Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06185

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06180 and ABZR88_RS06185 are separated by 37 nucleotidesABZR88_RS06185 and ABZR88_RS06190 are separated by 175 nucleotidesABZR88_RS06190 and ABZR88_RS06195 are separated by 171 nucleotides ABZR88_RS06180: ABZR88_RS06180 - L-rhamnose/proton symporter RhaT, at 1,524,216 to 1,525,334 _RS06180 ABZR88_RS06185: ABZR88_RS06185 - bifunctional aldolase/short-chain dehydrogenase, at 1,525,372 to 1,527,492 _RS06185 ABZR88_RS06190: ABZR88_RS06190 - L-rhamnose mutarotase, at 1,527,668 to 1,527,982 _RS06190 ABZR88_RS06195: ABZR88_RS06195 - TIM barrel protein, at 1,528,154 to 1,529,428 _RS06195 Position (kb) 1525 1526 1527 1528Strain fitness (log2 ratio) -1 0 1 2 3at 1524.376 kb on + strand, within ABZR88_RS06180at 1524.472 kb on + strand, within ABZR88_RS06180at 1524.478 kb on - strand, within ABZR88_RS06180at 1524.557 kb on - strand, within ABZR88_RS06180at 1524.557 kb on - strand, within ABZR88_RS06180at 1524.650 kb on - strand, within ABZR88_RS06180at 1524.842 kb on - strand, within ABZR88_RS06180at 1524.903 kb on + strand, within ABZR88_RS06180at 1524.916 kb on + strand, within ABZR88_RS06180at 1524.922 kb on - strand, within ABZR88_RS06180at 1525.006 kb on - strand, within ABZR88_RS06180at 1525.155 kb on - strand, within ABZR88_RS06180at 1525.270 kb on + strandat 1525.371 kb on + strandat 1525.371 kb on + strandat 1525.372 kb on - strandat 1525.511 kb on - strandat 1525.578 kb on - strandat 1525.642 kb on + strand, within ABZR88_RS06185at 1525.671 kb on + strand, within ABZR88_RS06185at 1525.676 kb on - strand, within ABZR88_RS06185at 1525.730 kb on - strand, within ABZR88_RS06185at 1525.756 kb on - strand, within ABZR88_RS06185at 1525.821 kb on + strand, within ABZR88_RS06185at 1525.878 kb on + strand, within ABZR88_RS06185at 1525.879 kb on - strand, within ABZR88_RS06185at 1526.026 kb on - strand, within ABZR88_RS06185at 1526.234 kb on + strand, within ABZR88_RS06185at 1526.241 kb on + strand, within ABZR88_RS06185at 1526.281 kb on - strand, within ABZR88_RS06185at 1526.327 kb on + strand, within ABZR88_RS06185at 1526.384 kb on + strand, within ABZR88_RS06185at 1526.416 kb on + strand, within ABZR88_RS06185at 1526.417 kb on - strand, within ABZR88_RS06185at 1526.428 kb on + strand, within ABZR88_RS06185at 1526.654 kb on + strand, within ABZR88_RS06185at 1526.736 kb on + strand, within ABZR88_RS06185at 1526.749 kb on - strand, within ABZR88_RS06185at 1526.882 kb on + strand, within ABZR88_RS06185at 1527.023 kb on - strand, within ABZR88_RS06185at 1527.023 kb on - strand, within ABZR88_RS06185at 1527.036 kb on - strand, within ABZR88_RS06185at 1527.536 kb on + strandat 1527.565 kb on - strandat 1527.903 kb on - strand, within ABZR88_RS06190at 1527.903 kb on - strand, within ABZR88_RS06190at 1527.980 kb on + strandat 1527.980 kb on + strandat 1528.033 kb on + strandat 1528.119 kb on - strandat 1528.119 kb on - strandat 1528.227 kb on - strandat 1528.309 kb on - strand, within ABZR88_RS06195at 1528.365 kb on + strand, within ABZR88_RS06195at 1528.436 kb on - strand, within ABZR88_RS06195at 1528.492 kb on - strand, within ABZR88_RS06195

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,524,376 + ABZR88_RS06180 0.14 -0.3
1,524,472 + ABZR88_RS06180 0.23 +0.2
1,524,478 - ABZR88_RS06180 0.23 -0.1
1,524,557 - ABZR88_RS06180 0.30 +0.5
1,524,557 - ABZR88_RS06180 0.30 +0.3
1,524,650 - ABZR88_RS06180 0.39 -1.3
1,524,842 - ABZR88_RS06180 0.56 +0.2
1,524,903 + ABZR88_RS06180 0.61 +0.7
1,524,916 + ABZR88_RS06180 0.63 -0.2
1,524,922 - ABZR88_RS06180 0.63 -0.1
1,525,006 - ABZR88_RS06180 0.71 +0.3
1,525,155 - ABZR88_RS06180 0.84 -1.3
1,525,270 + -0.1
1,525,371 + -0.3
1,525,371 + +0.3
1,525,372 - +0.5
1,525,511 - +0.4
1,525,578 - +0.4
1,525,642 + ABZR88_RS06185 0.13 +0.2
1,525,671 + ABZR88_RS06185 0.14 +0.1
1,525,676 - ABZR88_RS06185 0.14 +0.1
1,525,730 - ABZR88_RS06185 0.17 +0.2
1,525,756 - ABZR88_RS06185 0.18 +0.2
1,525,821 + ABZR88_RS06185 0.21 -0.3
1,525,878 + ABZR88_RS06185 0.24 +1.2
1,525,879 - ABZR88_RS06185 0.24 +0.3
1,526,026 - ABZR88_RS06185 0.31 +0.1
1,526,234 + ABZR88_RS06185 0.41 +0.5
1,526,241 + ABZR88_RS06185 0.41 +0.1
1,526,281 - ABZR88_RS06185 0.43 +0.3
1,526,327 + ABZR88_RS06185 0.45 +0.3
1,526,384 + ABZR88_RS06185 0.48 +0.6
1,526,416 + ABZR88_RS06185 0.49 -0.2
1,526,417 - ABZR88_RS06185 0.49 +0.6
1,526,428 + ABZR88_RS06185 0.50 +1.0
1,526,654 + ABZR88_RS06185 0.60 +3.6
1,526,736 + ABZR88_RS06185 0.64 +0.6
1,526,749 - ABZR88_RS06185 0.65 -0.0
1,526,882 + ABZR88_RS06185 0.71 +0.3
1,527,023 - ABZR88_RS06185 0.78 +0.2
1,527,023 - ABZR88_RS06185 0.78 +0.4
1,527,036 - ABZR88_RS06185 0.78 +0.3
1,527,536 + +0.1
1,527,565 - +0.1
1,527,903 - ABZR88_RS06190 0.75 -1.0
1,527,903 - ABZR88_RS06190 0.75 +0.3
1,527,980 + -0.1
1,527,980 + -1.3
1,528,033 + +0.6
1,528,119 - +0.3
1,528,119 - -0.3
1,528,227 - +0.0
1,528,309 - ABZR88_RS06195 0.12 -0.1
1,528,365 + ABZR88_RS06195 0.17 -0.0
1,528,436 - ABZR88_RS06195 0.22 +0.4
1,528,492 - ABZR88_RS06195 0.27 -0.4

Or see this region's nucleotide sequence