Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS06180 and ABZR88_RS06185 are separated by 37 nucleotides ABZR88_RS06185 and ABZR88_RS06190 are separated by 175 nucleotides ABZR88_RS06190 and ABZR88_RS06195 are separated by 171 nucleotides
ABZR88_RS06180: ABZR88_RS06180 - L-rhamnose/proton symporter RhaT, at 1,524,216 to 1,525,334
_RS06180
ABZR88_RS06185: ABZR88_RS06185 - bifunctional aldolase/short-chain dehydrogenase, at 1,525,372 to 1,527,492
_RS06185
ABZR88_RS06190: ABZR88_RS06190 - L-rhamnose mutarotase, at 1,527,668 to 1,527,982
_RS06190
ABZR88_RS06195: ABZR88_RS06195 - TIM barrel protein, at 1,528,154 to 1,529,428
_RS06195
Position (kb)
1525
1526
1527
1528 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1524.376 kb on + strand, within ABZR88_RS06180 at 1524.472 kb on + strand, within ABZR88_RS06180 at 1524.478 kb on - strand, within ABZR88_RS06180 at 1524.557 kb on - strand, within ABZR88_RS06180 at 1524.557 kb on - strand, within ABZR88_RS06180 at 1524.650 kb on - strand, within ABZR88_RS06180 at 1524.842 kb on - strand, within ABZR88_RS06180 at 1524.903 kb on + strand, within ABZR88_RS06180 at 1524.916 kb on + strand, within ABZR88_RS06180 at 1524.922 kb on - strand, within ABZR88_RS06180 at 1525.006 kb on - strand, within ABZR88_RS06180 at 1525.155 kb on - strand, within ABZR88_RS06180 at 1525.270 kb on + strand at 1525.371 kb on + strand at 1525.371 kb on + strand at 1525.372 kb on - strand at 1525.511 kb on - strand at 1525.578 kb on - strand at 1525.642 kb on + strand, within ABZR88_RS06185 at 1525.671 kb on + strand, within ABZR88_RS06185 at 1525.676 kb on - strand, within ABZR88_RS06185 at 1525.730 kb on - strand, within ABZR88_RS06185 at 1525.756 kb on - strand, within ABZR88_RS06185 at 1525.821 kb on + strand, within ABZR88_RS06185 at 1525.878 kb on + strand, within ABZR88_RS06185 at 1525.879 kb on - strand, within ABZR88_RS06185 at 1526.026 kb on - strand, within ABZR88_RS06185 at 1526.234 kb on + strand, within ABZR88_RS06185 at 1526.241 kb on + strand, within ABZR88_RS06185 at 1526.281 kb on - strand, within ABZR88_RS06185 at 1526.327 kb on + strand, within ABZR88_RS06185 at 1526.384 kb on + strand, within ABZR88_RS06185 at 1526.416 kb on + strand, within ABZR88_RS06185 at 1526.417 kb on - strand, within ABZR88_RS06185 at 1526.428 kb on + strand, within ABZR88_RS06185 at 1526.654 kb on + strand, within ABZR88_RS06185 at 1526.736 kb on + strand, within ABZR88_RS06185 at 1526.749 kb on - strand, within ABZR88_RS06185 at 1526.882 kb on + strand, within ABZR88_RS06185 at 1527.023 kb on - strand, within ABZR88_RS06185 at 1527.023 kb on - strand, within ABZR88_RS06185 at 1527.036 kb on - strand, within ABZR88_RS06185 at 1527.536 kb on + strand at 1527.565 kb on - strand at 1527.903 kb on - strand, within ABZR88_RS06190 at 1527.903 kb on - strand, within ABZR88_RS06190 at 1527.980 kb on + strand at 1527.980 kb on + strand at 1528.033 kb on + strand at 1528.119 kb on - strand at 1528.119 kb on - strand at 1528.227 kb on - strand at 1528.309 kb on - strand, within ABZR88_RS06195 at 1528.365 kb on + strand, within ABZR88_RS06195 at 1528.436 kb on - strand, within ABZR88_RS06195 at 1528.492 kb on - strand, within ABZR88_RS06195
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,524,376 + ABZR88_RS06180 0.14 -0.3 1,524,472 + ABZR88_RS06180 0.23 +0.2 1,524,478 - ABZR88_RS06180 0.23 -0.1 1,524,557 - ABZR88_RS06180 0.30 +0.5 1,524,557 - ABZR88_RS06180 0.30 +0.3 1,524,650 - ABZR88_RS06180 0.39 -1.3 1,524,842 - ABZR88_RS06180 0.56 +0.2 1,524,903 + ABZR88_RS06180 0.61 +0.7 1,524,916 + ABZR88_RS06180 0.63 -0.2 1,524,922 - ABZR88_RS06180 0.63 -0.1 1,525,006 - ABZR88_RS06180 0.71 +0.3 1,525,155 - ABZR88_RS06180 0.84 -1.3 1,525,270 + -0.1 1,525,371 + -0.3 1,525,371 + +0.3 1,525,372 - +0.5 1,525,511 - +0.4 1,525,578 - +0.4 1,525,642 + ABZR88_RS06185 0.13 +0.2 1,525,671 + ABZR88_RS06185 0.14 +0.1 1,525,676 - ABZR88_RS06185 0.14 +0.1 1,525,730 - ABZR88_RS06185 0.17 +0.2 1,525,756 - ABZR88_RS06185 0.18 +0.2 1,525,821 + ABZR88_RS06185 0.21 -0.3 1,525,878 + ABZR88_RS06185 0.24 +1.2 1,525,879 - ABZR88_RS06185 0.24 +0.3 1,526,026 - ABZR88_RS06185 0.31 +0.1 1,526,234 + ABZR88_RS06185 0.41 +0.5 1,526,241 + ABZR88_RS06185 0.41 +0.1 1,526,281 - ABZR88_RS06185 0.43 +0.3 1,526,327 + ABZR88_RS06185 0.45 +0.3 1,526,384 + ABZR88_RS06185 0.48 +0.6 1,526,416 + ABZR88_RS06185 0.49 -0.2 1,526,417 - ABZR88_RS06185 0.49 +0.6 1,526,428 + ABZR88_RS06185 0.50 +1.0 1,526,654 + ABZR88_RS06185 0.60 +3.6 1,526,736 + ABZR88_RS06185 0.64 +0.6 1,526,749 - ABZR88_RS06185 0.65 -0.0 1,526,882 + ABZR88_RS06185 0.71 +0.3 1,527,023 - ABZR88_RS06185 0.78 +0.2 1,527,023 - ABZR88_RS06185 0.78 +0.4 1,527,036 - ABZR88_RS06185 0.78 +0.3 1,527,536 + +0.1 1,527,565 - +0.1 1,527,903 - ABZR88_RS06190 0.75 -1.0 1,527,903 - ABZR88_RS06190 0.75 +0.3 1,527,980 + -0.1 1,527,980 + -1.3 1,528,033 + +0.6 1,528,119 - +0.3 1,528,119 - -0.3 1,528,227 - +0.0 1,528,309 - ABZR88_RS06195 0.12 -0.1 1,528,365 + ABZR88_RS06195 0.17 -0.0 1,528,436 - ABZR88_RS06195 0.22 +0.4 1,528,492 - ABZR88_RS06195 0.27 -0.4
Or see this region's nucleotide sequence