Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14905

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14900 and LRK53_RS14905 are separated by 17 nucleotidesLRK53_RS14905 and LRK53_RS14910 are separated by 77 nucleotidesLRK53_RS14910 and LRK53_RS14915 overlap by 4 nucleotides LRK53_RS14900: LRK53_RS14900 - methyl-accepting chemotaxis protein, at 3,258,737 to 3,259,915 _RS14900 LRK53_RS14905: LRK53_RS14905 - chemotaxis response regulator protein-glutamate methylesterase, at 3,259,933 to 3,261,024 _RS14905 LRK53_RS14910: LRK53_RS14910 - chemoreceptor glutamine deamidase CheD, at 3,261,102 to 3,261,752 _RS14910 LRK53_RS14915: LRK53_RS14915 - protein-glutamate O-methyltransferase, at 3,261,749 to 3,262,633 _RS14915 Position (kb) 3259 3260 3261 3262Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3259.357 kb on + strand, within LRK53_RS14900at 3259.357 kb on + strand, within LRK53_RS14900at 3259.357 kb on + strand, within LRK53_RS14900at 3259.358 kb on - strand, within LRK53_RS14900at 3259.358 kb on - strand, within LRK53_RS14900at 3259.358 kb on - strand, within LRK53_RS14900at 3259.358 kb on - strand, within LRK53_RS14900at 3259.358 kb on - strand, within LRK53_RS14900at 3259.358 kb on - strand, within LRK53_RS14900at 3259.923 kb on + strandat 3260.261 kb on + strand, within LRK53_RS14905at 3260.261 kb on + strand, within LRK53_RS14905at 3260.261 kb on + strand, within LRK53_RS14905at 3260.261 kb on + strand, within LRK53_RS14905at 3260.261 kb on + strand, within LRK53_RS14905at 3260.261 kb on + strand, within LRK53_RS14905at 3260.261 kb on + strand, within LRK53_RS14905at 3260.261 kb on + strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.262 kb on - strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.312 kb on + strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.313 kb on - strand, within LRK53_RS14905at 3260.416 kb on + strand, within LRK53_RS14905at 3260.416 kb on + strand, within LRK53_RS14905at 3260.416 kb on + strand, within LRK53_RS14905at 3260.416 kb on + strand, within LRK53_RS14905at 3260.416 kb on + strand, within LRK53_RS14905at 3260.416 kb on + strand, within LRK53_RS14905at 3260.416 kb on + strand, within LRK53_RS14905at 3260.417 kb on - strand, within LRK53_RS14905at 3260.417 kb on - strand, within LRK53_RS14905at 3260.417 kb on - strand, within LRK53_RS14905at 3260.417 kb on - strand, within LRK53_RS14905at 3261.001 kb on + strandat 3261.018 kb on + strandat 3261.018 kb on + strandat 3261.018 kb on + strandat 3261.018 kb on + strandat 3261.018 kb on + strandat 3261.018 kb on + strandat 3261.019 kb on - strandat 3261.019 kb on - strandat 3261.019 kb on - strandat 3261.019 kb on - strandat 3261.019 kb on - strandat 3261.154 kb on + strandat 3261.305 kb on - strand, within LRK53_RS14910at 3261.454 kb on + strand, within LRK53_RS14910at 3261.619 kb on + strand, within LRK53_RS14910at 3261.619 kb on + strand, within LRK53_RS14910at 3261.619 kb on + strand, within LRK53_RS14910at 3261.619 kb on + strand, within LRK53_RS14910at 3261.619 kb on + strand, within LRK53_RS14910at 3261.619 kb on + strand, within LRK53_RS14910at 3261.619 kb on + strand, within LRK53_RS14910at 3261.620 kb on - strand, within LRK53_RS14910at 3261.620 kb on - strand, within LRK53_RS14910at 3261.838 kb on - strand, within LRK53_RS14915at 3261.865 kb on - strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.903 kb on + strand, within LRK53_RS14915at 3261.904 kb on - strand, within LRK53_RS14915at 3261.904 kb on - strand, within LRK53_RS14915at 3261.904 kb on - strand, within LRK53_RS14915at 3261.904 kb on - strand, within LRK53_RS14915at 3261.904 kb on - strand, within LRK53_RS14915at 3261.904 kb on - strand, within LRK53_RS14915at 3261.904 kb on - strand, within LRK53_RS14915

