Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS14285 and ABZR88_RS14290 overlap by 1 nucleotides ABZR88_RS14290 and ABZR88_RS14295 are separated by 37 nucleotides ABZR88_RS14295 and ABZR88_RS14300 overlap by 29 nucleotides
ABZR88_RS14285: ABZR88_RS14285 - glycosyltransferase family 2 protein, at 3,547,847 to 3,548,674
_RS14285
ABZR88_RS14290: ABZR88_RS14290 - nucleotide-diphospho-sugar transferase, at 3,548,674 to 3,549,591
_RS14290
ABZR88_RS14295: ABZR88_RS14295 - DUF5672 family protein, at 3,549,629 to 3,550,411
_RS14295
ABZR88_RS14300: ABZR88_RS14300 - glycosyltransferase family 2 protein, at 3,550,383 to 3,551,309
_RS14300
Position (kb)
3549
3550
3551 Strain fitness (log2 ratio)
-1
0
1
2 at 3548.648 kb on - strand at 3548.673 kb on - strand at 3548.693 kb on + strand at 3548.925 kb on + strand, within ABZR88_RS14290 at 3549.048 kb on - strand, within ABZR88_RS14290 at 3549.093 kb on + strand, within ABZR88_RS14290 at 3549.100 kb on + strand, within ABZR88_RS14290 at 3549.125 kb on + strand, within ABZR88_RS14290 at 3549.126 kb on - strand, within ABZR88_RS14290 at 3549.257 kb on - strand, within ABZR88_RS14290 at 3549.354 kb on + strand, within ABZR88_RS14290 at 3549.437 kb on - strand, within ABZR88_RS14290 at 3549.517 kb on - strand at 3549.632 kb on + strand at 3549.633 kb on - strand at 3549.634 kb on + strand at 3549.641 kb on - strand at 3549.641 kb on - strand at 3549.730 kb on - strand, within ABZR88_RS14295 at 3550.059 kb on - strand, within ABZR88_RS14295 at 3550.105 kb on - strand, within ABZR88_RS14295 at 3550.195 kb on + strand, within ABZR88_RS14295 at 3550.200 kb on + strand, within ABZR88_RS14295 at 3550.202 kb on - strand, within ABZR88_RS14295 at 3550.352 kb on + strand at 3550.354 kb on + strand at 3550.555 kb on + strand, within ABZR88_RS14300 at 3550.556 kb on - strand, within ABZR88_RS14300 at 3550.557 kb on + strand, within ABZR88_RS14300 at 3550.685 kb on - strand, within ABZR88_RS14300 at 3550.706 kb on + strand, within ABZR88_RS14300 at 3551.219 kb on - strand at 3551.264 kb on + strand at 3551.275 kb on - strand at 3551.277 kb on - strand at 3551.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,548,648 - -0.1 3,548,673 - +0.1 3,548,693 + -0.3 3,548,925 + ABZR88_RS14290 0.27 -0.5 3,549,048 - ABZR88_RS14290 0.41 -0.0 3,549,093 + ABZR88_RS14290 0.46 -0.1 3,549,100 + ABZR88_RS14290 0.46 -0.6 3,549,125 + ABZR88_RS14290 0.49 -0.4 3,549,126 - ABZR88_RS14290 0.49 -0.1 3,549,257 - ABZR88_RS14290 0.64 -0.5 3,549,354 + ABZR88_RS14290 0.74 -0.9 3,549,437 - ABZR88_RS14290 0.83 -0.3 3,549,517 - -0.1 3,549,632 + -0.9 3,549,633 - -0.5 3,549,634 + -0.4 3,549,641 - +0.0 3,549,641 - -0.1 3,549,730 - ABZR88_RS14295 0.13 +0.6 3,550,059 - ABZR88_RS14295 0.55 +0.4 3,550,105 - ABZR88_RS14295 0.61 -0.2 3,550,195 + ABZR88_RS14295 0.72 +0.1 3,550,200 + ABZR88_RS14295 0.73 -0.3 3,550,202 - ABZR88_RS14295 0.73 +2.2 3,550,352 + -0.2 3,550,354 + -0.0 3,550,555 + ABZR88_RS14300 0.19 -0.6 3,550,556 - ABZR88_RS14300 0.19 -0.1 3,550,557 + ABZR88_RS14300 0.19 -0.4 3,550,685 - ABZR88_RS14300 0.33 -0.0 3,550,706 + ABZR88_RS14300 0.35 -0.0 3,551,219 - -0.5 3,551,264 + -0.3 3,551,275 - -0.0 3,551,277 - +0.2 3,551,284 - -0.0
Or see this region's nucleotide sequence