Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15175

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15165 and LRK53_RS15170 are separated by 34 nucleotidesLRK53_RS15170 and LRK53_RS15175 overlap by 1 nucleotidesLRK53_RS15175 and LRK53_RS15180 are separated by 169 nucleotides LRK53_RS15165: LRK53_RS15165 - flagellar hook capping protein, at 3,311,753 to 3,312,391 _RS15165 LRK53_RS15170: LRK53_RS15170 - flagellar basal body rod protein FlgC, at 3,312,426 to 3,312,845 _RS15170 LRK53_RS15175: LRK53_RS15175 - flagellar basal body rod protein FlgB, at 3,312,845 to 3,313,249 _RS15175 LRK53_RS15180: LRK53_RS15180 - chemotaxis protein, at 3,313,419 to 3,314,357 _RS15180 Position (kb) 3312 3313 3314Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3311.862 kb on + strand, within LRK53_RS15165at 3311.862 kb on + strand, within LRK53_RS15165at 3311.862 kb on + strand, within LRK53_RS15165at 3311.863 kb on - strand, within LRK53_RS15165at 3311.863 kb on - strand, within LRK53_RS15165at 3311.863 kb on - strand, within LRK53_RS15165at 3311.863 kb on - strand, within LRK53_RS15165at 3311.863 kb on - strand, within LRK53_RS15165at 3311.904 kb on + strand, within LRK53_RS15165at 3311.904 kb on + strand, within LRK53_RS15165at 3311.904 kb on + strand, within LRK53_RS15165at 3311.905 kb on - strand, within LRK53_RS15165at 3311.905 kb on - strand, within LRK53_RS15165at 3312.035 kb on + strand, within LRK53_RS15165at 3312.035 kb on + strand, within LRK53_RS15165at 3312.035 kb on + strand, within LRK53_RS15165at 3312.036 kb on - strand, within LRK53_RS15165at 3312.036 kb on - strand, within LRK53_RS15165at 3312.074 kb on + strand, within LRK53_RS15165at 3312.075 kb on - strand, within LRK53_RS15165at 3312.075 kb on - strand, within LRK53_RS15165at 3312.075 kb on - strand, within LRK53_RS15165at 3312.075 kb on - strand, within LRK53_RS15165at 3312.077 kb on - strand, within LRK53_RS15165at 3312.418 kb on + strandat 3312.418 kb on + strandat 3312.496 kb on + strand, within LRK53_RS15170at 3312.496 kb on + strand, within LRK53_RS15170at 3312.556 kb on + strand, within LRK53_RS15170at 3312.557 kb on - strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.562 kb on + strand, within LRK53_RS15170at 3312.563 kb on - strand, within LRK53_RS15170at 3312.563 kb on - strand, within LRK53_RS15170at 3312.563 kb on - strand, within LRK53_RS15170at 3312.563 kb on - strand, within LRK53_RS15170at 3312.598 kb on + strand, within LRK53_RS15170at 3312.820 kb on - strandat 3312.898 kb on + strand, within LRK53_RS15175at 3312.899 kb on - strand, within LRK53_RS15175at 3312.918 kb on + strand, within LRK53_RS15175at 3312.919 kb on - strand, within LRK53_RS15175at 3312.919 kb on - strand, within LRK53_RS15175at 3312.919 kb on - strand, within LRK53_RS15175at 3313.006 kb on - strand, within LRK53_RS15175at 3313.138 kb on - strand, within LRK53_RS15175at 3313.138 kb on - strand, within LRK53_RS15175at 3313.489 kb on + strandat 3313.489 kb on + strandat 3313.489 kb on + strandat 3313.489 kb on + strandat 3313.489 kb on + strandat 3313.489 kb on + strandat 3313.490 kb on - strandat 3313.490 kb on - strandat 3313.490 kb on - strandat 3313.947 kb on + strand, within LRK53_RS15180

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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3,311,862 + LRK53_RS15165 0.17 -2.2
3,311,862 + LRK53_RS15165 0.17 -0.1
3,311,862 + LRK53_RS15165 0.17 -1.5
3,311,863 - LRK53_RS15165 0.17 +1.3
3,311,863 - LRK53_RS15165 0.17 +0.8
3,311,863 - LRK53_RS15165 0.17 -2.0
3,311,863 - LRK53_RS15165 0.17 -0.6
3,311,863 - LRK53_RS15165 0.17 +1.7
3,311,904 + LRK53_RS15165 0.24 +1.5
3,311,904 + LRK53_RS15165 0.24 -0.2
3,311,904 + LRK53_RS15165 0.24 -0.7
3,311,905 - LRK53_RS15165 0.24 +0.1
3,311,905 - LRK53_RS15165 0.24 -0.7
3,312,035 + LRK53_RS15165 0.44 -1.6
3,312,035 + LRK53_RS15165 0.44 +2.9
3,312,035 + LRK53_RS15165 0.44 +1.3
3,312,036 - LRK53_RS15165 0.44 +2.3
3,312,036 - LRK53_RS15165 0.44 +0.2
3,312,074 + LRK53_RS15165 0.50 +1.3
3,312,075 - LRK53_RS15165 0.50 -1.7
3,312,075 - LRK53_RS15165 0.50 -1.7
3,312,075 - LRK53_RS15165 0.50 +1.0
3,312,075 - LRK53_RS15165 0.50 +0.3
3,312,077 - LRK53_RS15165 0.51 +1.3
3,312,418 + +0.7
3,312,418 + -0.3
3,312,496 + LRK53_RS15170 0.17 -0.7
3,312,496 + LRK53_RS15170 0.17 -1.4
3,312,556 + LRK53_RS15170 0.31 -1.6
3,312,557 - LRK53_RS15170 0.31 -1.3
3,312,562 + LRK53_RS15170 0.32 -0.3
3,312,562 + LRK53_RS15170 0.32 -1.5
3,312,562 + LRK53_RS15170 0.32 -0.5
3,312,562 + LRK53_RS15170 0.32 +0.3
3,312,562 + LRK53_RS15170 0.32 -0.9
3,312,562 + LRK53_RS15170 0.32 -1.0
3,312,562 + LRK53_RS15170 0.32 +0.1
3,312,563 - LRK53_RS15170 0.33 +0.9
3,312,563 - LRK53_RS15170 0.33 -0.5
3,312,563 - LRK53_RS15170 0.33 +1.9
3,312,563 - LRK53_RS15170 0.33 +1.9
3,312,598 + LRK53_RS15170 0.41 +0.1
3,312,820 - -1.3
3,312,898 + LRK53_RS15175 0.13 -1.3
3,312,899 - LRK53_RS15175 0.13 -0.7
3,312,918 + LRK53_RS15175 0.18 -1.0
3,312,919 - LRK53_RS15175 0.18 +0.3
3,312,919 - LRK53_RS15175 0.18 -0.3
3,312,919 - LRK53_RS15175 0.18 -0.6
3,313,006 - LRK53_RS15175 0.40 -0.6
3,313,138 - LRK53_RS15175 0.72 -0.7
3,313,138 - LRK53_RS15175 0.72 -1.3
3,313,489 + +0.7
3,313,489 + -0.4
3,313,489 + +1.0
3,313,489 + -0.6
3,313,489 + -0.7
3,313,489 + +0.1
3,313,490 - -0.6
3,313,490 - -0.3
3,313,490 - +0.5
3,313,947 + LRK53_RS15180 0.56 +0.0

Or see this region's nucleotide sequence