Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15655

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15650 and LRK53_RS15655 are separated by 149 nucleotidesLRK53_RS15655 and LRK53_RS15660 are separated by 8 nucleotidesLRK53_RS15660 and LRK53_RS15665 are separated by 101 nucleotides LRK53_RS15650: LRK53_RS15650 - DUF2066 domain-containing protein, at 3,428,775 to 3,429,755 _RS15650 LRK53_RS15655: LRK53_RS15655 - phosphoribosylformylglycinamidine cyclo-ligase, at 3,429,905 to 3,430,933 _RS15655 LRK53_RS15660: LRK53_RS15660 - phosphoribosylglycinamide formyltransferase, at 3,430,942 to 3,431,631 _RS15660 LRK53_RS15665: LRK53_RS15665 - DUF3108 domain-containing protein, at 3,431,733 to 3,432,440 _RS15665 Position (kb) 3429 3430 3431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3428.980 kb on + strand, within LRK53_RS15650at 3428.980 kb on + strand, within LRK53_RS15650at 3428.981 kb on - strand, within LRK53_RS15650at 3429.212 kb on - strand, within LRK53_RS15650at 3429.212 kb on - strand, within LRK53_RS15650at 3429.212 kb on - strand, within LRK53_RS15650at 3429.402 kb on - strand, within LRK53_RS15650at 3429.545 kb on - strand, within LRK53_RS15650at 3429.870 kb on + strandat 3429.924 kb on - strandat 3429.924 kb on - strandat 3430.062 kb on - strand, within LRK53_RS15655at 3430.220 kb on + strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.221 kb on - strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.343 kb on + strand, within LRK53_RS15655at 3430.344 kb on - strand, within LRK53_RS15655at 3430.344 kb on - strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.358 kb on + strand, within LRK53_RS15655at 3430.359 kb on - strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.580 kb on + strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3430.581 kb on - strand, within LRK53_RS15655at 3431.138 kb on - strand, within LRK53_RS15660at 3431.207 kb on + strand, within LRK53_RS15660at 3431.207 kb on + strand, within LRK53_RS15660at 3431.207 kb on + strand, within LRK53_RS15660at 3431.208 kb on - strand, within LRK53_RS15660at 3431.208 kb on - strand, within LRK53_RS15660at 3431.208 kb on - strand, within LRK53_RS15660at 3431.208 kb on - strand, within LRK53_RS15660at 3431.208 kb on - strand, within LRK53_RS15660at 3431.299 kb on + strand, within LRK53_RS15660at 3431.300 kb on - strand, within LRK53_RS15660at 3431.487 kb on - strand, within LRK53_RS15660at 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.696 kb on + strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.697 kb on - strandat 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.832 kb on + strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.833 kb on - strand, within LRK53_RS15665at 3431.910 kb on + strand, within LRK53_RS15665at 3431.910 kb on + strand, within LRK53_RS15665at 3431.911 kb on - strand, within LRK53_RS15665at 3431.911 kb on - strand, within LRK53_RS15665at 3431.911 kb on - strand, within LRK53_RS15665

