Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09885 and ABZR88_RS09890 are separated by 96 nucleotides ABZR88_RS09890 and ABZR88_RS09895 are separated by 19 nucleotides ABZR88_RS09895 and ABZR88_RS09900 are separated by 121 nucleotides ABZR88_RS09900 and ABZR88_RS09905 are separated by 89 nucleotides
ABZR88_RS09885: ABZR88_RS09885 - hypothetical protein, at 2,456,894 to 2,457,181
_RS09885
ABZR88_RS09890: ABZR88_RS09890 - HAD family hydrolase, at 2,457,278 to 2,457,925
_RS09890
ABZR88_RS09895: ABZR88_RS09895 - riboflavin synthase, at 2,457,945 to 2,458,529
_RS09895
ABZR88_RS09900: ABZR88_RS09900 - SRPBCC domain-containing protein, at 2,458,651 to 2,459,151
_RS09900
ABZR88_RS09905: ABZR88_RS09905 - NUDIX domain-containing protein, at 2,459,241 to 2,459,702
_RS09905
Position (kb)
2457
2458
2459 Strain fitness (log2 ratio)
-1
0
1
2 at 2456.996 kb on - strand, within ABZR88_RS09885 at 2457.074 kb on + strand, within ABZR88_RS09885 at 2457.182 kb on - strand at 2457.182 kb on - strand at 2457.228 kb on + strand at 2457.288 kb on - strand at 2457.455 kb on + strand, within ABZR88_RS09890 at 2457.515 kb on - strand, within ABZR88_RS09890 at 2457.515 kb on - strand, within ABZR88_RS09890 at 2457.608 kb on - strand, within ABZR88_RS09890 at 2457.623 kb on + strand, within ABZR88_RS09890 at 2457.666 kb on - strand, within ABZR88_RS09890 at 2457.716 kb on + strand, within ABZR88_RS09890 at 2457.720 kb on + strand, within ABZR88_RS09890 at 2457.799 kb on + strand, within ABZR88_RS09890 at 2457.800 kb on - strand, within ABZR88_RS09890 at 2457.860 kb on + strand, within ABZR88_RS09890 at 2458.594 kb on + strand at 2458.594 kb on + strand at 2458.611 kb on + strand at 2458.662 kb on + strand at 2458.699 kb on - strand at 2458.847 kb on + strand, within ABZR88_RS09900 at 2458.847 kb on + strand, within ABZR88_RS09900 at 2459.103 kb on - strand at 2459.230 kb on + strand at 2459.397 kb on - strand, within ABZR88_RS09905 at 2459.438 kb on + strand, within ABZR88_RS09905
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 2,456,996 - ABZR88_RS09885 0.35 -0.9 2,457,074 + ABZR88_RS09885 0.62 +0.7 2,457,182 - -0.1 2,457,182 - +1.9 2,457,228 + +0.7 2,457,288 - +0.0 2,457,455 + ABZR88_RS09890 0.27 -0.1 2,457,515 - ABZR88_RS09890 0.37 -0.7 2,457,515 - ABZR88_RS09890 0.37 +0.2 2,457,608 - ABZR88_RS09890 0.51 +1.9 2,457,623 + ABZR88_RS09890 0.53 -0.7 2,457,666 - ABZR88_RS09890 0.60 +0.2 2,457,716 + ABZR88_RS09890 0.68 +0.0 2,457,720 + ABZR88_RS09890 0.68 +0.3 2,457,799 + ABZR88_RS09890 0.80 +0.2 2,457,800 - ABZR88_RS09890 0.81 +1.4 2,457,860 + ABZR88_RS09890 0.90 +0.3 2,458,594 + -0.2 2,458,594 + +0.1 2,458,611 + +0.4 2,458,662 + +0.5 2,458,699 - -0.6 2,458,847 + ABZR88_RS09900 0.39 +0.1 2,458,847 + ABZR88_RS09900 0.39 +0.6 2,459,103 - +0.1 2,459,230 + +0.9 2,459,397 - ABZR88_RS09905 0.34 -0.3 2,459,438 + ABZR88_RS09905 0.43 +0.1
Or see this region's nucleotide sequence