Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13665 and ABZR88_RS13670 are separated by 231 nucleotides ABZR88_RS13670 and ABZR88_RS13675 are separated by 19 nucleotides ABZR88_RS13675 and ABZR88_RS13680 are separated by 40 nucleotides
ABZR88_RS13665: ABZR88_RS13665 - phosphatase PAP2 family protein, at 3,423,273 to 3,424,091
_RS13665
ABZR88_RS13670: ABZR88_RS13670 - nuclear transport factor 2 family protein, at 3,424,323 to 3,424,751
_RS13670
ABZR88_RS13675: ABZR88_RS13675 - carboxymuconolactone decarboxylase family protein, at 3,424,771 to 3,425,310
_RS13675
ABZR88_RS13680: ABZR88_RS13680 - DUF417 family protein, at 3,425,351 to 3,425,920
_RS13680
Position (kb)
3424
3425 Strain fitness (log2 ratio)
-1
0
1
2 at 3423.481 kb on + strand, within ABZR88_RS13665 at 3423.482 kb on - strand, within ABZR88_RS13665 at 3423.619 kb on + strand, within ABZR88_RS13665 at 3423.704 kb on - strand, within ABZR88_RS13665 at 3423.921 kb on + strand, within ABZR88_RS13665 at 3423.954 kb on + strand, within ABZR88_RS13665 at 3424.016 kb on + strand at 3424.017 kb on - strand at 3424.207 kb on - strand at 3424.271 kb on - strand at 3424.310 kb on + strand at 3424.310 kb on + strand at 3424.355 kb on + strand at 3424.378 kb on + strand, within ABZR88_RS13670 at 3424.469 kb on + strand, within ABZR88_RS13670 at 3424.503 kb on + strand, within ABZR88_RS13670 at 3424.641 kb on - strand, within ABZR88_RS13670 at 3424.763 kb on + strand at 3424.764 kb on - strand at 3424.836 kb on + strand, within ABZR88_RS13675 at 3425.019 kb on + strand, within ABZR88_RS13675 at 3425.276 kb on - strand at 3425.276 kb on - strand at 3425.437 kb on + strand, within ABZR88_RS13680 at 3425.621 kb on + strand, within ABZR88_RS13680 at 3425.669 kb on - strand, within ABZR88_RS13680 at 3425.678 kb on - strand, within ABZR88_RS13680 at 3425.734 kb on - strand, within ABZR88_RS13680 at 3425.751 kb on + strand, within ABZR88_RS13680 at 3425.751 kb on + strand, within ABZR88_RS13680
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,423,481 + ABZR88_RS13665 0.25 -0.6 3,423,482 - ABZR88_RS13665 0.26 -0.5 3,423,619 + ABZR88_RS13665 0.42 -0.1 3,423,704 - ABZR88_RS13665 0.53 +0.3 3,423,921 + ABZR88_RS13665 0.79 +0.3 3,423,954 + ABZR88_RS13665 0.83 -0.7 3,424,016 + -0.1 3,424,017 - -0.3 3,424,207 - +2.2 3,424,271 - -0.3 3,424,310 + -0.4 3,424,310 + -0.5 3,424,355 + -0.1 3,424,378 + ABZR88_RS13670 0.13 -0.2 3,424,469 + ABZR88_RS13670 0.34 -0.1 3,424,503 + ABZR88_RS13670 0.42 +0.1 3,424,641 - ABZR88_RS13670 0.74 +0.1 3,424,763 + -0.1 3,424,764 - -0.1 3,424,836 + ABZR88_RS13675 0.12 -0.4 3,425,019 + ABZR88_RS13675 0.46 -0.5 3,425,276 - -0.1 3,425,276 - -0.1 3,425,437 + ABZR88_RS13680 0.15 -0.4 3,425,621 + ABZR88_RS13680 0.47 -0.6 3,425,669 - ABZR88_RS13680 0.56 -0.1 3,425,678 - ABZR88_RS13680 0.57 +0.6 3,425,734 - ABZR88_RS13680 0.67 -0.7 3,425,751 + ABZR88_RS13680 0.70 +0.0 3,425,751 + ABZR88_RS13680 0.70 +0.2
Or see this region's nucleotide sequence