Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14980 and LRK53_RS14985 are separated by 11 nucleotides LRK53_RS14985 and LRK53_RS14990 overlap by 4 nucleotides LRK53_RS14990 and LRK53_RS14995 are separated by 326 nucleotides
LRK53_RS14980: LRK53_RS14980 - chemotaxis protein CheA, at 3,274,328 to 3,276,232
_RS14980
LRK53_RS14985: LRK53_RS14985 - protein phosphatase CheZ, at 3,276,244 to 3,276,885
_RS14985
LRK53_RS14990: LRK53_RS14990 - chemotaxis response regulator CheY, at 3,276,882 to 3,277,289
_RS14990
LRK53_RS14995: LRK53_RS14995 - RNA polymerase sigma factor FliA, at 3,277,616 to 3,278,344
_RS14995
Position (kb)
3276
3277
3278 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3276.970 kb on + strand, within LRK53_RS14990 at 3276.970 kb on + strand, within LRK53_RS14990 at 3276.970 kb on + strand, within LRK53_RS14990 at 3276.970 kb on + strand, within LRK53_RS14990 at 3276.970 kb on + strand, within LRK53_RS14990 at 3276.971 kb on - strand, within LRK53_RS14990 at 3277.347 kb on + strand at 3277.347 kb on + strand at 3277.347 kb on + strand at 3277.347 kb on + strand at 3277.347 kb on + strand at 3277.347 kb on + strand at 3277.347 kb on + strand at 3277.347 kb on + strand at 3277.347 kb on + strand at 3277.348 kb on - strand at 3277.348 kb on - strand at 3277.348 kb on - strand at 3277.348 kb on - strand at 3277.348 kb on - strand at 3277.348 kb on - strand at 3277.348 kb on - strand at 3277.359 kb on + strand at 3277.359 kb on + strand at 3277.359 kb on + strand at 3277.558 kb on + strand at 3277.559 kb on - strand at 3277.559 kb on - strand at 3277.559 kb on - strand at 3277.559 kb on - strand at 3277.592 kb on + strand at 3277.592 kb on + strand at 3277.593 kb on - strand at 3277.605 kb on + strand at 3277.605 kb on + strand at 3277.605 kb on + strand at 3277.605 kb on + strand at 3277.606 kb on - strand at 3277.606 kb on - strand at 3277.740 kb on + strand, within LRK53_RS14995 at 3277.740 kb on + strand, within LRK53_RS14995 at 3277.740 kb on + strand, within LRK53_RS14995 at 3277.740 kb on + strand, within LRK53_RS14995 at 3277.740 kb on + strand, within LRK53_RS14995 at 3277.740 kb on + strand, within LRK53_RS14995 at 3277.740 kb on + strand, within LRK53_RS14995 at 3277.741 kb on - strand, within LRK53_RS14995 at 3277.741 kb on - strand, within LRK53_RS14995 at 3277.741 kb on - strand, within LRK53_RS14995 at 3277.741 kb on - strand, within LRK53_RS14995 at 3277.741 kb on - strand, within LRK53_RS14995 at 3277.741 kb on - strand, within LRK53_RS14995 at 3277.741 kb on - strand, within LRK53_RS14995 at 3277.741 kb on - strand, within LRK53_RS14995 at 3277.743 kb on + strand, within LRK53_RS14995 at 3277.743 kb on + strand, within LRK53_RS14995 at 3277.744 kb on - strand, within LRK53_RS14995 at 3277.744 kb on - strand, within LRK53_RS14995 at 3277.744 kb on - strand, within LRK53_RS14995 at 3277.744 kb on - strand, within LRK53_RS14995 at 3277.937 kb on + strand, within LRK53_RS14995 at 3277.937 kb on + strand, within LRK53_RS14995 at 3277.938 kb on - strand, within LRK53_RS14995 at 3277.947 kb on + strand, within LRK53_RS14995 at 3277.947 kb on + strand, within LRK53_RS14995 at 3277.947 kb on + strand, within LRK53_RS14995 at 3277.947 kb on + strand, within LRK53_RS14995 at 3277.947 kb on + strand, within LRK53_RS14995 at 3277.947 kb on + strand, within LRK53_RS14995 at 3277.947 kb on + strand, within LRK53_RS14995 at 3277.948 kb on - strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.130 kb on + strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.131 kb on - strand, within LRK53_RS14995 at 3278.254 kb on - strand, within LRK53_RS14995
