Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18280 and LRK53_RS18285 are separated by 715 nucleotides LRK53_RS18285 and LRK53_RS18290 are separated by 151 nucleotides LRK53_RS18290 and LRK53_RS18295 are separated by 250 nucleotides
LRK53_RS18280: LRK53_RS18280 - hypothetical protein, at 33,243 to 33,995
_RS18280
LRK53_RS18285: LRK53_RS18285 - hypothetical protein, at 34,711 to 34,926
_RS18285
LRK53_RS18290: LRK53_RS18290 - hypothetical protein, at 35,078 to 35,251
_RS18290
LRK53_RS18295: LRK53_RS18295 - hypothetical protein, at 35,502 to 36,113
_RS18295
Position (kb)
34
35 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 33.760 kb on + strand, within LRK53_RS18280 at 33.769 kb on + strand, within LRK53_RS18280 at 33.769 kb on + strand, within LRK53_RS18280 at 33.806 kb on - strand, within LRK53_RS18280 at 33.806 kb on - strand, within LRK53_RS18280 at 33.806 kb on - strand, within LRK53_RS18280 at 33.811 kb on + strand, within LRK53_RS18280 at 33.811 kb on + strand, within LRK53_RS18280 at 33.811 kb on + strand, within LRK53_RS18280 at 33.812 kb on - strand, within LRK53_RS18280 at 33.812 kb on - strand, within LRK53_RS18280 at 33.812 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 33.845 kb on - strand, within LRK53_RS18280 at 34.068 kb on + strand at 34.069 kb on - strand at 34.149 kb on - strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.216 kb on + strand at 34.217 kb on - strand at 34.254 kb on + strand at 34.254 kb on + strand at 34.255 kb on - strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.351 kb on + strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.352 kb on - strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.402 kb on + strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.403 kb on - strand at 34.618 kb on + strand at 34.619 kb on - strand at 34.619 kb on - strand at 34.772 kb on - strand, within LRK53_RS18285 at 34.772 kb on - strand, within LRK53_RS18285 at 34.772 kb on - strand, within LRK53_RS18285 at 34.772 kb on - strand, within LRK53_RS18285 at 34.772 kb on - strand, within LRK53_RS18285 at 34.816 kb on - strand, within LRK53_RS18285 at 34.840 kb on + strand, within LRK53_RS18285 at 34.864 kb on - strand, within LRK53_RS18285 at 35.016 kb on - strand at 35.071 kb on + strand at 35.071 kb on + strand at 35.071 kb on + strand at 35.071 kb on + strand at 35.072 kb on - strand at 35.072 kb on - strand at 35.072 kb on - strand at 35.072 kb on - strand at 35.072 kb on - strand at 35.233 kb on + strand, within LRK53_RS18290 at 35.234 kb on - strand at 35.438 kb on + strand at 35.438 kb on + strand at 35.637 kb on + strand, within LRK53_RS18295 at 35.715 kb on + strand, within LRK53_RS18295 at 35.716 kb on - strand, within LRK53_RS18295 at 35.716 kb on - strand, within LRK53_RS18295 at 35.716 kb on - strand, within LRK53_RS18295
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 33,760 + LRK53_RS18280 0.69 +0.9 33,769 + LRK53_RS18280 0.70 -0.5 33,769 + LRK53_RS18280 0.70 -0.6 33,806 - LRK53_RS18280 0.75 -0.7 33,806 - LRK53_RS18280 0.75 +0.7 33,806 - LRK53_RS18280 0.75 -1.7 33,811 + LRK53_RS18280 0.75 -0.1 33,811 + LRK53_RS18280 0.75 -1.3 33,811 + LRK53_RS18280 0.75 -0.9 33,812 - LRK53_RS18280 0.76 +0.7 33,812 - LRK53_RS18280 0.76 +0.3 33,812 - LRK53_RS18280 0.76 -0.5 33,845 - LRK53_RS18280 0.80 -1.3 33,845 - LRK53_RS18280 0.80 +1.1 33,845 - LRK53_RS18280 0.80 +0.1 33,845 - LRK53_RS18280 0.80 -1.9 33,845 - LRK53_RS18280 0.80 -0.5 34,068 + -0.5 34,069 - +1.5 34,149 - -0.7 34,194 + -1.0 34,194 + -0.2 34,216 + +1.4 34,217 - -0.5 34,254 + -0.9 34,254 + -0.9 34,255 - -1.8 34,351 + -0.4 34,351 + -0.5 34,351 + +0.4 34,351 + -0.3 34,351 + +0.1 34,351 + -1.3 34,351 + +1.1 34,351 + +0.6 34,351 + -1.0 34,351 + +0.8 34,351 + +0.2 34,351 + -1.1 34,351 + -0.5 34,351 + -1.9 34,351 + -1.6 34,351 + +2.1 34,351 + -0.6 34,351 + -1.4 34,352 - -1.0 34,352 - +2.1 34,352 - -0.5 34,352 - +1.1 34,352 - -0.7 34,352 - +0.6 34,352 - +1.5 34,352 - -0.9 34,352 - -0.7 34,352 - -1.7 34,352 - -1.4 34,352 - -0.3 34,352 - -0.4 34,352 - +0.9 34,352 - -0.4 34,352 - -1.5 34,352 - +2.3 34,402 + -0.3 34,402 + -0.3 34,402 + -0.3 34,402 + +0.7 34,402 + -0.9 34,402 + +0.3 34,402 + -0.3 34,402 + -0.3 34,402 + -0.5 34,402 + +1.1 34,402 + +2.1 34,402 + -0.4 34,402 + -0.4 34,402 + +0.7 34,402 + -0.4 34,402 + -1.3 34,402 + +0.9 34,402 + -0.5 34,402 + +2.7 34,402 + +0.8 34,402 + -0.6 34,402 + -1.5 34,403 - -1.1 34,403 - -0.6 34,403 - +0.1 34,403 - -0.7 34,403 - +0.6 34,403 - +1.1 34,403 - -0.3 34,403 - -0.3 34,403 - -1.3 34,403 - -0.5 34,403 - -1.4 34,403 - -0.4 34,618 + +0.1 34,619 - +1.1 34,619 - +2.7 34,772 - LRK53_RS18285 0.28 -0.5 34,772 - LRK53_RS18285 0.28 -0.3 34,772 - LRK53_RS18285 0.28 +1.1 34,772 - LRK53_RS18285 0.28 -0.9 34,772 - LRK53_RS18285 0.28 -1.5 34,816 - LRK53_RS18285 0.49 -1.6 34,840 + LRK53_RS18285 0.60 -0.9 34,864 - LRK53_RS18285 0.71 -2.3 35,016 - -1.3 35,071 + -0.3 35,071 + -0.1 35,071 + -1.3 35,071 + -0.7 35,072 - -0.2 35,072 - +0.1 35,072 - +0.0 35,072 - +1.2 35,072 - +1.1 35,233 + LRK53_RS18290 0.89 -0.7 35,234 - -0.3 35,438 + +0.1 35,438 + +0.8 35,637 + LRK53_RS18295 0.22 -2.9 35,715 + LRK53_RS18295 0.35 -1.6 35,716 - LRK53_RS18295 0.35 +0.7 35,716 - LRK53_RS18295 0.35 +1.1 35,716 - LRK53_RS18295 0.35 -1.7
Or see this region's nucleotide sequence