Strain Fitness in Pseudomonas sp. RS175 around PFR28_04839

Experiment: Shikimic Acid (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C) 10 mM
5,529,979	-				-0.2
5,530,026	+				-0.4
5,530,027	-				+0.8
5,530,027	-				-0.8
5,530,027	-				+0.6
5,530,027	-				-1.8
5,530,027	-				+0.3
5,530,027	-				-1.0
5,530,052	+				-0.1
5,530,133	-				+0.9
5,530,249	+		PFR28_04838	0.20	-0.0
5,530,249	+		PFR28_04838	0.20	-1.1
5,530,249	+		PFR28_04838	0.20	+0.6
5,530,250	-		PFR28_04838	0.21	+0.7
5,530,250	-		PFR28_04838	0.21	+0.6
5,530,251	+		PFR28_04838	0.21	-1.0
5,530,251	+		PFR28_04838	0.21	+0.3
5,530,251	+		PFR28_04838	0.21	-0.8
5,530,251	+		PFR28_04838	0.21	-1.6
5,530,251	+		PFR28_04838	0.21	-0.7
5,530,251	+		PFR28_04838	0.21	+1.1
5,530,252	-		PFR28_04838	0.21	+0.3
5,530,252	-		PFR28_04838	0.21	-1.5
5,530,252	-		PFR28_04838	0.21	-0.8
5,530,252	-		PFR28_04838	0.21	-1.3
5,530,252	-		PFR28_04838	0.21	-0.8
5,530,252	-		PFR28_04838	0.21	-2.0
5,530,252	-		PFR28_04838	0.21	+0.9
5,530,252	-		PFR28_04838	0.21	+0.4
5,530,252	-		PFR28_04838	0.21	-0.4
5,530,252	-		PFR28_04838	0.21	+0.3
5,530,328	+		PFR28_04838	0.30	-0.2
5,530,328	+		PFR28_04838	0.30	+0.6
5,530,328	+		PFR28_04838	0.30	+0.7
5,530,328	+		PFR28_04838	0.30	-0.2
5,530,328	+		PFR28_04838	0.30	+0.9
5,530,328	+		PFR28_04838	0.30	-2.8
5,530,328	+		PFR28_04838	0.30	-0.7
5,530,328	+		PFR28_04838	0.30	+0.2
5,530,328	+		PFR28_04838	0.30	-1.6
5,530,328	+		PFR28_04838	0.30	-0.7
5,530,329	-		PFR28_04838	0.30	-0.0
5,530,329	-		PFR28_04838	0.30	-0.0
5,530,329	-		PFR28_04838	0.30	-0.0
5,530,329	-		PFR28_04838	0.30	-0.2
5,530,329	-		PFR28_04838	0.30	+1.4
5,530,332	+		PFR28_04838	0.30	+0.4
5,530,332	+		PFR28_04838	0.30	+1.0
5,530,332	+		PFR28_04838	0.30	-0.1
5,530,332	+		PFR28_04838	0.30	+0.3
5,530,332	+		PFR28_04838	0.30	+0.9
5,530,332	+		PFR28_04838	0.30	+1.2
5,530,332	+		PFR28_04838	0.30	+0.1
5,530,333	-		PFR28_04838	0.30	-0.8
5,530,333	-		PFR28_04838	0.30	-2.4
5,530,333	-		PFR28_04838	0.30	+0.6
5,530,333	-		PFR28_04838	0.30	-0.9
5,530,333	-		PFR28_04838	0.30	-1.2
5,530,333	-		PFR28_04838	0.30	-1.1
5,530,333	-		PFR28_04838	0.30	+0.6
5,530,333	-		PFR28_04838	0.30	+0.9
5,530,398	+		PFR28_04838	0.38	+0.1
5,530,398	+		PFR28_04838	0.38	+0.6
5,530,399	-		PFR28_04838	0.38	+0.6
5,530,399	-		PFR28_04838	0.38	+0.1
5,530,478	-		PFR28_04838	0.48	-0.5
5,530,498	+		PFR28_04838	0.50	+0.3
5,530,498	+		PFR28_04838	0.50	-1.2
5,530,498	+		PFR28_04838	0.50	+0.1
5,530,499	-		PFR28_04838	0.50	+0.2
5,530,499	-		PFR28_04838	0.50	-0.0
5,530,499	-		PFR28_04838	0.50	+0.6
5,530,499	-		PFR28_04838	0.50	-1.1
5,530,499	-		PFR28_04838	0.50	+0.9
5,530,499	-		PFR28_04838	0.50	+0.2
5,530,512	+		PFR28_04838	0.52	+0.6
