Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15165 and LRK53_RS15170 are separated by 34 nucleotides LRK53_RS15170 and LRK53_RS15175 overlap by 1 nucleotides LRK53_RS15175 and LRK53_RS15180 are separated by 169 nucleotides
LRK53_RS15165: LRK53_RS15165 - flagellar hook capping protein, at 3,311,753 to 3,312,391
_RS15165
LRK53_RS15170: LRK53_RS15170 - flagellar basal body rod protein FlgC, at 3,312,426 to 3,312,845
_RS15170
LRK53_RS15175: LRK53_RS15175 - flagellar basal body rod protein FlgB, at 3,312,845 to 3,313,249
_RS15175
LRK53_RS15180: LRK53_RS15180 - chemotaxis protein, at 3,313,419 to 3,314,357
_RS15180
Position (kb)
3312
3313
3314 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3311.862 kb on + strand, within LRK53_RS15165 at 3311.862 kb on + strand, within LRK53_RS15165 at 3311.862 kb on + strand, within LRK53_RS15165 at 3311.863 kb on - strand, within LRK53_RS15165 at 3311.863 kb on - strand, within LRK53_RS15165 at 3311.863 kb on - strand, within LRK53_RS15165 at 3311.863 kb on - strand, within LRK53_RS15165 at 3311.863 kb on - strand, within LRK53_RS15165 at 3311.904 kb on + strand, within LRK53_RS15165 at 3311.904 kb on + strand, within LRK53_RS15165 at 3311.904 kb on + strand, within LRK53_RS15165 at 3311.905 kb on - strand, within LRK53_RS15165 at 3311.905 kb on - strand, within LRK53_RS15165 at 3312.035 kb on + strand, within LRK53_RS15165 at 3312.035 kb on + strand, within LRK53_RS15165 at 3312.035 kb on + strand, within LRK53_RS15165 at 3312.036 kb on - strand, within LRK53_RS15165 at 3312.036 kb on - strand, within LRK53_RS15165 at 3312.074 kb on + strand, within LRK53_RS15165 at 3312.075 kb on - strand, within LRK53_RS15165 at 3312.075 kb on - strand, within LRK53_RS15165 at 3312.075 kb on - strand, within LRK53_RS15165 at 3312.075 kb on - strand, within LRK53_RS15165 at 3312.077 kb on - strand, within LRK53_RS15165 at 3312.418 kb on + strand at 3312.418 kb on + strand at 3312.496 kb on + strand, within LRK53_RS15170 at 3312.496 kb on + strand, within LRK53_RS15170 at 3312.556 kb on + strand, within LRK53_RS15170 at 3312.557 kb on - strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.562 kb on + strand, within LRK53_RS15170 at 3312.563 kb on - strand, within LRK53_RS15170 at 3312.563 kb on - strand, within LRK53_RS15170 at 3312.563 kb on - strand, within LRK53_RS15170 at 3312.563 kb on - strand, within LRK53_RS15170 at 3312.598 kb on + strand, within LRK53_RS15170 at 3312.820 kb on - strand at 3312.898 kb on + strand, within LRK53_RS15175 at 3312.899 kb on - strand, within LRK53_RS15175 at 3312.918 kb on + strand, within LRK53_RS15175 at 3312.919 kb on - strand, within LRK53_RS15175 at 3312.919 kb on - strand, within LRK53_RS15175 at 3312.919 kb on - strand, within LRK53_RS15175 at 3313.006 kb on - strand, within LRK53_RS15175 at 3313.138 kb on - strand, within LRK53_RS15175 at 3313.138 kb on - strand, within LRK53_RS15175 at 3313.489 kb on + strand at 3313.489 kb on + strand at 3313.489 kb on + strand at 3313.489 kb on + strand at 3313.489 kb on + strand at 3313.489 kb on + strand at 3313.490 kb on - strand at 3313.490 kb on - strand at 3313.490 kb on - strand at 3313.947 kb on + strand, within LRK53_RS15180
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 3,311,862 + LRK53_RS15165 0.17 -2.2 3,311,862 + LRK53_RS15165 0.17 -0.1 3,311,862 + LRK53_RS15165 0.17 -1.5 3,311,863 - LRK53_RS15165 0.17 +1.3 3,311,863 - LRK53_RS15165 0.17 +0.8 3,311,863 - LRK53_RS15165 0.17 -2.0 3,311,863 - LRK53_RS15165 0.17 -0.6 3,311,863 - LRK53_RS15165 0.17 +1.7 3,311,904 + LRK53_RS15165 0.24 +1.5 3,311,904 + LRK53_RS15165 0.24 -0.2 3,311,904 + LRK53_RS15165 0.24 -0.7 3,311,905 - LRK53_RS15165 0.24 +0.1 3,311,905 - LRK53_RS15165 0.24 -0.7 3,312,035 + LRK53_RS15165 0.44 -1.6 3,312,035 + LRK53_RS15165 0.44 +2.9 3,312,035 + LRK53_RS15165 0.44 +1.3 3,312,036 - LRK53_RS15165 0.44 +2.3 3,312,036 - LRK53_RS15165 0.44 +0.2 3,312,074 + LRK53_RS15165 0.50 +1.3 3,312,075 - LRK53_RS15165 0.50 -1.7 3,312,075 - LRK53_RS15165 0.50 -1.7 3,312,075 - LRK53_RS15165 0.50 +1.0 3,312,075 - LRK53_RS15165 0.50 +0.3 3,312,077 - LRK53_RS15165 0.51 +1.3 3,312,418 + +0.7 3,312,418 + -0.3 3,312,496 + LRK53_RS15170 0.17 -0.7 3,312,496 + LRK53_RS15170 0.17 -1.4 3,312,556 + LRK53_RS15170 0.31 -1.6 3,312,557 - LRK53_RS15170 0.31 -1.3 3,312,562 + LRK53_RS15170 0.32 -0.3 3,312,562 + LRK53_RS15170 0.32 -1.5 3,312,562 + LRK53_RS15170 0.32 -0.5 3,312,562 + LRK53_RS15170 0.32 +0.3 3,312,562 + LRK53_RS15170 0.32 -0.9 3,312,562 + LRK53_RS15170 0.32 -1.0 3,312,562 + LRK53_RS15170 0.32 +0.1 3,312,563 - LRK53_RS15170 0.33 +0.9 3,312,563 - LRK53_RS15170 0.33 -0.5 3,312,563 - LRK53_RS15170 0.33 +1.9 3,312,563 - LRK53_RS15170 0.33 +1.9 3,312,598 + LRK53_RS15170 0.41 +0.1 3,312,820 - -1.3 3,312,898 + LRK53_RS15175 0.13 -1.3 3,312,899 - LRK53_RS15175 0.13 -0.7 3,312,918 + LRK53_RS15175 0.18 -1.0 3,312,919 - LRK53_RS15175 0.18 +0.3 3,312,919 - LRK53_RS15175 0.18 -0.3 3,312,919 - LRK53_RS15175 0.18 -0.6 3,313,006 - LRK53_RS15175 0.40 -0.6 3,313,138 - LRK53_RS15175 0.72 -0.7 3,313,138 - LRK53_RS15175 0.72 -1.3 3,313,489 + +0.7 3,313,489 + -0.4 3,313,489 + +1.0 3,313,489 + -0.6 3,313,489 + -0.7 3,313,489 + +0.1 3,313,490 - -0.6 3,313,490 - -0.3 3,313,490 - +0.5 3,313,947 + LRK53_RS15180 0.56 +0.0
Or see this region's nucleotide sequence