Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18285

Experiment: NLDM_defined low phosphorus; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS18280 and LRK53_RS18285 are separated by 715 nucleotidesLRK53_RS18285 and LRK53_RS18290 are separated by 151 nucleotidesLRK53_RS18290 and LRK53_RS18295 are separated by 250 nucleotides LRK53_RS18280: LRK53_RS18280 - hypothetical protein, at 33,243 to 33,995 _RS18280 LRK53_RS18285: LRK53_RS18285 - hypothetical protein, at 34,711 to 34,926 _RS18285 LRK53_RS18290: LRK53_RS18290 - hypothetical protein, at 35,078 to 35,251 _RS18290 LRK53_RS18295: LRK53_RS18295 - hypothetical protein, at 35,502 to 36,113 _RS18295 Position (kb) 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 33.760 kb on + strand, within LRK53_RS18280at 33.769 kb on + strand, within LRK53_RS18280at 33.769 kb on + strand, within LRK53_RS18280at 33.806 kb on - strand, within LRK53_RS18280at 33.806 kb on - strand, within LRK53_RS18280at 33.806 kb on - strand, within LRK53_RS18280at 33.811 kb on + strand, within LRK53_RS18280at 33.811 kb on + strand, within LRK53_RS18280at 33.811 kb on + strand, within LRK53_RS18280at 33.812 kb on - strand, within LRK53_RS18280at 33.812 kb on - strand, within LRK53_RS18280at 33.812 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 33.845 kb on - strand, within LRK53_RS18280at 34.068 kb on + strandat 34.069 kb on - strandat 34.149 kb on - strandat 34.194 kb on + strandat 34.194 kb on + strandat 34.216 kb on + strandat 34.217 kb on - strandat 34.254 kb on + strandat 34.254 kb on + strandat 34.255 kb on - strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.351 kb on + strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.352 kb on - strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.402 kb on + strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.403 kb on - strandat 34.618 kb on + strandat 34.619 kb on - strandat 34.619 kb on - strandat 34.772 kb on - strand, within LRK53_RS18285at 34.772 kb on - strand, within LRK53_RS18285at 34.772 kb on - strand, within LRK53_RS18285at 34.772 kb on - strand, within LRK53_RS18285at 34.772 kb on - strand, within LRK53_RS18285at 34.816 kb on - strand, within LRK53_RS18285at 34.840 kb on + strand, within LRK53_RS18285at 34.864 kb on - strand, within LRK53_RS18285at 35.016 kb on - strandat 35.071 kb on + strandat 35.071 kb on + strandat 35.071 kb on + strandat 35.071 kb on + strandat 35.072 kb on - strandat 35.072 kb on - strandat 35.072 kb on - strandat 35.072 kb on - strandat 35.072 kb on - strandat 35.233 kb on + strand, within LRK53_RS18290at 35.234 kb on - strandat 35.438 kb on + strandat 35.438 kb on + strandat 35.637 kb on + strand, within LRK53_RS18295at 35.715 kb on + strand, within LRK53_RS18295at 35.716 kb on - strand, within LRK53_RS18295at 35.716 kb on - strand, within LRK53_RS18295at 35.716 kb on - strand, within LRK53_RS18295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
remove
33,760 + LRK53_RS18280 0.69 +0.9
33,769 + LRK53_RS18280 0.70 -0.5
33,769 + LRK53_RS18280 0.70 -0.6
33,806 - LRK53_RS18280 0.75 -0.7
33,806 - LRK53_RS18280 0.75 +0.7
33,806 - LRK53_RS18280 0.75 -1.7
33,811 + LRK53_RS18280 0.75 -0.1
33,811 + LRK53_RS18280 0.75 -1.3
33,811 + LRK53_RS18280 0.75 -0.9
33,812 - LRK53_RS18280 0.76 +0.7
33,812 - LRK53_RS18280 0.76 +0.3
33,812 - LRK53_RS18280 0.76 -0.5
33,845 - LRK53_RS18280 0.80 -1.3
33,845 - LRK53_RS18280 0.80 +1.1
33,845 - LRK53_RS18280 0.80 +0.1
33,845 - LRK53_RS18280 0.80 -1.9
33,845 - LRK53_RS18280 0.80 -0.5
34,068 + -0.5
34,069 - +1.5
34,149 - -0.7
34,194 + -1.0
34,194 + -0.2
34,216 + +1.4
34,217 - -0.5
34,254 + -0.9
34,254 + -0.9
34,255 - -1.8
34,351 + -0.4
34,351 + -0.5
34,351 + +0.4
34,351 + -0.3
34,351 + +0.1
34,351 + -1.3
34,351 + +1.1
34,351 + +0.6
34,351 + -1.0
34,351 + +0.8
34,351 + +0.2
34,351 + -1.1
34,351 + -0.5
34,351 + -1.9
34,351 + -1.6
34,351 + +2.1
34,351 + -0.6
34,351 + -1.4
34,352 - -1.0
34,352 - +2.1
34,352 - -0.5
34,352 - +1.1
34,352 - -0.7
34,352 - +0.6
34,352 - +1.5
34,352 - -0.9
34,352 - -0.7
34,352 - -1.7
34,352 - -1.4
34,352 - -0.3
34,352 - -0.4
34,352 - +0.9
34,352 - -0.4
34,352 - -1.5
34,352 - +2.3
34,402 + -0.3
34,402 + -0.3
34,402 + -0.3
34,402 + +0.7
34,402 + -0.9
34,402 + +0.3
34,402 + -0.3
34,402 + -0.3
34,402 + -0.5
34,402 + +1.1
34,402 + +2.1
34,402 + -0.4
34,402 + -0.4
34,402 + +0.7
34,402 + -0.4
34,402 + -1.3
34,402 + +0.9
34,402 + -0.5
34,402 + +2.7
34,402 + +0.8
34,402 + -0.6
34,402 + -1.5
34,403 - -1.1
34,403 - -0.6
34,403 - +0.1
34,403 - -0.7
34,403 - +0.6
34,403 - +1.1
34,403 - -0.3
34,403 - -0.3
34,403 - -1.3
34,403 - -0.5
34,403 - -1.4
34,403 - -0.4
34,618 + +0.1
34,619 - +1.1
34,619 - +2.7
34,772 - LRK53_RS18285 0.28 -0.5
34,772 - LRK53_RS18285 0.28 -0.3
34,772 - LRK53_RS18285 0.28 +1.1
34,772 - LRK53_RS18285 0.28 -0.9
34,772 - LRK53_RS18285 0.28 -1.5
34,816 - LRK53_RS18285 0.49 -1.6
34,840 + LRK53_RS18285 0.60 -0.9
34,864 - LRK53_RS18285 0.71 -2.3
35,016 - -1.3
35,071 + -0.3
35,071 + -0.1
35,071 + -1.3
35,071 + -0.7
35,072 - -0.2
35,072 - +0.1
35,072 - +0.0
35,072 - +1.2
35,072 - +1.1
35,233 + LRK53_RS18290 0.89 -0.7
35,234 - -0.3
35,438 + +0.1
35,438 + +0.8
35,637 + LRK53_RS18295 0.22 -2.9
35,715 + LRK53_RS18295 0.35 -1.6
35,716 - LRK53_RS18295 0.35 +0.7
35,716 - LRK53_RS18295 0.35 +1.1
35,716 - LRK53_RS18295 0.35 -1.7

Or see this region's nucleotide sequence