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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3,428,980 + LRK53_RS15650 0.21 -1.2
3,428,980 + LRK53_RS15650 0.21 -0.2
3,428,981 - LRK53_RS15650 0.21 +0.5
3,429,212 - LRK53_RS15650 0.45 +0.6
3,429,212 - LRK53_RS15650 0.45 -0.6
3,429,212 - LRK53_RS15650 0.45 -0.9
3,429,402 - LRK53_RS15650 0.64 -0.9
3,429,545 - LRK53_RS15650 0.78 -1.1
3,429,870 + +0.5
3,429,924 - -1.1
3,429,924 - -1.1
3,430,062 - LRK53_RS15655 0.15 -1.8
3,430,220 + LRK53_RS15655 0.31 -0.7
3,430,221 - LRK53_RS15655 0.31 -1.3
3,430,221 - LRK53_RS15655 0.31 -1.6
3,430,221 - LRK53_RS15655 0.31 -1.5
3,430,221 - LRK53_RS15655 0.31 -1.3
3,430,343 + LRK53_RS15655 0.43 -0.2
3,430,343 + LRK53_RS15655 0.43 +1.3
3,430,343 + LRK53_RS15655 0.43 -1.7
3,430,343 + LRK53_RS15655 0.43 -0.7
3,430,343 + LRK53_RS15655 0.43 -1.7
3,430,343 + LRK53_RS15655 0.43 -0.3
3,430,343 + LRK53_RS15655 0.43 -1.2
3,430,343 + LRK53_RS15655 0.43 -1.2
3,430,344 - LRK53_RS15655 0.43 -0.3
3,430,344 - LRK53_RS15655 0.43 +1.3
3,430,358 + LRK53_RS15655 0.44 +0.9
3,430,358 + LRK53_RS15655 0.44 +1.0
3,430,358 + LRK53_RS15655 0.44 -1.5
3,430,358 + LRK53_RS15655 0.44 -0.3
3,430,358 + LRK53_RS15655 0.44 -1.2
3,430,358 + LRK53_RS15655 0.44 -1.0
3,430,359 - LRK53_RS15655 0.44 +0.8
3,430,580 + LRK53_RS15655 0.66 -1.3
3,430,580 + LRK53_RS15655 0.66 -0.3
3,430,580 + LRK53_RS15655 0.66 +0.1
3,430,580 + LRK53_RS15655 0.66 -1.5
3,430,580 + LRK53_RS15655 0.66 -0.7
3,430,580 + LRK53_RS15655 0.66 -0.7
3,430,580 + LRK53_RS15655 0.66 -0.7
3,430,580 + LRK53_RS15655 0.66 -1.7
3,430,580 + LRK53_RS15655 0.66 -0.7
3,430,581 - LRK53_RS15655 0.66 +0.3
3,430,581 - LRK53_RS15655 0.66 -0.3
3,430,581 - LRK53_RS15655 0.66 -1.3
3,430,581 - LRK53_RS15655 0.66 -0.9
3,430,581 - LRK53_RS15655 0.66 +1.9
3,430,581 - LRK53_RS15655 0.66 -1.2
3,430,581 - LRK53_RS15655 0.66 -1.1
3,430,581 - LRK53_RS15655 0.66 -0.3
3,431,138 - LRK53_RS15660 0.28 +0.8
3,431,207 + LRK53_RS15660 0.38 +0.7
3,431,207 + LRK53_RS15660 0.38 +1.3
3,431,207 + LRK53_RS15660 0.38 +1.0
3,431,208 - LRK53_RS15660 0.39 -2.6
3,431,208 - LRK53_RS15660 0.39 -0.0
3,431,208 - LRK53_RS15660 0.39 -1.9
3,431,208 - LRK53_RS15660 0.39 +4.3
3,431,208 - LRK53_RS15660 0.39 -0.3
3,431,299 + LRK53_RS15660 0.52 -1.7
3,431,300 - LRK53_RS15660 0.52 -0.9
3,431,487 - LRK53_RS15660 0.79 +0.7
3,431,696 + -2.1
3,431,696 + +0.0
3,431,696 + -0.5
3,431,696 + +0.7
3,431,696 + +0.5
3,431,696 + -0.2
3,431,696 + -1.5
3,431,696 + -0.9
3,431,696 + -0.3
3,431,696 + +0.5
3,431,696 + -0.4
3,431,696 + +0.9
3,431,696 + -0.5
3,431,697 - -0.2
3,431,697 - -1.3
3,431,697 - -1.1
3,431,697 - +0.3
3,431,697 - +0.3
3,431,697 - -0.4
3,431,697 - +0.1
3,431,697 - -0.7
3,431,697 - +0.3
3,431,697 - -1.1
3,431,697 - +1.3
3,431,832 + LRK53_RS15665 0.14 -1.5
3,431,832 + LRK53_RS15665 0.14 +0.7
3,431,832 + LRK53_RS15665 0.14 -0.1
3,431,832 + LRK53_RS15665 0.14 -0.3
3,431,832 + LRK53_RS15665 0.14 -0.2
3,431,832 + LRK53_RS15665 0.14 +1.3
3,431,832 + LRK53_RS15665 0.14 -0.1
3,431,832 + LRK53_RS15665 0.14 +1.1
3,431,832 + LRK53_RS15665 0.14 +0.7
3,431,832 + LRK53_RS15665 0.14 -0.7
3,431,832 + LRK53_RS15665 0.14 +1.3
3,431,832 + LRK53_RS15665 0.14 -0.7
3,431,832 + LRK53_RS15665 0.14 +0.4
3,431,832 + LRK53_RS15665 0.14 -1.5
3,431,832 + LRK53_RS15665 0.14 +0.7
3,431,832 + LRK53_RS15665 0.14 -2.3
3,431,832 + LRK53_RS15665 0.14 +0.5
3,431,832 + LRK53_RS15665 0.14 -1.1
3,431,832 + LRK53_RS15665 0.14 +0.8
3,431,832 + LRK53_RS15665 0.14 -0.7
3,431,832 + LRK53_RS15665 0.14 +1.0
3,431,832 + LRK53_RS15665 0.14 +0.5
3,431,832 + LRK53_RS15665 0.14 -1.1
3,431,832 + LRK53_RS15665 0.14 -0.1
3,431,833 - LRK53_RS15665 0.14 +0.3
3,431,833 - LRK53_RS15665 0.14 +1.3
3,431,833 - LRK53_RS15665 0.14 -0.3
3,431,833 - LRK53_RS15665 0.14 +3.3
3,431,833 - LRK53_RS15665 0.14 -1.2
3,431,833 - LRK53_RS15665 0.14 -0.3
3,431,833 - LRK53_RS15665 0.14 -0.3
3,431,833 - LRK53_RS15665 0.14 -0.3
3,431,833 - LRK53_RS15665 0.14 +0.1
3,431,833 - LRK53_RS15665 0.14 -0.7
3,431,833 - LRK53_RS15665 0.14 -0.7
3,431,833 - LRK53_RS15665 0.14 -2.9
3,431,833 - LRK53_RS15665 0.14 -1.2
3,431,833 - LRK53_RS15665 0.14 +1.6
3,431,833 - LRK53_RS15665 0.14 -0.7
3,431,833 - LRK53_RS15665 0.14 -0.7
3,431,833 - LRK53_RS15665 0.14 +0.3
3,431,833 - LRK53_RS15665 0.14 -1.1
3,431,833 - LRK53_RS15665 0.14 +1.3
3,431,833 - LRK53_RS15665 0.14 -0.1
3,431,833 - LRK53_RS15665 0.14 -0.6
3,431,833 - LRK53_RS15665 0.14 -1.2
3,431,833 - LRK53_RS15665 0.14 +0.3
3,431,910 + LRK53_RS15665 0.25 +0.3
3,431,910 + LRK53_RS15665 0.25 -0.3
3,431,911 - LRK53_RS15665 0.25 +2.8
3,431,911 - LRK53_RS15665 0.25 +0.6
3,431,911 - LRK53_RS15665 0.25 +1.4

Or see this region's nucleotide sequence