Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17885 and LRK53_RS17890 are separated by 109 nucleotides LRK53_RS17890 and LRK53_RS17895 are separated by 78 nucleotides LRK53_RS17895 and LRK53_RS17900 are separated by 56 nucleotides LRK53_RS17900 and LRK53_RS17905 overlap by 4 nucleotides
LRK53_RS17885: LRK53_RS17885 - orotate phosphoribosyltransferase, at 3,929,273 to 3,929,920
_RS17885
LRK53_RS17890: LRK53_RS17890 - hypothetical protein, at 3,930,030 to 3,930,674
_RS17890
LRK53_RS17895: LRK53_RS17895 - phosphomannomutase/phosphoglucomutase, at 3,930,753 to 3,933,062
_RS17895
LRK53_RS17900: LRK53_RS17900 - dUTP diphosphatase, at 3,933,119 to 3,933,577
_RS17900
LRK53_RS17905: LRK53_RS17905 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 3,933,574 to 3,934,779
_RS17905
Position (kb)
3930
3931
3932
3933
3934 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3929.841 kb on - strand, within LRK53_RS17885 at 3929.891 kb on + strand at 3929.981 kb on + strand at 3929.981 kb on + strand at 3929.981 kb on + strand at 3929.981 kb on + strand at 3929.981 kb on + strand at 3929.981 kb on + strand at 3929.982 kb on - strand at 3929.982 kb on - strand at 3929.982 kb on - strand at 3929.982 kb on - strand at 3929.982 kb on - strand at 3930.003 kb on + strand at 3930.003 kb on + strand at 3930.004 kb on - strand at 3930.004 kb on - strand at 3930.004 kb on - strand at 3930.004 kb on - strand at 3930.004 kb on - strand at 3930.005 kb on + strand at 3930.005 kb on + strand at 3930.005 kb on + strand at 3930.005 kb on + strand at 3930.005 kb on + strand at 3930.005 kb on + strand at 3930.005 kb on + strand at 3930.005 kb on + strand at 3930.005 kb on + strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.006 kb on - strand at 3930.025 kb on + strand at 3930.025 kb on + strand at 3930.114 kb on + strand, within LRK53_RS17890 at 3930.114 kb on + strand, within LRK53_RS17890 at 3930.114 kb on + strand, within LRK53_RS17890 at 3930.114 kb on + strand, within LRK53_RS17890 at 3930.114 kb on + strand, within LRK53_RS17890 at 3930.114 kb on + strand, within LRK53_RS17890 at 3930.115 kb on - strand, within LRK53_RS17890 at 3930.115 kb on - strand, within LRK53_RS17890 at 3930.115 kb on - strand, within LRK53_RS17890 at 3930.115 kb on - strand, within LRK53_RS17890 at 3930.115 kb on - strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.180 kb on + strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.181 kb on - strand, within LRK53_RS17890 at 3930.186 kb on + strand, within LRK53_RS17890 at 3930.364 kb on - strand, within LRK53_RS17890 at 3930.364 kb on - strand, within LRK53_RS17890 at 3930.596 kb on + strand, within LRK53_RS17890 at 3930.631 kb on - strand at 3930.631 kb on - strand at 3930.673 kb on - strand at 3930.754 kb on + strand at 3932.270 kb on - strand, within LRK53_RS17895 at 3933.063 kb on - strand at 3933.063 kb on - strand at 3933.063 kb on - strand at 3933.063 kb on - strand at 3933.063 kb on - strand at 3933.252 kb on + strand, within LRK53_RS17900 at 3933.253 kb on - strand, within LRK53_RS17900 at 3933.253 kb on - strand, within LRK53_RS17900 at 3933.253 kb on - strand, within LRK53_RS17900 at 3933.253 kb on - strand, within LRK53_RS17900
