Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14990

Experiment: NLDM_defined low phosphorus; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS14980 and LRK53_RS14985 are separated by 11 nucleotidesLRK53_RS14985 and LRK53_RS14990 overlap by 4 nucleotidesLRK53_RS14990 and LRK53_RS14995 are separated by 326 nucleotides LRK53_RS14980: LRK53_RS14980 - chemotaxis protein CheA, at 3,274,328 to 3,276,232 _RS14980 LRK53_RS14985: LRK53_RS14985 - protein phosphatase CheZ, at 3,276,244 to 3,276,885 _RS14985 LRK53_RS14990: LRK53_RS14990 - chemotaxis response regulator CheY, at 3,276,882 to 3,277,289 _RS14990 LRK53_RS14995: LRK53_RS14995 - RNA polymerase sigma factor FliA, at 3,277,616 to 3,278,344 _RS14995 Position (kb) 3276 3277 3278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3276.970 kb on + strand, within LRK53_RS14990at 3276.970 kb on + strand, within LRK53_RS14990at 3276.970 kb on + strand, within LRK53_RS14990at 3276.970 kb on + strand, within LRK53_RS14990at 3276.970 kb on + strand, within LRK53_RS14990at 3276.971 kb on - strand, within LRK53_RS14990at 3277.347 kb on + strandat 3277.347 kb on + strandat 3277.347 kb on + strandat 3277.347 kb on + strandat 3277.347 kb on + strandat 3277.347 kb on + strandat 3277.347 kb on + strandat 3277.347 kb on + strandat 3277.347 kb on + strandat 3277.348 kb on - strandat 3277.348 kb on - strandat 3277.348 kb on - strandat 3277.348 kb on - strandat 3277.348 kb on - strandat 3277.348 kb on - strandat 3277.348 kb on - strandat 3277.359 kb on + strandat 3277.359 kb on + strandat 3277.359 kb on + strandat 3277.558 kb on + strandat 3277.559 kb on - strandat 3277.559 kb on - strandat 3277.559 kb on - strandat 3277.559 kb on - strandat 3277.592 kb on + strandat 3277.592 kb on + strandat 3277.593 kb on - strandat 3277.605 kb on + strandat 3277.605 kb on + strandat 3277.605 kb on + strandat 3277.605 kb on + strandat 3277.606 kb on - strandat 3277.606 kb on - strandat 3277.740 kb on + strand, within LRK53_RS14995at 3277.740 kb on + strand, within LRK53_RS14995at 3277.740 kb on + strand, within LRK53_RS14995at 3277.740 kb on + strand, within LRK53_RS14995at 3277.740 kb on + strand, within LRK53_RS14995at 3277.740 kb on + strand, within LRK53_RS14995at 3277.740 kb on + strand, within LRK53_RS14995at 3277.741 kb on - strand, within LRK53_RS14995at 3277.741 kb on - strand, within LRK53_RS14995at 3277.741 kb on - strand, within LRK53_RS14995at 3277.741 kb on - strand, within LRK53_RS14995at 3277.741 kb on - strand, within LRK53_RS14995at 3277.741 kb on - strand, within LRK53_RS14995at 3277.741 kb on - strand, within LRK53_RS14995at 3277.741 kb on - strand, within LRK53_RS14995at 3277.743 kb on + strand, within LRK53_RS14995at 3277.743 kb on + strand, within LRK53_RS14995at 3277.744 kb on - strand, within LRK53_RS14995at 3277.744 kb on - strand, within LRK53_RS14995at 3277.744 kb on - strand, within LRK53_RS14995at 3277.744 kb on - strand, within LRK53_RS14995at 3277.937 kb on + strand, within LRK53_RS14995at 3277.937 kb on + strand, within LRK53_RS14995at 3277.938 kb on - strand, within LRK53_RS14995at 3277.947 kb on + strand, within LRK53_RS14995at 3277.947 kb on + strand, within LRK53_RS14995at 3277.947 kb on + strand, within LRK53_RS14995at 3277.947 kb on + strand, within LRK53_RS14995at 3277.947 kb on + strand, within LRK53_RS14995at 3277.947 kb on + strand, within LRK53_RS14995at 3277.947 kb on + strand, within LRK53_RS14995at 3277.948 kb on - strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.130 kb on + strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.131 kb on - strand, within LRK53_RS14995at 3278.254 kb on - strand, within LRK53_RS14995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
remove
3,276,970 + LRK53_RS14990 0.22 -0.2