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 3,276,970 + LRK53_RS14990 0.22 -0.2 3,276,970 + LRK53_RS14990 0.22 -0.5 3,276,970 + LRK53_RS14990 0.22 -1.1 3,276,970 + LRK53_RS14990 0.22 -1.3 3,276,970 + LRK53_RS14990 0.22 -0.5 3,276,971 - LRK53_RS14990 0.22 -2.2 3,277,347 + +0.5 3,277,347 + -0.3 3,277,347 + -1.9 3,277,347 + +0.6 3,277,347 + -2.3 3,277,347 + +0.3 3,277,347 + +0.3 3,277,347 + +0.0 3,277,347 + +0.5 3,277,348 - +0.5 3,277,348 - -0.7 3,277,348 - +0.0 3,277,348 - -1.1 3,277,348 - -1.3 3,277,348 - +2.4 3,277,348 - +2.3 3,277,359 + -1.7 3,277,359 + -0.7 3,277,359 + -0.5 3,277,558 + +1.5 3,277,559 - -1.3 3,277,559 - +0.3 3,277,559 - +1.3 3,277,559 - -0.1 3,277,592 + -0.7 3,277,592 + -1.5 3,277,593 - +0.4 3,277,605 + -0.2 3,277,605 + -0.7 3,277,605 + -0.3 3,277,605 + -0.1 3,277,606 - +1.8 3,277,606 - -1.1 3,277,740 + LRK53_RS14995 0.17 -1.7 3,277,740 + LRK53_RS14995 0.17 -0.9 3,277,740 + LRK53_RS14995 0.17 -1.3 3,277,740 + LRK53_RS14995 0.17 -0.5 3,277,740 + LRK53_RS14995 0.17 -0.1 3,277,740 + LRK53_RS14995 0.17 +1.2 3,277,740 + LRK53_RS14995 0.17 +0.0 3,277,741 - LRK53_RS14995 0.17 +0.2 3,277,741 - LRK53_RS14995 0.17 -2.5 3,277,741 - LRK53_RS14995 0.17 -1.1 3,277,741 - LRK53_RS14995 0.17 -0.3 3,277,741 - LRK53_RS14995 0.17 +0.9 3,277,741 - LRK53_RS14995 0.17 -0.3 3,277,741 - LRK53_RS14995 0.17 +0.7 3,277,741 - LRK53_RS14995 0.17 +1.9 3,277,743 + LRK53_RS14995 0.17 -2.9 3,277,743 + LRK53_RS14995 0.17 +0.3 3,277,744 - LRK53_RS14995 0.18 +1.8 3,277,744 - LRK53_RS14995 0.18 -2.2 3,277,744 - LRK53_RS14995 0.18 +1.8 3,277,744 - LRK53_RS14995 0.18 +0.5 3,277,937 + LRK53_RS14995 0.44 -0.9 3,277,937 + LRK53_RS14995 0.44 +0.7 3,277,938 - LRK53_RS14995 0.44 +1.3 3,277,947 + LRK53_RS14995 0.45 +0.3 3,277,947 + LRK53_RS14995 0.45 +0.3 3,277,947 + LRK53_RS14995 0.45 -0.4 3,277,947 + LRK53_RS14995 0.45 +0.2 3,277,947 + LRK53_RS14995 0.45 -0.7 3,277,947 + LRK53_RS14995 0.45 -0.5 3,277,947 + LRK53_RS14995 0.45 +1.0 3,277,948 - LRK53_RS14995 0.46 -0.4 3,278,130 + LRK53_RS14995 0.71 -0.6 3,278,130 + LRK53_RS14995 0.71 -0.5 3,278,130 + LRK53_RS14995 0.71 -0.7 3,278,130 + LRK53_RS14995 0.71 -0.9 3,278,130 + LRK53_RS14995 0.71 +1.1 3,278,130 + LRK53_RS14995 0.71 -0.6 3,278,130 + LRK53_RS14995 0.71 -0.3 3,278,130 + LRK53_RS14995 0.71 +0.4 3,278,130 + LRK53_RS14995 0.71 -1.2 3,278,130 + LRK53_RS14995 0.71 -1.6 3,278,130 + LRK53_RS14995 0.71 -0.5 3,278,130 + LRK53_RS14995 0.71 -0.7 3,278,130 + LRK53_RS14995 0.71 -0.1 3,278,130 + LRK53_RS14995 0.71 +0.9 3,278,131 - LRK53_RS14995 0.71 -1.1 3,278,131 - LRK53_RS14995 0.71 -1.2 3,278,131 - LRK53_RS14995 0.71 -1.7 3,278,131 - LRK53_RS14995 0.71 +1.7 3,278,131 - LRK53_RS14995 0.71 +1.8 3,278,131 - LRK53_RS14995 0.71 -2.1 3,278,131 - LRK53_RS14995 0.71 -1.0 3,278,131 - LRK53_RS14995 0.71 +0.7 3,278,131 - LRK53_RS14995 0.71 +0.9 3,278,131 - LRK53_RS14995 0.71 -1.5 3,278,131 - LRK53_RS14995 0.71 +0.7 3,278,131 - LRK53_RS14995 0.71 -0.3 3,278,131 - LRK53_RS14995 0.71 +1.2 3,278,131 - LRK53_RS14995 0.71 +0.3 3,278,131 - LRK53_RS14995 0.71 +0.2 3,278,131 - LRK53_RS14995 0.71 +0.2 3,278,131 - LRK53_RS14995 0.71 +0.5 3,278,131 - LRK53_RS14995 0.71 +0.7 3,278,131 - LRK53_RS14995 0.71 +0.6 3,278,131 - LRK53_RS14995 0.71 -0.7 3,278,131 - LRK53_RS14995 0.71 -1.1 3,278,131 - LRK53_RS14995 0.71 +0.3 3,278,131 - LRK53_RS14995 0.71 -1.3 3,278,131 - LRK53_RS14995 0.71 -1.2 3,278,131 - LRK53_RS14995 0.71 +1.3 3,278,131 - LRK53_RS14995 0.71 +0.5 3,278,131 - LRK53_RS14995 0.71 -0.5 3,278,131 - LRK53_RS14995 0.71 -0.7 3,278,131 - LRK53_RS14995 0.71 -1.4 3,278,131 - LRK53_RS14995 0.71 -1.5 3,278,131 - LRK53_RS14995 0.71 +0.9 3,278,131 - LRK53_RS14995 0.71 -1.0 3,278,131 - LRK53_RS14995 0.71 -0.3 3,278,131 - LRK53_RS14995 0.71 +0.2 3,278,131 - LRK53_RS14995 0.71 -1.1 3,278,254 - LRK53_RS14995 0.88 +1.1
Or see this region's nucleotide sequence