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 3,929,841 - LRK53_RS17885 0.88 +1.2 3,929,891 + -1.1 3,929,981 + -1.5 3,929,981 + -0.2 3,929,981 + +0.6 3,929,981 + +1.2 3,929,981 + -0.6 3,929,981 + +0.2 3,929,982 - +1.2 3,929,982 - -0.1 3,929,982 - -1.5 3,929,982 - +1.2 3,929,982 - -0.5 3,930,003 + +0.6 3,930,003 + +0.2 3,930,004 - +0.2 3,930,004 - +1.2 3,930,004 - -0.0 3,930,004 - -2.0 3,930,004 - +1.2 3,930,005 + -0.1 3,930,005 + +0.2 3,930,005 + -1.6 3,930,005 + -0.1 3,930,005 + -0.4 3,930,005 + +0.7 3,930,005 + -1.4 3,930,005 + -0.2 3,930,005 + +1.2 3,930,006 - -0.0 3,930,006 - +1.4 3,930,006 - +1.0 3,930,006 - -1.2 3,930,006 - -0.5 3,930,006 - -0.2 3,930,006 - +0.0 3,930,006 - +0.8 3,930,006 - -0.2 3,930,006 - +0.7 3,930,006 - -0.4 3,930,025 + -0.5 3,930,025 + -3.0 3,930,114 + LRK53_RS17890 0.13 -0.1 3,930,114 + LRK53_RS17890 0.13 -0.7 3,930,114 + LRK53_RS17890 0.13 +2.2 3,930,114 + LRK53_RS17890 0.13 +0.4 3,930,114 + LRK53_RS17890 0.13 +1.2 3,930,114 + LRK53_RS17890 0.13 +2.2 3,930,115 - LRK53_RS17890 0.13 -2.9 3,930,115 - LRK53_RS17890 0.13 -0.1 3,930,115 - LRK53_RS17890 0.13 +0.2 3,930,115 - LRK53_RS17890 0.13 +0.3 3,930,115 - LRK53_RS17890 0.13 -0.6 3,930,180 + LRK53_RS17890 0.23 +0.5 3,930,180 + LRK53_RS17890 0.23 -0.5 3,930,180 + LRK53_RS17890 0.23 +0.1 3,930,180 + LRK53_RS17890 0.23 -0.3 3,930,180 + LRK53_RS17890 0.23 +1.2 3,930,180 + LRK53_RS17890 0.23 +0.0 3,930,180 + LRK53_RS17890 0.23 -1.2 3,930,180 + LRK53_RS17890 0.23 -0.2 3,930,180 + LRK53_RS17890 0.23 +1.7 3,930,180 + LRK53_RS17890 0.23 -1.5 3,930,180 + LRK53_RS17890 0.23 -0.2 3,930,180 + LRK53_RS17890 0.23 -1.7 3,930,180 + LRK53_RS17890 0.23 +0.8 3,930,181 - LRK53_RS17890 0.23 -0.4 3,930,181 - LRK53_RS17890 0.23 +0.2 3,930,181 - LRK53_RS17890 0.23 -1.7 3,930,181 - LRK53_RS17890 0.23 -0.8 3,930,181 - LRK53_RS17890 0.23 -0.2 3,930,181 - LRK53_RS17890 0.23 -0.4 3,930,181 - LRK53_RS17890 0.23 -0.5 3,930,181 - LRK53_RS17890 0.23 -0.6 3,930,181 - LRK53_RS17890 0.23 -0.4 3,930,181 - LRK53_RS17890 0.23 -0.1 3,930,181 - LRK53_RS17890 0.23 -0.8 3,930,181 - LRK53_RS17890 0.23 -2.1 3,930,181 - LRK53_RS17890 0.23 +1.6 3,930,181 - LRK53_RS17890 0.23 -2.1 3,930,181 - LRK53_RS17890 0.23 +0.2 3,930,181 - LRK53_RS17890 0.23 -0.4 3,930,181 - LRK53_RS17890 0.23 -1.6 3,930,181 - LRK53_RS17890 0.23 +1.0 3,930,186 + LRK53_RS17890 0.24 -1.5 3,930,364 - LRK53_RS17890 0.52 +1.2 3,930,364 - LRK53_RS17890 0.52 -2.9 3,930,596 + LRK53_RS17890 0.88 +2.2 3,930,631 - -0.1 3,930,631 - +1.1 3,930,673 - -0.6 3,930,754 + -1.3 3,932,270 - LRK53_RS17895 0.66 -1.0 3,933,063 - -1.3 3,933,063 - +0.1 3,933,063 - -0.4 3,933,063 - +2.2 3,933,063 - +0.2 3,933,252 + LRK53_RS17900 0.29 -0.8 3,933,253 - LRK53_RS17900 0.29 +1.2 3,933,253 - LRK53_RS17900 0.29 -1.1 3,933,253 - LRK53_RS17900 0.29 +1.2 3,933,253 - LRK53_RS17900 0.29 -0.4
Or see this region's nucleotide sequence