3,276,970 + LRK53_RS14990 0.22 -0.5
3,276,970 + LRK53_RS14990 0.22 -1.1
3,276,970 + LRK53_RS14990 0.22 -1.3
3,276,970 + LRK53_RS14990 0.22 -0.5
3,276,971 - LRK53_RS14990 0.22 -2.2
3,277,347 + +0.5
3,277,347 + -0.3
3,277,347 + -1.9
3,277,347 + +0.6
3,277,347 + -2.3
3,277,347 + +0.3
3,277,347 + +0.3
3,277,347 + +0.0
3,277,347 + +0.5
3,277,348 - +0.5
3,277,348 - -0.7
3,277,348 - +0.0
3,277,348 - -1.1
3,277,348 - -1.3
3,277,348 - +2.4
3,277,348 - +2.3
3,277,359 + -1.7
3,277,359 + -0.7
3,277,359 + -0.5
3,277,558 + +1.5
3,277,559 - -1.3
3,277,559 - +0.3
3,277,559 - +1.3
3,277,559 - -0.1
3,277,592 + -0.7
3,277,592 + -1.5
3,277,593 - +0.4
3,277,605 + -0.2
3,277,605 + -0.7
3,277,605 + -0.3
3,277,605 + -0.1
3,277,606 - +1.8
3,277,606 - -1.1
3,277,740 + LRK53_RS14995 0.17 -1.7
3,277,740 + LRK53_RS14995 0.17 -0.9
3,277,740 + LRK53_RS14995 0.17 -1.3
3,277,740 + LRK53_RS14995 0.17 -0.5
3,277,740 + LRK53_RS14995 0.17 -0.1
3,277,740 + LRK53_RS14995 0.17 +1.2
3,277,740 + LRK53_RS14995 0.17 +0.0
3,277,741 - LRK53_RS14995 0.17 +0.2
3,277,741 - LRK53_RS14995 0.17 -2.5
3,277,741 - LRK53_RS14995 0.17 -1.1
3,277,741 - LRK53_RS14995 0.17 -0.3
3,277,741 - LRK53_RS14995 0.17 +0.9
3,277,741 - LRK53_RS14995 0.17 -0.3
3,277,741 - LRK53_RS14995 0.17 +0.7
3,277,741 - LRK53_RS14995 0.17 +1.9
3,277,743 + LRK53_RS14995 0.17 -2.9
3,277,743 + LRK53_RS14995 0.17 +0.3
3,277,744 - LRK53_RS14995 0.18 +1.8
3,277,744 - LRK53_RS14995 0.18 -2.2
3,277,744 - LRK53_RS14995 0.18 +1.8
3,277,744 - LRK53_RS14995 0.18 +0.5
3,277,937 + LRK53_RS14995 0.44 -0.9
3,277,937 + LRK53_RS14995 0.44 +0.7
3,277,938 - LRK53_RS14995 0.44 +1.3
3,277,947 + LRK53_RS14995 0.45 +0.3
3,277,947 + LRK53_RS14995 0.45 +0.3
3,277,947 + LRK53_RS14995 0.45 -0.4
3,277,947 + LRK53_RS14995 0.45 +0.2
3,277,947 + LRK53_RS14995 0.45 -0.7
3,277,947 + LRK53_RS14995 0.45 -0.5
3,277,947 + LRK53_RS14995 0.45 +1.0
3,277,948 - LRK53_RS14995 0.46 -0.4
3,278,130 + LRK53_RS14995 0.71 -0.6
3,278,130 + LRK53_RS14995 0.71 -0.5
3,278,130 + LRK53_RS14995 0.71 -0.7
3,278,130 + LRK53_RS14995 0.71 -0.9
3,278,130 + LRK53_RS14995 0.71 +1.1
3,278,130 + LRK53_RS14995 0.71 -0.6
3,278,130 + LRK53_RS14995 0.71 -0.3
3,278,130 + LRK53_RS14995 0.71 +0.4
3,278,130 + LRK53_RS14995 0.71 -1.2
3,278,130 + LRK53_RS14995 0.71 -1.6
3,278,130 + LRK53_RS14995 0.71 -0.5
3,278,130 + LRK53_RS14995 0.71 -0.7
3,278,130 + LRK53_RS14995 0.71 -0.1
3,278,130 + LRK53_RS14995 0.71 +0.9
3,278,131 - LRK53_RS14995 0.71 -1.1
3,278,131 - LRK53_RS14995 0.71 -1.2
3,278,131 - LRK53_RS14995 0.71 -1.7
3,278,131 - LRK53_RS14995 0.71 +1.7
3,278,131 - LRK53_RS14995 0.71 +1.8
3,278,131 - LRK53_RS14995 0.71 -2.1
3,278,131 - LRK53_RS14995 0.71 -1.0
3,278,131 - LRK53_RS14995 0.71 +0.7
3,278,131 - LRK53_RS14995 0.71 +0.9
3,278,131 - LRK53_RS14995 0.71 -1.5
3,278,131 - LRK53_RS14995 0.71 +0.7
3,278,131 - LRK53_RS14995 0.71 -0.3
3,278,131 - LRK53_RS14995 0.71 +1.2
3,278,131 - LRK53_RS14995 0.71 +0.3
3,278,131 - LRK53_RS14995 0.71 +0.2
3,278,131 - LRK53_RS14995 0.71 +0.2
3,278,131 - LRK53_RS14995 0.71 +0.5
3,278,131 - LRK53_RS14995 0.71 +0.7
3,278,131 - LRK53_RS14995 0.71 +0.6
3,278,131 - LRK53_RS14995 0.71 -0.7
3,278,131 - LRK53_RS14995 0.71 -1.1
3,278,131 - LRK53_RS14995 0.71 +0.3
3,278,131 - LRK53_RS14995 0.71 -1.3
3,278,131 - LRK53_RS14995 0.71 -1.2
3,278,131 - LRK53_RS14995 0.71 +1.3
3,278,131 - LRK53_RS14995 0.71 +0.5
3,278,131 - LRK53_RS14995 0.71 -0.5
3,278,131 - LRK53_RS14995 0.71 -0.7
3,278,131 - LRK53_RS14995 0.71 -1.4
3,278,131 - LRK53_RS14995 0.71 -1.5
3,278,131 - LRK53_RS14995 0.71 +0.9
3,278,131 - LRK53_RS14995 0.71 -1.0
3,278,131 - LRK53_RS14995 0.71 -0.3
3,278,131 - LRK53_RS14995 0.71 +0.2
3,278,131 - LRK53_RS14995 0.71 -1.1
3,278,254 - LRK53_RS14995 0.88 +1.1

Or see this region's nucleotide sequence