Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15065

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15055 and LRK53_RS15060 are separated by 91 nucleotidesLRK53_RS15060 and LRK53_RS15065 overlap by 4 nucleotidesLRK53_RS15065 and LRK53_RS15070 are separated by 202 nucleotidesLRK53_RS15070 and LRK53_RS15075 overlap by 1 nucleotides LRK53_RS15055: LRK53_RS15055 - flagellar hook-length control protein FliK, at 3,289,217 to 3,290,317 _RS15055 LRK53_RS15060: LRK53_RS15060 - flagellar export protein FliJ, at 3,290,409 to 3,290,834 _RS15060 LRK53_RS15065: LRK53_RS15065 - flagellar protein export ATPase FliI, at 3,290,831 to 3,292,138 _RS15065 LRK53_RS15070: LRK53_RS15070 - flagellar assembly protein FliH, at 3,292,341 to 3,292,961 _RS15070 LRK53_RS15075: LRK53_RS15075 - flagellar motor switch protein FliG, at 3,292,961 to 3,293,977 _RS15075 Position (kb) 3290 3291 3292 3293Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3290.055 kb on - strand, within LRK53_RS15055at 3290.426 kb on - strandat 3290.686 kb on + strand, within LRK53_RS15060at 3290.687 kb on - strand, within LRK53_RS15060at 3290.979 kb on + strand, within LRK53_RS15065at 3291.024 kb on + strand, within LRK53_RS15065at 3291.024 kb on + strand, within LRK53_RS15065at 3291.024 kb on + strand, within LRK53_RS15065at 3291.024 kb on + strand, within LRK53_RS15065at 3291.025 kb on - strand, within LRK53_RS15065at 3291.025 kb on - strand, within LRK53_RS15065at 3291.207 kb on + strand, within LRK53_RS15065at 3291.234 kb on + strand, within LRK53_RS15065at 3291.234 kb on + strand, within LRK53_RS15065at 3291.235 kb on - strand, within LRK53_RS15065at 3291.456 kb on + strand, within LRK53_RS15065at 3291.456 kb on + strand, within LRK53_RS15065at 3291.457 kb on - strand, within LRK53_RS15065at 3291.618 kb on + strand, within LRK53_RS15065at 3291.618 kb on + strand, within LRK53_RS15065at 3291.619 kb on - strand, within LRK53_RS15065at 3291.900 kb on + strand, within LRK53_RS15065at 3292.193 kb on - strandat 3292.219 kb on + strandat 3292.321 kb on + strandat 3292.321 kb on + strandat 3292.322 kb on - strandat 3292.726 kb on + strand, within LRK53_RS15070at 3292.727 kb on - strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.804 kb on + strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.805 kb on - strand, within LRK53_RS15070at 3292.849 kb on - strand, within LRK53_RS15070

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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3,290,055 - LRK53_RS15055 0.76 -0.8
3,290,426 - -0.0
3,290,686 + LRK53_RS15060 0.65 -0.3
3,290,687 - LRK53_RS15060 0.65 -0.5
3,290,979 + LRK53_RS15065 0.11 -0.9
3,291,024 + LRK53_RS15065 0.15 -1.1
3,291,024 + LRK53_RS15065 0.15 +0.9
3,291,024 + LRK53_RS15065 0.15 -3.2
3,291,024 + LRK53_RS15065 0.15 -0.9
3,291,025 - LRK53_RS15065 0.15 -1.6
3,291,025 - LRK53_RS15065 0.15 +0.3
3,291,207 + LRK53_RS15065 0.29 -0.5
3,291,234 + LRK53_RS15065 0.31 -0.6
3,291,234 + LRK53_RS15065 0.31 +0.1
3,291,235 - LRK53_RS15065 0.31 -0.5
3,291,456 + LRK53_RS15065 0.48 -1.4
3,291,456 + LRK53_RS15065 0.48 +2.7
3,291,457 - LRK53_RS15065 0.48 -0.7
3,291,618 + LRK53_RS15065 0.60 -1.4
3,291,618 + LRK53_RS15065 0.60 +0.3
3,291,619 - LRK53_RS15065 0.60 -0.5
3,291,900 + LRK53_RS15065 0.82 -2.2
3,292,193 - -0.5
3,292,219 + -0.5
3,292,321 + -0.0
3,292,321 + -1.7
3,292,322 - +1.1
3,292,726 + LRK53_RS15070 0.62 +0.1
3,292,727 - LRK53_RS15070 0.62 +2.1
3,292,804 + LRK53_RS15070 0.75 -1.2
3,292,804 + LRK53_RS15070 0.75 +0.3
3,292,804 + LRK53_RS15070 0.75 +0.5
3,292,804 + LRK53_RS15070 0.75 -1.5
3,292,804 + LRK53_RS15070 0.75 +1.8
3,292,804 + LRK53_RS15070 0.75 -0.2
3,292,804 + LRK53_RS15070 0.75 -2.4
3,292,804 + LRK53_RS15070 0.75 +1.5
3,292,804 + LRK53_RS15070 0.75 -1.2
3,292,804 + LRK53_RS15070 0.75 -2.4
3,292,804 + LRK53_RS15070 0.75 +1.9
3,292,804 + LRK53_RS15070 0.75 +0.1
3,292,804 + LRK53_RS15070 0.75 -0.5
3,292,804 + LRK53_RS15070 0.75 +0.6
3,292,804 + LRK53_RS15070 0.75 -0.1
3,292,804 + LRK53_RS15070 0.75 -2.2
3,292,804 + LRK53_RS15070 0.75 -0.2
3,292,804 + LRK53_RS15070 0.75 +0.3
3,292,804 + LRK53_RS15070 0.75 -1.6
3,292,804 + LRK53_RS15070 0.75 +1.6
3,292,804 + LRK53_RS15070 0.75 -0.2
3,292,804 + LRK53_RS15070 0.75 -1.2
3,292,804 + LRK53_RS15070 0.75 -0.6
3,292,804 + LRK53_RS15070 0.75 -0.3
3,292,804 + LRK53_RS15070 0.75 +2.1
3,292,804 + LRK53_RS15070 0.75 -1.5
3,292,804 + LRK53_RS15070 0.75 -1.9
3,292,804 + LRK53_RS15070 0.75 +1.1
3,292,804 + LRK53_RS15070 0.75 +0.3
3,292,804 + LRK53_RS15070 0.75 +1.1
3,292,804 + LRK53_RS15070 0.75 +1.1
3,292,804 + LRK53_RS15070 0.75 -1.2
3,292,804 + LRK53_RS15070 0.75 -0.6
3,292,805 - LRK53_RS15070 0.75 +0.1
3,292,805 - LRK53_RS15070 0.75 +1.1
3,292,805 - LRK53_RS15070 0.75 -1.5
3,292,805 - LRK53_RS15070 0.75 -1.2
3,292,805 - LRK53_RS15070 0.75 -0.2
3,292,805 - LRK53_RS15070 0.75 -0.8
3,292,805 - LRK53_RS15070 0.75 -1.9
3,292,805 - LRK53_RS15070 0.75 +1.3
3,292,805 - LRK53_RS15070 0.75 +1.5
3,292,805 - LRK53_RS15070 0.75 -0.4
3,292,805 - LRK53_RS15070 0.75 -1.1
3,292,805 - LRK53_RS15070 0.75 -0.1
3,292,805 - LRK53_RS15070 0.75 +0.1
3,292,805 - LRK53_RS15070 0.75 -1.7
3,292,849 - LRK53_RS15070 0.82 -0.4

Or see this region's nucleotide sequence