Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS18730 and ABZR88_RS18735 are separated by 54 nucleotides ABZR88_RS18735 and ABZR88_RS18740 are separated by 9 nucleotides ABZR88_RS18740 and ABZR88_RS18745 overlap by 18 nucleotides ABZR88_RS18745 and ABZR88_RS18750 are separated by 89 nucleotides
ABZR88_RS18730: ABZR88_RS18730 - glutamate--tRNA ligase, at 4,582,378 to 4,583,898
_RS18730
ABZR88_RS18735: ABZR88_RS18735 - hypothetical protein, at 4,583,953 to 4,584,183
_RS18735
ABZR88_RS18740: ABZR88_RS18740 - putative toxin-antitoxin system toxin component, PIN family, at 4,584,193 to 4,584,597
_RS18740
ABZR88_RS18745: ABZR88_RS18745 - TfoX/Sxy family protein, at 4,584,580 to 4,584,960
_RS18745
ABZR88_RS18750: ABZR88_RS18750 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 4,585,050 to 4,586,366
_RS18750
Position (kb) 4584
4585 Strain fitness (log2 ratio) -1
0
1 at 4583.901 kb on - strand at 4584.419 kb on - strand, within ABZR88_RS18740 at 4584.479 kb on + strand, within ABZR88_RS18740 at 4584.479 kb on + strand, within ABZR88_RS18740 at 4584.671 kb on - strand, within ABZR88_RS18745 at 4584.716 kb on - strand, within ABZR88_RS18745 at 4584.751 kb on + strand, within ABZR88_RS18745 at 4584.808 kb on - strand, within ABZR88_RS18745 at 4585.070 kb on - strand at 4585.187 kb on + strand, within ABZR88_RS18750 at 4585.283 kb on + strand, within ABZR88_RS18750 at 4585.375 kb on + strand, within ABZR88_RS18750 at 4585.447 kb on + strand, within ABZR88_RS18750 at 4585.448 kb on - strand, within ABZR88_RS18750 at 4585.448 kb on - strand, within ABZR88_RS18750 at 4585.452 kb on - strand, within ABZR88_RS18750 at 4585.466 kb on + strand, within ABZR88_RS18750 at 4585.569 kb on - strand, within ABZR88_RS18750
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 4,583,901 - -0.9 4,584,419 - ABZR88_RS18740 0.56 +0.1 4,584,479 + ABZR88_RS18740 0.71 +0.2 4,584,479 + ABZR88_RS18740 0.71 +0.4 4,584,671 - ABZR88_RS18745 0.24 -1.0 4,584,716 - ABZR88_RS18745 0.36 -0.6 4,584,751 + ABZR88_RS18745 0.45 -0.5 4,584,808 - ABZR88_RS18745 0.60 +0.5 4,585,070 - -0.9 4,585,187 + ABZR88_RS18750 0.10 +0.4 4,585,283 + ABZR88_RS18750 0.18 -0.2 4,585,375 + ABZR88_RS18750 0.25 -0.2 4,585,447 + ABZR88_RS18750 0.30 -0.6 4,585,448 - ABZR88_RS18750 0.30 -0.2 4,585,448 - ABZR88_RS18750 0.30 -0.2 4,585,452 - ABZR88_RS18750 0.31 +0.1 4,585,466 + ABZR88_RS18750 0.32 -0.0 4,585,569 - ABZR88_RS18750 0.39 -0.6
Or see this region's nucleotide sequence