Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13670

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13665 and ABZR88_RS13670 are separated by 231 nucleotidesABZR88_RS13670 and ABZR88_RS13675 are separated by 19 nucleotidesABZR88_RS13675 and ABZR88_RS13680 are separated by 40 nucleotides ABZR88_RS13665: ABZR88_RS13665 - phosphatase PAP2 family protein, at 3,423,273 to 3,424,091 _RS13665 ABZR88_RS13670: ABZR88_RS13670 - nuclear transport factor 2 family protein, at 3,424,323 to 3,424,751 _RS13670 ABZR88_RS13675: ABZR88_RS13675 - carboxymuconolactone decarboxylase family protein, at 3,424,771 to 3,425,310 _RS13675 ABZR88_RS13680: ABZR88_RS13680 - DUF417 family protein, at 3,425,351 to 3,425,920 _RS13680 Position (kb) 3424 3425Strain fitness (log2 ratio) -1 0 1 2at 3423.481 kb on + strand, within ABZR88_RS13665at 3423.482 kb on - strand, within ABZR88_RS13665at 3423.619 kb on + strand, within ABZR88_RS13665at 3423.704 kb on - strand, within ABZR88_RS13665at 3423.921 kb on + strand, within ABZR88_RS13665at 3423.954 kb on + strand, within ABZR88_RS13665at 3424.016 kb on + strandat 3424.017 kb on - strandat 3424.207 kb on - strandat 3424.271 kb on - strandat 3424.310 kb on + strandat 3424.310 kb on + strandat 3424.355 kb on + strandat 3424.378 kb on + strand, within ABZR88_RS13670at 3424.469 kb on + strand, within ABZR88_RS13670at 3424.503 kb on + strand, within ABZR88_RS13670at 3424.641 kb on - strand, within ABZR88_RS13670at 3424.763 kb on + strandat 3424.764 kb on - strandat 3424.836 kb on + strand, within ABZR88_RS13675at 3425.019 kb on + strand, within ABZR88_RS13675at 3425.276 kb on - strandat 3425.276 kb on - strandat 3425.437 kb on + strand, within ABZR88_RS13680at 3425.621 kb on + strand, within ABZR88_RS13680at 3425.669 kb on - strand, within ABZR88_RS13680at 3425.678 kb on - strand, within ABZR88_RS13680at 3425.734 kb on - strand, within ABZR88_RS13680at 3425.751 kb on + strand, within ABZR88_RS13680at 3425.751 kb on + strand, within ABZR88_RS13680

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,423,481 + ABZR88_RS13665 0.25 -0.6
3,423,482 - ABZR88_RS13665 0.26 -0.5
3,423,619 + ABZR88_RS13665 0.42 -0.1
3,423,704 - ABZR88_RS13665 0.53 +0.3
3,423,921 + ABZR88_RS13665 0.79 +0.3
3,423,954 + ABZR88_RS13665 0.83 -0.7
3,424,016 + -0.1
3,424,017 - -0.3
3,424,207 - +2.2
3,424,271 - -0.3
3,424,310 + -0.4
3,424,310 + -0.5
3,424,355 + -0.1
3,424,378 + ABZR88_RS13670 0.13 -0.2
3,424,469 + ABZR88_RS13670 0.34 -0.1
3,424,503 + ABZR88_RS13670 0.42 +0.1
3,424,641 - ABZR88_RS13670 0.74 +0.1
3,424,763 + -0.1
3,424,764 - -0.1
3,424,836 + ABZR88_RS13675 0.12 -0.4
3,425,019 + ABZR88_RS13675 0.46 -0.5
3,425,276 - -0.1
3,425,276 - -0.1
3,425,437 + ABZR88_RS13680 0.15 -0.4
3,425,621 + ABZR88_RS13680 0.47 -0.6
3,425,669 - ABZR88_RS13680 0.56 -0.1
3,425,678 - ABZR88_RS13680 0.57 +0.6
3,425,734 - ABZR88_RS13680 0.67 -0.7
3,425,751 + ABZR88_RS13680 0.70 +0.0
3,425,751 + ABZR88_RS13680 0.70 +0.2

Or see this region's nucleotide sequence