Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16675

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16665 and LRK53_RS16670 overlap by 8 nucleotidesLRK53_RS16670 and LRK53_RS16675 overlap by 4 nucleotidesLRK53_RS16675 and LRK53_RS16680 overlap by 4 nucleotides LRK53_RS16665: LRK53_RS16665 - VWA domain-containing protein, at 3,667,171 to 3,668,160 _RS16665 LRK53_RS16670: LRK53_RS16670 - DUF4381 family protein, at 3,668,153 to 3,668,674 _RS16670 LRK53_RS16675: LRK53_RS16675 - DUF58 domain-containing protein, at 3,668,671 to 3,669,606 _RS16675 LRK53_RS16680: LRK53_RS16680 - MoxR family ATPase, at 3,669,603 to 3,670,598 _RS16680 Position (kb) 3668 3669 3670Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3667.715 kb on + strand, within LRK53_RS16665at 3667.715 kb on + strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3667.716 kb on - strand, within LRK53_RS16665at 3668.271 kb on + strand, within LRK53_RS16670at 3668.271 kb on + strand, within LRK53_RS16670at 3668.271 kb on + strand, within LRK53_RS16670at 3668.271 kb on + strand, within LRK53_RS16670at 3668.271 kb on + strand, within LRK53_RS16670at 3668.271 kb on + strand, within LRK53_RS16670at 3668.271 kb on + strand, within LRK53_RS16670at 3668.272 kb on - strand, within LRK53_RS16670at 3668.272 kb on - strand, within LRK53_RS16670at 3668.272 kb on - strand, within LRK53_RS16670at 3668.272 kb on - strand, within LRK53_RS16670at 3668.272 kb on - strand, within LRK53_RS16670at 3668.564 kb on + strand, within LRK53_RS16670at 3668.564 kb on + strand, within LRK53_RS16670at 3668.565 kb on - strand, within LRK53_RS16670at 3668.565 kb on - strand, within LRK53_RS16670at 3669.452 kb on + strand, within LRK53_RS16675at 3669.452 kb on + strand, within LRK53_RS16675at 3669.453 kb on - strand, within LRK53_RS16675at 3669.676 kb on + strandat 3669.676 kb on + strandat 3669.676 kb on + strandat 3669.676 kb on + strandat 3669.738 kb on + strand, within LRK53_RS16680at 3669.738 kb on + strand, within LRK53_RS16680at 3669.738 kb on + strand, within LRK53_RS16680at 3669.738 kb on + strand, within LRK53_RS16680at 3669.738 kb on + strand, within LRK53_RS16680at 3669.738 kb on + strand, within LRK53_RS16680at 3669.738 kb on + strand, within LRK53_RS16680at 3669.739 kb on - strand, within LRK53_RS16680at 3669.739 kb on - strand, within LRK53_RS16680at 3669.739 kb on - strand, within LRK53_RS16680at 3669.739 kb on - strand, within LRK53_RS16680at 3669.739 kb on - strand, within LRK53_RS16680at 3669.739 kb on - strand, within LRK53_RS16680at 3669.742 kb on + strand, within LRK53_RS16680at 3669.742 kb on + strand, within LRK53_RS16680at 3669.742 kb on + strand, within LRK53_RS16680at 3669.742 kb on + strand, within LRK53_RS16680at 3669.742 kb on + strand, within LRK53_RS16680at 3669.742 kb on + strand, within LRK53_RS16680at 3669.743 kb on - strand, within LRK53_RS16680at 3669.743 kb on - strand, within LRK53_RS16680at 3669.743 kb on - strand, within LRK53_RS16680at 3669.743 kb on - strand, within LRK53_RS16680at 3669.743 kb on - strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.889 kb on + strand, within LRK53_RS16680at 3669.890 kb on - strand, within LRK53_RS16680at 3669.890 kb on - strand, within LRK53_RS16680at 3669.890 kb on - strand, within LRK53_RS16680at 3669.890 kb on - strand, within LRK53_RS16680at 3670.592 kb on + strandat 3670.592 kb on + strandat 3670.592 kb on + strandat 3670.592 kb on + strandat 3670.592 kb on + strandat 3670.593 kb on - strandat 3670.593 kb on - strandat 3670.593 kb on - strandat 3670.593 kb on - strandat 3670.593 kb on - strandat 3670.593 kb on - strandat 3670.