Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09895

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09885 and ABZR88_RS09890 are separated by 96 nucleotidesABZR88_RS09890 and ABZR88_RS09895 are separated by 19 nucleotidesABZR88_RS09895 and ABZR88_RS09900 are separated by 121 nucleotidesABZR88_RS09900 and ABZR88_RS09905 are separated by 89 nucleotides ABZR88_RS09885: ABZR88_RS09885 - hypothetical protein, at 2,456,894 to 2,457,181 _RS09885 ABZR88_RS09890: ABZR88_RS09890 - HAD family hydrolase, at 2,457,278 to 2,457,925 _RS09890 ABZR88_RS09895: ABZR88_RS09895 - riboflavin synthase, at 2,457,945 to 2,458,529 _RS09895 ABZR88_RS09900: ABZR88_RS09900 - SRPBCC domain-containing protein, at 2,458,651 to 2,459,151 _RS09900 ABZR88_RS09905: ABZR88_RS09905 - NUDIX domain-containing protein, at 2,459,241 to 2,459,702 _RS09905 Position (kb) 2457 2458 2459Strain fitness (log2 ratio) -1 0 1 2at 2456.996 kb on - strand, within ABZR88_RS09885at 2457.074 kb on + strand, within ABZR88_RS09885at 2457.182 kb on - strandat 2457.182 kb on - strandat 2457.228 kb on + strandat 2457.288 kb on - strandat 2457.455 kb on + strand, within ABZR88_RS09890at 2457.515 kb on - strand, within ABZR88_RS09890at 2457.515 kb on - strand, within ABZR88_RS09890at 2457.608 kb on - strand, within ABZR88_RS09890at 2457.623 kb on + strand, within ABZR88_RS09890at 2457.666 kb on - strand, within ABZR88_RS09890at 2457.716 kb on + strand, within ABZR88_RS09890at 2457.720 kb on + strand, within ABZR88_RS09890at 2457.799 kb on + strand, within ABZR88_RS09890at 2457.800 kb on - strand, within ABZR88_RS09890at 2457.860 kb on + strand, within ABZR88_RS09890at 2458.594 kb on + strandat 2458.594 kb on + strandat 2458.611 kb on + strandat 2458.662 kb on + strandat 2458.699 kb on - strandat 2458.847 kb on + strand, within ABZR88_RS09900at 2458.847 kb on + strand, within ABZR88_RS09900at 2459.103 kb on - strandat 2459.230 kb on + strandat 2459.397 kb on - strand, within ABZR88_RS09905at 2459.438 kb on + strand, within ABZR88_RS09905

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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2,456,996 - ABZR88_RS09885 0.35 -0.9
2,457,074 + ABZR88_RS09885 0.62 +0.7
2,457,182 - -0.1
2,457,182 - +1.9
2,457,228 + +0.7
2,457,288 - +0.0
2,457,455 + ABZR88_RS09890 0.27 -0.1
2,457,515 - ABZR88_RS09890 0.37 -0.7
2,457,515 - ABZR88_RS09890 0.37 +0.2
2,457,608 - ABZR88_RS09890 0.51 +1.9
2,457,623 + ABZR88_RS09890 0.53 -0.7
2,457,666 - ABZR88_RS09890 0.60 +0.2
2,457,716 + ABZR88_RS09890 0.68 +0.0
2,457,720 + ABZR88_RS09890 0.68 +0.3
2,457,799 + ABZR88_RS09890 0.80 +0.2
2,457,800 - ABZR88_RS09890 0.81 +1.4
2,457,860 + ABZR88_RS09890 0.90 +0.3
2,458,594 + -0.2
2,458,594 + +0.1
2,458,611 + +0.4
2,458,662 + +0.5
2,458,699 - -0.6
2,458,847 + ABZR88_RS09900 0.39 +0.1
2,458,847 + ABZR88_RS09900 0.39 +0.6
2,459,103 - +0.1
2,459,230 + +0.9
2,459,397 - ABZR88_RS09905 0.34 -0.3
2,459,438 + ABZR88_RS09905 0.43 +0.1

Or see this region's nucleotide sequence