Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15870 and LRK53_RS15875 are separated by 141 nucleotides LRK53_RS15875 and LRK53_RS15880 are separated by 230 nucleotides LRK53_RS15880 and LRK53_RS15885 are separated by 79 nucleotides
LRK53_RS15870: LRK53_RS15870 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,470,640 to 3,472,775
_RS15870
LRK53_RS15875: LRK53_RS15875 - hypothetical protein, at 3,472,917 to 3,473,396
_RS15875
LRK53_RS15880: LRK53_RS15880 - IS5 family transposase, at 3,473,627 to 3,474,757
_RS15880
LRK53_RS15885: LRK53_RS15885 - ATP-dependent RNA helicase HrpA, at 3,474,837 to 3,478,868
_RS15885
Position (kb)
3473
3474
3475 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3472.792 kb on + strand at 3472.808 kb on + strand at 3473.154 kb on + strand, within LRK53_RS15875 at 3473.155 kb on - strand, within LRK53_RS15875 at 3473.155 kb on - strand, within LRK53_RS15875 at 3473.349 kb on + strand at 3473.349 kb on + strand at 3473.349 kb on + strand at 3473.349 kb on + strand at 3473.349 kb on + strand at 3473.349 kb on + strand at 3473.350 kb on - strand at 3473.350 kb on - strand at 3473.350 kb on - strand at 3473.350 kb on - strand at 3473.350 kb on - strand at 3473.350 kb on - strand at 3473.889 kb on - strand, within LRK53_RS15880 at 3473.889 kb on - strand, within LRK53_RS15880 at 3473.889 kb on - strand, within LRK53_RS15880 at 3474.994 kb on + strand at 3474.995 kb on - strand at 3475.091 kb on - strand at 3475.429 kb on + strand, within LRK53_RS15885 at 3475.429 kb on + strand, within LRK53_RS15885 at 3475.429 kb on + strand, within LRK53_RS15885 at 3475.429 kb on + strand, within LRK53_RS15885 at 3475.429 kb on + strand, within LRK53_RS15885 at 3475.429 kb on + strand, within LRK53_RS15885 at 3475.429 kb on + strand, within LRK53_RS15885 at 3475.429 kb on + strand, within LRK53_RS15885 at 3475.430 kb on - strand, within LRK53_RS15885 at 3475.430 kb on - strand, within LRK53_RS15885 at 3475.430 kb on - strand, within LRK53_RS15885 at 3475.430 kb on - strand, within LRK53_RS15885
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 3,472,792 + +0.7 3,472,808 + -1.4 3,473,154 + LRK53_RS15875 0.49 +0.5 3,473,155 - LRK53_RS15875 0.50 +0.7 3,473,155 - LRK53_RS15875 0.50 -0.1 3,473,349 + -0.1 3,473,349 + -1.6 3,473,349 + -0.7 3,473,349 + +0.2 3,473,349 + -0.7 3,473,349 + +2.8 3,473,350 - +1.8 3,473,350 - -0.7 3,473,350 - -1.2 3,473,350 - -0.0 3,473,350 - -2.3 3,473,350 - +0.7 3,473,889 - LRK53_RS15880 0.23 -2.1 3,473,889 - LRK53_RS15880 0.23 -0.5 3,473,889 - LRK53_RS15880 0.23 -1.6 3,474,994 + -0.3 3,474,995 - -0.7 3,475,091 - +2.8 3,475,429 + LRK53_RS15885 0.15 +0.3 3,475,429 + LRK53_RS15885 0.15 +0.3 3,475,429 + LRK53_RS15885 0.15 -0.9 3,475,429 + LRK53_RS15885 0.15 -0.2 3,475,429 + LRK53_RS15885 0.15 +0.6 3,475,429 + LRK53_RS15885 0.15 -0.0 3,475,429 + LRK53_RS15885 0.15 -0.7 3,475,429 + LRK53_RS15885 0.15 -0.9 3,475,430 - LRK53_RS15885 0.15 +0.8 3,475,430 - LRK53_RS15885 0.15 -0.3 3,475,430 - LRK53_RS15885 0.15 +0.3 3,475,430 - LRK53_RS15885 0.15 -2.2
Or see this region's nucleotide sequence