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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3,667,715 + LRK53_RS16665 0.55 +0.4
3,667,715 + LRK53_RS16665 0.55 +1.2
3,667,716 - LRK53_RS16665 0.55 -1.0
3,667,716 - LRK53_RS16665 0.55 -2.5
3,667,716 - LRK53_RS16665 0.55 +2.0
3,667,716 - LRK53_RS16665 0.55 -1.6
3,667,716 - LRK53_RS16665 0.55 -0.6
3,667,716 - LRK53_RS16665 0.55 -0.0
3,667,716 - LRK53_RS16665 0.55 +1.2
3,667,716 - LRK53_RS16665 0.55 +0.0
3,667,716 - LRK53_RS16665 0.55 -0.1
3,668,271 + LRK53_RS16670 0.23 +1.2
3,668,271 + LRK53_RS16670 0.23 +0.2
3,668,271 + LRK53_RS16670 0.23 +1.2
3,668,271 + LRK53_RS16670 0.23 -1.9
3,668,271 + LRK53_RS16670 0.23 -0.8
3,668,271 + LRK53_RS16670 0.23 -0.0
3,668,271 + LRK53_RS16670 0.23 -0.8
3,668,272 - LRK53_RS16670 0.23 +0.2
3,668,272 - LRK53_RS16670 0.23 -0.3
3,668,272 - LRK53_RS16670 0.23 -0.1
3,668,272 - LRK53_RS16670 0.23 -1.8
3,668,272 - LRK53_RS16670 0.23 -0.8
3,668,564 + LRK53_RS16670 0.79 +1.5
3,668,564 + LRK53_RS16670 0.79 +0.0
3,668,565 - LRK53_RS16670 0.79 +0.2
3,668,565 - LRK53_RS16670 0.79 -0.0
3,669,452 + LRK53_RS16675 0.83 -1.8
3,669,452 + LRK53_RS16675 0.83 -0.3
3,669,453 - LRK53_RS16675 0.84 -1.4
3,669,676 + +0.1
3,669,676 + -1.0
3,669,676 + +0.9
3,669,676 + -1.6
3,669,738 + LRK53_RS16680 0.14 -0.6
3,669,738 + LRK53_RS16680 0.14 -0.9
3,669,738 + LRK53_RS16680 0.14 -0.7
3,669,738 + LRK53_RS16680 0.14 +1.3
3,669,738 + LRK53_RS16680 0.14 +0.8
3,669,738 + LRK53_RS16680 0.14 -1.8
3,669,738 + LRK53_RS16680 0.14 -0.2
3,669,739 - LRK53_RS16680 0.14 -1.0
3,669,739 - LRK53_RS16680 0.14 +1.2
3,669,739 - LRK53_RS16680 0.14 +0.6
3,669,739 - LRK53_RS16680 0.14 -1.5
3,669,739 - LRK53_RS16680 0.14 -1.2
3,669,739 - LRK53_RS16680 0.14 -0.8
3,669,742 + LRK53_RS16680 0.14 -1.6
3,669,742 + LRK53_RS16680 0.14 -1.1
3,669,742 + LRK53_RS16680 0.14 -0.8
3,669,742 + LRK53_RS16680 0.14 +0.6
3,669,742 + LRK53_RS16680 0.14 -0.1
3,669,742 + LRK53_RS16680 0.14 -0.7
3,669,743 - LRK53_RS16680 0.14 +0.2
3,669,743 - LRK53_RS16680 0.14 -0.8
3,669,743 - LRK53_RS16680 0.14 -0.4
3,669,743 - LRK53_RS16680 0.14 +0.5
3,669,743 - LRK53_RS16680 0.14 -1.4
3,669,889 + LRK53_RS16680 0.29 -0.8
3,669,889 + LRK53_RS16680 0.29 +0.1
3,669,889 + LRK53_RS16680 0.29 -0.6
3,669,889 + LRK53_RS16680 0.29 -0.8
3,669,889 + LRK53_RS16680 0.29 +0.6
3,669,889 + LRK53_RS16680 0.29 +2.2
3,669,889 + LRK53_RS16680 0.29 -0.5
3,669,889 + LRK53_RS16680 0.29 +1.8
3,669,889 + LRK53_RS16680 0.29 +0.2
3,669,889 + LRK53_RS16680 0.29 -2.0
3,669,889 + LRK53_RS16680 0.29 -0.5
3,669,890 - LRK53_RS16680 0.29 -0.1
3,669,890 - LRK53_RS16680 0.29 -0.7
3,669,890 - LRK53_RS16680 0.29 +0.1
3,669,890 - LRK53_RS16680 0.29 -0.9
3,670,592 + -0.8
3,670,592 + +0.9
3,670,592 + -0.8
3,670,592 + +1.2
3,670,592 + -2.8
3,670,593 - +0.2
3,670,593 - -0.8
3,670,593 - -0.6
3,670,593 - -0.1
3,670,593 - +0.9
3,670,593 - -0.1
3,670,593 - -0.4

Or see this region's nucleotide sequence