Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13045

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS13040 and ABZR88_RS13045 overlap by 1 nucleotidesABZR88_RS13045 and ABZR88_RS13050 are separated by 8 nucleotides ABZR88_RS13040: ABZR88_RS13040 - glucuronate isomerase, at 3,221,598 to 3,223,010 _RS13040 ABZR88_RS13045: ABZR88_RS13045 - enolase C-terminal domain-like protein, at 3,223,010 to 3,224,137 _RS13045 ABZR88_RS13050: ABZR88_RS13050 - GntR family transcriptional regulator, at 3,224,146 to 3,225,153 _RS13050 Position (kb) 3223 3224 3225Strain fitness (log2 ratio) -1 0 1at 3222.158 kb on + strand, within ABZR88_RS13040at 3222.256 kb on + strand, within ABZR88_RS13040at 3222.353 kb on - strand, within ABZR88_RS13040at 3222.468 kb on + strand, within ABZR88_RS13040at 3222.519 kb on - strand, within ABZR88_RS13040at 3222.626 kb on + strand, within ABZR88_RS13040at 3222.678 kb on - strand, within ABZR88_RS13040at 3222.794 kb on + strand, within ABZR88_RS13040at 3222.913 kb on - strandat 3222.934 kb on + strandat 3222.957 kb on + strandat 3222.990 kb on + strandat 3223.037 kb on - strandat 3223.111 kb on + strandat 3223.207 kb on + strand, within ABZR88_RS13045at 3223.237 kb on + strand, within ABZR88_RS13045at 3223.343 kb on - strand, within ABZR88_RS13045at 3223.397 kb on - strand, within ABZR88_RS13045at 3223.522 kb on + strand, within ABZR88_RS13045at 3223.540 kb on + strand, within ABZR88_RS13045at 3223.541 kb on - strand, within ABZR88_RS13045at 3223.583 kb on + strand, within ABZR88_RS13045at 3223.584 kb on - strand, within ABZR88_RS13045at 3223.584 kb on - strand, within ABZR88_RS13045at 3223.651 kb on - strand, within ABZR88_RS13045at 3223.674 kb on + strand, within ABZR88_RS13045at 3223.771 kb on - strand, within ABZR88_RS13045at 3223.948 kb on - strand, within ABZR88_RS13045at 3224.097 kb on - strandat 3224.122 kb on + strandat 3224.125 kb on + strandat 3224.158 kb on - strandat 3224.301 kb on + strand, within ABZR88_RS13050at 3224.396 kb on + strand, within ABZR88_RS13050at 3224.533 kb on + strand, within ABZR88_RS13050at 3224.738 kb on + strand, within ABZR88_RS13050at 3224.836 kb on - strand, within ABZR88_RS13050at 3224.878 kb on - strand, within ABZR88_RS13050at 3224.939 kb on + strand, within ABZR88_RS13050at 3224.939 kb on + strand, within ABZR88_RS13050at 3224.944 kb on + strand, within ABZR88_RS13050at 3225.016 kb on - strand, within ABZR88_RS13050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
3,222,158 + ABZR88_RS13040 0.40 +1.2
3,222,256 + ABZR88_RS13040 0.47 +0.2
3,222,353 - ABZR88_RS13040 0.53 -1.0
3,222,468 + ABZR88_RS13040 0.62 +0.0
3,222,519 - ABZR88_RS13040 0.65 -0.1
3,222,626 + ABZR88_RS13040 0.73 -0.2
3,222,678 - ABZR88_RS13040 0.76 -0.4
3,222,794 + ABZR88_RS13040 0.85 -0.0
3,222,913 - -1.0
3,222,934 + +0.2
3,222,957 + +0.1
3,222,990 + +0.7
3,223,037 - -0.0
3,223,111 + -0.1
3,223,207 + ABZR88_RS13045 0.17 -0.3
3,223,237 + ABZR88_RS13045 0.20 -0.3
3,223,343 - ABZR88_RS13045 0.30 -0.6
3,223,397 - ABZR88_RS13045 0.34 -0.2
3,223,522 + ABZR88_RS13045 0.45 +0.1
3,223,540 + ABZR88_RS13045 0.47 -0.3
3,223,541 - ABZR88_RS13045 0.47 -0.1
3,223,583 + ABZR88_RS13045 0.51 -0.2
3,223,584 - ABZR88_RS13045 0.51 -0.2
3,223,584 - ABZR88_RS13045 0.51 +0.0
3,223,651 - ABZR88_RS13045 0.57 -0.1
3,223,674 + ABZR88_RS13045 0.59 -0.0
3,223,771 - ABZR88_RS13045 0.67 -0.1
3,223,948 - ABZR88_RS13045 0.83 +1.3
3,224,097 - +1.4
3,224,122 + -0.1
3,224,125 + +0.1
3,224,158 - +0.3
3,224,301 + ABZR88_RS13050 0.15 -0.7
3,224,396 + ABZR88_RS13050 0.25 -0.1
3,224,533 + ABZR88_RS13050 0.38 +0.3
3,224,738 + ABZR88_RS13050 0.59 -0.2
3,224,836 - ABZR88_RS13050 0.68 -0.1
3,224,878 - ABZR88_RS13050 0.73 -0.6
3,224,939 + ABZR88_RS13050 0.79 -0.2
3,224,939 + ABZR88_RS13050 0.79 +0.1
3,224,944 + ABZR88_RS13050 0.79 +0.1
3,225,016 - ABZR88_RS13050 0.86 -0.3

Or see this region's nucleotide sequence