5,530,512	+		PFR28_04838	0.52	-0.6
5,530,513	-		PFR28_04838	0.52	+0.2
5,530,513	-		PFR28_04838	0.52	-2.1
5,530,513	-		PFR28_04838	0.52	-0.4
5,530,513	-		PFR28_04838	0.52	-0.3
5,530,513	-		PFR28_04838	0.52	-0.3
5,530,513	-		PFR28_04838	0.52	+0.9
5,530,561	+		PFR28_04838	0.58	+1.2
5,530,562	-		PFR28_04838	0.58	-0.0
5,530,562	-		PFR28_04838	0.58	-0.2
5,530,562	-		PFR28_04838	0.58	-0.2
5,530,562	-		PFR28_04838	0.58	-0.4
5,530,704	+		PFR28_04838	0.75	+0.2
5,530,778	-		PFR28_04838	0.83	-0.1
5,530,852	+				-0.1
5,530,894	+				-0.5
5,530,894	+				+0.1
5,530,895	-				+0.3
5,530,940	+		PFR28_04839	0.16	-0.1
5,531,015	-		PFR28_04839	0.35	-0.3
5,531,048	+		PFR28_04839	0.43	-0.4
5,531,049	-		PFR28_04839	0.44	+1.3
5,531,151	-		PFR28_04839	0.69	-0.3
5,531,151	-		PFR28_04839	0.69	-0.4
5,531,209	+		PFR28_04839	0.84	+2.2
5,531,210	-		PFR28_04839	0.84	+1.3
5,531,210	-		PFR28_04839	0.84	-3.4
5,531,210	-		PFR28_04839	0.84	+1.8
5,531,223	-		PFR28_04839	0.88	-1.2
5,531,248	+				+0.7
5,531,248	+				-0.0
5,531,248	+				-0.3
5,531,248	+				+1.2
5,531,248	+				+0.3
5,531,249	-				+0.4
5,531,249	-				+1.2
5,531,249	-				-0.3
5,531,745	+		PFR28_04840	0.59	+0.6
5,531,746	-		PFR28_04840	0.59	-0.3
5,531,746	-		PFR28_04840	0.59	-1.7
5,531,809	+		PFR28_04840	0.69	-1.4
5,531,938	+		PFR28_04840	0.88	-1.8
5,531,938	+		PFR28_04840	0.88	+0.4
5,531,939	-		PFR28_04840	0.88	-3.0
5,531,939	-		PFR28_04840	0.88	-1.0
5,531,939	-		PFR28_04840	0.88	-0.7
5,531,942	+		PFR28_04840	0.89	+0.8
5,531,942	+		PFR28_04840	0.89	+0.1
5,531,942	+		PFR28_04840	0.89	-0.7
5,531,942	+		PFR28_04840	0.89	+1.1
5,531,942	+		PFR28_04840	0.89	-2.0
5,531,942	+		PFR28_04840	0.89	-0.9
5,531,943	-		PFR28_04840	0.89	-1.1
5,531,998	+				+0.0
5,531,998	+				-0.1
5,531,998	+				-0.8
5,531,998	+				+0.6
5,531,998	+				+0.4
5,531,999	-				+0.7
5,531,999	-				+0.5
5,531,999	-				-1.1
5,531,999	-				-0.9
5,531,999	-				-0.1
5,531,999	-				-1.8
5,531,999	-				+0.1
5,531,999	-				+0.5
5,532,010	+				+0.1
5,532,010	+				+0.4
5,532,010	+				+1.6
5,532,010	+				-0.7
5,532,011	-				-1.1
5,532,011	-				+2.4
5,532,011	-				-0.8
5,532,011	-				-0.0
5,532,110	+				-0.5
5,532,110	+				-1.4
5,532,110	+				-0.0
5,532,110	+				-0.7
5,532,111	-				+0.3
5,532,111	-				+0.1
5,532,111	-				-0.4
5,532,111	-				-0.2
5,532,111	-				-0.7
5,532,111	-				+0.0
5,532,137	+				+0.0
5,532,137	+				-0.4
5,532,137	+				-0.2
5,532,137	+				-1.9
5,532,138	-				-1.7
5,532,147	-				-1.6
5,532,147	-				-2.2
5,532,167	-				-1.0
5,532,167	-				-0.1
5,532,197	+		PFR28_04841	0.11	-1.0
5,532,197	+		PFR28_04841	0.11	+0.1
5,532,197	+		PFR28_04841	0.11	+0.4
5,532,197	+		PFR28_04841	0.11	+0.8
5,532,198	-		PFR28_04841	0.11	-0.0