Experiment: Shikimic Acid (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04377 and PFR28_04378 overlap by 1 nucleotides PFR28_04378 and PFR28_04379 overlap by 4 nucleotides PFR28_04379 and PFR28_04380 are separated by 211 nucleotides PFR28_04380 and PFR28_04381 are separated by 101 nucleotides
PFR28_04377: PFR28_04377 - hypothetical protein, at 4,987,902 to 4,988,627
_04377
PFR28_04378: PFR28_04378 - Tyrosine recombinase XerC, at 4,988,627 to 4,989,529
_04378
PFR28_04379: PFR28_04379 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,989,526 to 4,990,230
_04379
PFR28_04380: PFR28_04380 - Transcriptional regulator SutA, at 4,990,442 to 4,990,762
_04380
PFR28_04381: PFR28_04381 - hypothetical protein, at 4,990,864 to 4,991,316
_04381
Position (kb) 4989
4990
4991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4988.529 kb on + strand, within PFR28_04377 at 4988.529 kb on + strand, within PFR28_04377 at 4988.530 kb on - strand, within PFR28_04377 at 4988.530 kb on - strand, within PFR28_04377 at 4988.562 kb on + strand at 4988.562 kb on + strand at 4988.562 kb on + strand at 4988.563 kb on - strand at 4988.563 kb on - strand at 4988.652 kb on - strand at 4988.692 kb on + strand at 4988.870 kb on + strand, within PFR28_04378 at 4988.870 kb on + strand, within PFR28_04378 at 4988.871 kb on - strand, within PFR28_04378 at 4988.876 kb on + strand, within PFR28_04378 at 4988.876 kb on + strand, within PFR28_04378 at 4988.877 kb on - strand, within PFR28_04378 at 4989.050 kb on + strand, within PFR28_04378 at 4989.050 kb on + strand, within PFR28_04378 at 4989.051 kb on - strand, within PFR28_04378 at 4989.051 kb on - strand, within PFR28_04378 at 4989.051 kb on - strand, within PFR28_04378 at 4989.051 kb on - strand, within PFR28_04378 at 4989.051 kb on - strand, within PFR28_04378 at 4989.443 kb on + strand at 4989.444 kb on - strand at 4989.444 kb on - strand at 4989.479 kb on + strand at 4989.479 kb on + strand at 4989.480 kb on - strand at 4989.480 kb on - strand at 4989.480 kb on - strand at 4989.480 kb on - strand at 4989.608 kb on + strand, within PFR28_04379 at 4989.650 kb on + strand, within PFR28_04379 at 4989.651 kb on - strand, within PFR28_04379 at 4989.926 kb on + strand, within PFR28_04379 at 4989.926 kb on + strand, within PFR28_04379 at 4989.927 kb on - strand, within PFR28_04379 at 4989.949 kb on + strand, within PFR28_04379 at 4989.950 kb on - strand, within PFR28_04379 at 4989.950 kb on - strand, within PFR28_04379 at 4989.950 kb on - strand, within PFR28_04379 at 4989.950 kb on - strand, within PFR28_04379 at 4989.950 kb on - strand, within PFR28_04379 at 4990.012 kb on + strand, within PFR28_04379 at 4990.218 kb on + strand at 4990.219 kb on - strand at 4990.219 kb on - strand at 4990.299 kb on + strand at 4990.376 kb on + strand at 4990.376 kb on + strand at 4990.376 kb on + strand at 4990.376 kb on + strand at 4990.377 