100 - dephospho-CoA kinase, at 3,503,154 to 3,503,744
_RS14100
ABZR88_RS14105: ABZR88_RS14105 - YbbR-like domain-containing protein, at 3,503,744 to 3,504,688
_RS14105
ABZR88_RS14110: ABZR88_RS14110 - preprotein translocase subunit YajC, at 3,504,935 to 3,505,258
_RS14110
ABZR88_RS14115: ABZR88_RS14115 - DUF1573 domain-containing protein, at 3,505,281 to 3,505,754
_RS14115
Position (kb)
3503
3504
3505 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3502.757 kb on - strand, within ABZR88_RS14095 at 3502.875 kb on + strand, within ABZR88_RS14095 at 3502.890 kb on + strand, within ABZR88_RS14095 at 3502.897 kb on + strand, within ABZR88_RS14095 at 3502.897 kb on + strand, within ABZR88_RS14095 at 3502.898 kb on - strand, within ABZR88_RS14095 at 3502.899 kb on + strand, within ABZR88_RS14095 at 3502.904 kb on - strand, within ABZR88_RS14095 at 3502.944 kb on + strand, within ABZR88_RS14095 at 3502.984 kb on - strand, within ABZR88_RS14095 at 3503.114 kb on + strand at 3503.115 kb on - strand at 3503.771 kb on - strand at 3503.838 kb on + strand at 3503.913 kb on - strand, within ABZR88_RS14105 at 3504.154 kb on + strand, within ABZR88_RS14105 at 3504.306 kb on + strand, within ABZR88_RS14105 at 3504.307 kb on - strand, within ABZR88_RS14105 at 3504.393 kb on + strand, within ABZR88_RS14105 at 3504.398 kb on - strand, within ABZR88_RS14105 at 3504.398 kb on - strand, within ABZR88_RS14105 at 3504.398 kb on - strand, within ABZR88_RS14105 at 3504.413 kb on - strand, within ABZR88_RS14105 at 3504.573 kb on + strand, within ABZR88_RS14105 at 3504.577 kb on + strand, within ABZR88_RS14105 at 3504.579 kb on + strand, within ABZR88_RS14105 at 3504.580 kb on - strand, within ABZR88_RS14105 at 3504.634 kb on + strand at 3504.634 kb on - strand at 3504.710 kb on + strand at 3504.730 kb on - strand at 3504.743 kb on + strand at 3504.789 kb on - strand at 3504.808 kb on - strand at 3505.113 kb on - strand, within ABZR88_RS14110 at 3505.177 kb on - strand, within ABZR88_RS14110 at 3505.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 3,502,757 - ABZR88_RS14095 0.57 -0.6 3,502,875 + ABZR88_RS14095 0.70 +0.3 3,502,890 + ABZR88_RS14095 0.71 +0.6 3,502,897 + ABZR88_RS14095 0.72 +0.1 3,502,897 + ABZR88_RS14095 0.72 +1.0 3,502,898 - ABZR88_RS14095 0.72 -0.2 3,502,899 + ABZR88_RS14095 0.72 +0.1 3,502,904 - ABZR88_RS14095 0.73 +1.6 3,502,944 + ABZR88_RS14095 0.77 -0.2 3,502,984 - ABZR88_RS14095 0.81 -0.3 3,503,114 + +0.6 3,503,115 - +0.3 3,503,771 - -0.2 3,503,838 + -0.1 3,503,913 - ABZR88_RS14105 0.18 +2.0 3,504,154 + ABZR88_RS14105 0.43 +0.2 3,504,306 + ABZR88_RS14105 0.59 -0.1 3,504,307 - ABZR88_RS14105 0.60 -0.5 3,504,393 + ABZR88_RS14105 0.69 -2.3 3,504,398 - ABZR88_RS14105 0.69 -0.1 3,504,398 - ABZR88_RS14105 0.69 -0.3 3,504,398 - ABZR88_RS14105 0.69 -0.2 3,504,413 - ABZR88_RS14105 0.71 -0.6 3,504,573 + ABZR88_RS14105 0.88 +0.4 3,504,577 + ABZR88_RS14105 0.88 -0.3 3,504,579 + ABZR88_RS14105 0.88 -0.7 3,504,580 - ABZR88_RS14105 0.88 +0.2 3,504,634 + -0.5 3,504,634 - +0.1 3,504,710 + -1.4 3,504,730 - +0.5 3,504,743 + +0.3 3,504,789 - -0.4 3,504,808 - -0.2 3,505,113 - ABZR88_RS14110 0.55 -2.5 3,505,177 - ABZR88_RS14110 0.75 +0.1 3,505,297 - -0.3
Or see this region's nucleotide sequence