Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07450 and ABZR88_RS07455 are separated by 285 nucleotides ABZR88_RS07455 and ABZR88_RS07460 are separated by 99 nucleotides ABZR88_RS07460 and ABZR88_RS07465 are separated by 18 nucleotides ABZR88_RS07465 and ABZR88_RS07470 are separated by 195 nucleotides
ABZR88_RS07450: ABZR88_RS07450 - hypothetical protein, at 1,861,476 to 1,863,860
_RS07450
ABZR88_RS07455: ABZR88_RS07455 - helix-turn-helix domain-containing protein, at 1,864,146 to 1,864,385
_RS07455
ABZR88_RS07460: ABZR88_RS07460 - hypothetical protein, at 1,864,485 to 1,864,697
_RS07460
ABZR88_RS07465: ABZR88_RS07465 - hypothetical protein, at 1,864,716 to 1,865,072
_RS07465
ABZR88_RS07470: ABZR88_RS07470 - IS21-like element helper ATPase IstB, at 1,865,268 to 1,866,029
_RS07470
Position (kb)
1864
1865 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1863.513 kb on + strand, within ABZR88_RS07450 at 1863.514 kb on - strand, within ABZR88_RS07450 at 1863.571 kb on + strand, within ABZR88_RS07450 at 1863.937 kb on + strand at 1863.940 kb on + strand at 1863.946 kb on + strand at 1864.091 kb on + strand at 1864.296 kb on + strand, within ABZR88_RS07455 at 1864.297 kb on - strand, within ABZR88_RS07455 at 1864.350 kb on - strand, within ABZR88_RS07455 at 1864.464 kb on + strand at 1864.464 kb on + strand at 1864.495 kb on - strand at 1864.507 kb on + strand, within ABZR88_RS07460 at 1864.536 kb on - strand, within ABZR88_RS07460 at 1864.598 kb on + strand, within ABZR88_RS07460 at 1864.699 kb on + strand at 1864.700 kb on - strand at 1864.765 kb on + strand, within ABZR88_RS07465 at 1864.770 kb on + strand, within ABZR88_RS07465 at 1864.799 kb on - strand, within ABZR88_RS07465 at 1864.811 kb on + strand, within ABZR88_RS07465 at 1864.843 kb on - strand, within ABZR88_RS07465 at 1864.969 kb on + strand, within ABZR88_RS07465 at 1864.970 kb on - strand, within ABZR88_RS07465 at 1865.052 kb on - strand at 1865.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,863,513 + ABZR88_RS07450 0.85 +0.4 1,863,514 - ABZR88_RS07450 0.85 -0.1 1,863,571 + ABZR88_RS07450 0.88 +0.2 1,863,937 + -0.3 1,863,940 + -0.1 1,863,946 + +2.6 1,864,091 + -0.0 1,864,296 + ABZR88_RS07455 0.62 -0.4 1,864,297 - ABZR88_RS07455 0.63 -0.1 1,864,350 - ABZR88_RS07455 0.85 -0.5 1,864,464 + -0.6 1,864,464 + -0.5 1,864,495 - -0.2 1,864,507 + ABZR88_RS07460 0.10 -0.4 1,864,536 - ABZR88_RS07460 0.24 +0.2 1,864,598 + ABZR88_RS07460 0.53 +0.7 1,864,699 + -0.2 1,864,700 - -0.1 1,864,765 + ABZR88_RS07465 0.14 -0.4 1,864,770 + ABZR88_RS07465 0.15 -1.2 1,864,799 - ABZR88_RS07465 0.23 -0.3 1,864,811 + ABZR88_RS07465 0.27 -0.2 1,864,843 - ABZR88_RS07465 0.36 -0.5 1,864,969 + ABZR88_RS07465 0.71 -0.2 1,864,970 - ABZR88_RS07465 0.71 -0.2 1,865,052 - -1.9 1,865,078 - +0.0
Or see this region's nucleotide sequence