kb on - strand at 4990.377 kb on - strand at 4990.377 kb on - strand at 4990.377 kb on - strand at 4990.377 kb on - strand at 4990.377 kb on - strand at 4990.377 kb on - strand at 4990.381 kb on + strand at 4990.447 kb on + strand at 4990.448 kb on - strand at 4990.448 kb on - strand at 4990.448 kb on - strand at 4990.589 kb on + strand, within PFR28_04380 at 4990.589 kb on + strand, within PFR28_04380 at 4990.590 kb on - strand, within PFR28_04380 at 4990.613 kb on + strand, within PFR28_04380 at 4990.613 kb on + strand, within PFR28_04380 at 4990.724 kb on + strand, within PFR28_04380 at 4990.725 kb on - strand, within PFR28_04380 at 4990.725 kb on - strand, within PFR28_04380 at 4990.767 kb on + strand at 4990.767 kb on + strand at 4990.767 kb on + strand at 4990.768 kb on - strand at 4990.768 kb on - strand at 4990.768 kb on - strand at 4990.768 kb on - strand at 4990.768 kb on - strand at 4990.793 kb on + strand at 4990.793 kb on + strand at 4990.793 kb on + strand at 4990.793 kb on + strand at 4990.793 kb on + strand at 4990.793 kb on + strand at 4990.793 kb on + strand at 4990.793 kb on + strand at 4990.793 kb on + strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.794 kb on - strand at 4990.797 kb on + strand at 4990.797 kb on + strand at 4990.797 kb on + strand at 4990.797 kb on + strand at 4990.797 kb on + strand at 4990.798 kb on - strand at 4990.798 kb on - strand at 4990.798 kb on - strand at 4990.798 kb on - strand at 4990.798 kb on - strand at 4990.798 kb on - strand at 4990.798 kb on - strand at 4990.798 kb on - strand at 4990.798 kb on - strand at 4990.799 kb on + strand at 4990.800 kb on - strand at 4990.800 kb on - strand at 4990.880 kb on + strand at 4990.880 kb on + strand at 4990.880 kb on + strand at 4990.880 kb on + strand at 4990.880 kb on + strand at 4990.881 kb on - strand at 4990.881 kb on - strand at 4990.881 kb on - strand at 4990.881 kb on - strand at 4990.900 kb on - strand at 4990.934 kb on + strand, within PFR28_04381 at 4990.934 kb on + strand, within PFR28_04381 at 4990.934 kb on + strand, within PFR28_04381 at 4990.934 kb on + strand, within PFR28_04381 at 4990.935 kb on - strand, within PFR28_04381 at 4990.935 kb on - strand, within PFR28_04381 at 4991.057 kb on + strand, within PFR28_04381 at 4991.057 kb on + strand, within PFR28_04381 at 4991.057 kb on + strand, within PFR28_04381 at 4991.058 kb on - strand, within PFR28_04381 at 4991.058 kb on - strand, within PFR28_04381
Per-strain Table
Position Strand Gene LocusTag Fraction Shikimic Acid (C) 10 mM remove 4,988,529 + PFR28_04377 0.86 -0.1 4,988,529 + PFR28_04377 0.86 +1.0 4,988,530 - PFR28_04377 0.87 -2.0 4,988,530 - PFR28_04377 0.87 +0.1 4,988,562 + -0.4 4,988,562 + -0.1 4,988,562 + -0.3 4,988,563 - -0.6 4,988,563 - -1.2 4,988,652 - +1.6 4,988,692 + +0.2 4,988,870 + PFR28_04378 0.27 +0.6 4,988,870 + PFR28_04378 0.27 +1.7 4,988,871 - PFR28_04378 0.27 -1.0 4,988,876 + PFR28_04378 0.28 -1.6 4,988,876 + PFR28_04378 0.28 +0.6 4,988,877 - PFR28_04378 0.28 -0.9 4,989,050 + PFR28_04378 0.47 -2.8 4,989,050 + PFR28_04378 0.47 -1.3 4,989,051 - PFR28_04378 0.47 -1.0 4,989,051 - PFR28_04378 0.47 -2.9 4,989,051 - PFR28_04378 0.47 +0.2 4,989,051 - PFR28_04378 0.47 -0.0 4,989,051 - PFR28_04378 0.47 -0.0 4,989,443 + -1.6 4,989,444 - -1.4 4,989,444 - -2.2 4,989,479 + +0.3 4,989,479 + -0.2 4,989,480 - -0.0 4,989,480 - -1.2 4,989,480 - -0.2 4,989,480 - +0.1 4,989,608 + PFR28_04379 0.12 +0.6 4,989,650 + PFR28_04379 0.18 -0.3 4,989,651 - PFR28_04379 0.18 -0.5 4,989,926 + PFR28_04379 0.57 +0.5 4,989,926 + PFR28_04379 0.57 -0.0 4,989,927 - PFR28_04379 0.57 +1.4 4,989,949 + PFR28_04379 0.60 -0.8 4,989,950 - PFR28_04379 0.60 +2.2 4,989,950 - PFR28_04379 0.60 +0.2 4,989,950 - PFR28_04379 0.60 +1.9 4,989,950 - PFR28_04379 0.60 +2.6 4,989,950 - PFR28_04379 0.60 +0.9 4,990,012 + PFR28_04379 0.69 +0.5 4,990,218 + -0.2 4,990,219 - +0.9 4,990,219 - -0.5 4,990,299 + +0.5 4,990,376 + +0.2 4,990,376 + -1.1 4,990,376 + +0.6 4,990,376 + +0.6 4,990,377 - +0.9 4,990,377 - -0.6 4,990,377 - -0.6 4,990,377 - +0.7 4,990,377 - -1.5 4,990,377 - -0.6 4,990,377 - -0.4 4,990,381 + -0.9 4,990,447 + -1.0 4,990,448 - -0.6 4,990,448 - -1.1 4,990,448 - +1.1 4,990,589 + PFR28_04380 0.46 -0.0 4,990,589 + PFR28_04380 0.46 +0.6 4,990,590 - PFR28_04380 0.46 -2.1 4,990,613 + PFR28_04380 0.53 +1.1 4,990,613 + PFR28_04380 0.53 -0.2 4,990,724 + PFR28_04380 0.88 -0.4 4,990,725 - PFR28_04380 0.88 +1.6 4,990,725 - PFR28_04380 0.88 +1.4 4,990,767 + -0.3 4,990,767 + -1.0 4,990,767 + -0.4 4,990,768 - -1.6 4,990,768 - -2.4 4,990,768 - +0.2 4,990,768 - +0.1 4,990,768 - -0.6 4,990,793 + -1.1 4,990,793 + -1.6 4,990,793 + -0.1 4,990,793 + +1.0 4,990,793 + +0.3 4,990,793 + -2.6 4,990,793 + -1.2 4,990,793 + -2.3 4,990,793 + +1.6 4,990,794 - +0.5 4,990,794 - -2.0 4,990,794 - -1.2 4,990,794 - +0.9 4,990,794 - +0.6 4,990,794 - -0.4 4,990,794 - -0.3 4,990,794 - +0.4 4,990,794 - -1.6 4,990,794 - -0.7 4,990,794 - -1.4 4,990,797 + +0.2 4,990,797 + +0.7 4,990,797 + +0.3 4,990,797 + +0.1 4,990,797 + +0.3 4,990,798 - -1.3 4,990,798 - +0.1 4,990,798 - -0.3 4,990,798 - -0.5 4,990,798 - +0.2 4,990,798 - -0.9 4,990,798 - -2.0 4,990,798 - +0.2 4,990,798 - -0.2 4,990,799 + +0.1 4,990,800 - -0.2 4,990,800 - +0.8 4,990,880 + -0.0 4,990,880 + +0.1 4,990,880 + +0.9 4,990,880 + -1.3 4,990,880 + -0.3 4,990,881 - -0.6 4,990,881 - -1.1 4,990,881 - +0.3 4,990,881 - -1.4 4,990,900 - -1.0 4,990,934 + PFR28_04381 0.15 -1.0 4,990,934 + PFR28_04381 0.15 -0.4 4,990,934 + PFR28_04381 0.15 -0.8 4,990,934 + PFR28_04381 0.15 -2.8 4,990,935 - PFR28_04381 0.16 +0.1 4,990,935 - PFR28_04381 0.16 -0.1 4,991,057 + PFR28_04381 0.43 +0.0 4,991,057 + PFR28_04381 0.43 +1.2 4,991,057 + PFR28_04381 0.43 -1.2 4,991,058 - PFR28_04381 0.43 +1.0 4,991,058 - PFR28_04381 0.43 +0.2
Or see this region's nucleotide sequence