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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3,259,357 + LRK53_RS14900 0.53 -0.2
3,259,357 + LRK53_RS14900 0.53 -0.1
3,259,357 + LRK53_RS14900 0.53 -0.4
3,259,358 - LRK53_RS14900 0.53 -0.1
3,259,358 - LRK53_RS14900 0.53 +0.5
3,259,358 - LRK53_RS14900 0.53 -0.3
3,259,358 - LRK53_RS14900 0.53 -1.0
3,259,358 - LRK53_RS14900 0.53 +0.4
3,259,358 - LRK53_RS14900 0.53 -0.1
3,259,923 + +0.3
3,260,261 + LRK53_RS14905 0.30 -0.9
3,260,261 + LRK53_RS14905 0.30 +0.2
3,260,261 + LRK53_RS14905 0.30 -0.9
3,260,261 + LRK53_RS14905 0.30 -0.2
3,260,261 + LRK53_RS14905 0.30 +2.4
3,260,261 + LRK53_RS14905 0.30 +1.1
3,260,261 + LRK53_RS14905 0.30 -0.6
3,260,261 + LRK53_RS14905 0.30 -0.2
3,260,262 - LRK53_RS14905 0.30 -1.7
3,260,262 - LRK53_RS14905 0.30 +1.7
3,260,262 - LRK53_RS14905 0.30 -0.1
3,260,262 - LRK53_RS14905 0.30 -3.2
3,260,262 - LRK53_RS14905 0.30 +0.2
3,260,262 - LRK53_RS14905 0.30 -0.9
3,260,262 - LRK53_RS14905 0.30 -2.4
3,260,262 - LRK53_RS14905 0.30 -1.5
3,260,262 - LRK53_RS14905 0.30 +0.1
3,260,262 - LRK53_RS14905 0.30 -2.1
3,260,312 + LRK53_RS14905 0.35 +0.8
3,260,312 + LRK53_RS14905 0.35 -0.8
3,260,312 + LRK53_RS14905 0.35 -0.9
3,260,312 + LRK53_RS14905 0.35 -0.7
3,260,312 + LRK53_RS14905 0.35 -0.5
3,260,312 + LRK53_RS14905 0.35 +1.4
3,260,312 + LRK53_RS14905 0.35 +0.2
3,260,312 + LRK53_RS14905 0.35 -0.5
3,260,312 + LRK53_RS14905 0.35 -0.5
3,260,312 + LRK53_RS14905 0.35 -0.3
3,260,312 + LRK53_RS14905 0.35 -1.3
3,260,312 + LRK53_RS14905 0.35 -1.1
3,260,312 + LRK53_RS14905 0.35 +0.1
3,260,312 + LRK53_RS14905 0.35 -1.3
3,260,312 + LRK53_RS14905 0.35 -1.5
3,260,312 + LRK53_RS14905 0.35 -0.2
3,260,312 + LRK53_RS14905 0.35 +0.9
3,260,312 + LRK53_RS14905 0.35 -2.8
3,260,312 + LRK53_RS14905 0.35 -0.9
3,260,312 + LRK53_RS14905 0.35 -0.1
3,260,313 - LRK53_RS14905 0.35 -0.9
3,260,313 - LRK53_RS14905 0.35 +1.3
3,260,313 - LRK53_RS14905 0.35 -0.7
3,260,313 - LRK53_RS14905 0.35 -2.2
3,260,313 - LRK53_RS14905 0.35 +0.3
3,260,313 - LRK53_RS14905 0.35 -1.6
3,260,313 - LRK53_RS14905 0.35 -0.9
3,260,313 - LRK53_RS14905 0.35 -1.2
3,260,313 - LRK53_RS14905 0.35 -0.7
3,260,313 - LRK53_RS14905 0.35 -0.3
3,260,313 - LRK53_RS14905 0.35 -0.1
3,260,313 - LRK53_RS14905 0.35 -0.1
3,260,313 - LRK53_RS14905 0.35 -1.6
3,260,313 - LRK53_RS14905 0.35 +0.6
3,260,313 - LRK53_RS14905 0.35 +0.5
3,260,416 + LRK53_RS14905 0.44 -0.3
3,260,416 + LRK53_RS14905 0.44 -1.7
3,260,416 + LRK53_RS14905 0.44 +0.3
3,260,416 + LRK53_RS14905 0.44 +0.0
3,260,416 + LRK53_RS14905 0.44 -1.1
3,260,416 + LRK53_RS14905 0.44 -1.2
3,260,416 + LRK53_RS14905 0.44 -0.1
3,260,417 - LRK53_RS14905 0.44 -1.9
3,260,417 - LRK53_RS14905 0.44 -1.7
3,260,417 - LRK53_RS14905 0.44 -0.5
3,260,417 - LRK53_RS14905 0.44 -0.9
3,261,001 + +0.7
3,261,018 + -2.1
3,261,018 + +1.1
3,261,018 + -1.8
3,261,018 + +0.1
3,261,018 + +1.1
3,261,018 + -1.2
3,261,019 - +0.9
3,261,019 - +2.1
3,261,019 - +2.2
3,261,019 - -0.5
3,261,019 - -1.4
3,261,154 + -0.5
3,261,305 - LRK53_RS14910 0.31 -1.1
3,261,454 + LRK53_RS14910 0.54 -1.5
3,261,619 + LRK53_RS14910 0.79 -0.2
3,261,619 + LRK53_RS14910 0.79 +1.1
3,261,619 + LRK53_RS14910 0.79 +2.5
3,261,619 + LRK53_RS14910 0.79 +0.3
3,261,619 + LRK53_RS14910 0.79 -1.9
3,261,619 + LRK53_RS14910 0.79 -0.7
3,261,619 + LRK53_RS14910 0.79 +0.4
3,261,620 - LRK53_RS14910 0.80 +0.3
3,261,620 - LRK53_RS14910 0.80 +0.1
3,261,838 - LRK53_RS14915 0.10 -1.0
3,261,865 - LRK53_RS14915 0.13 +0.5
3,261,903 + LRK53_RS14915 0.17 -0.3
3,261,903 + LRK53_RS14915 0.17 -0.5
3,261,903 + LRK53_RS14915 0.17 +0.1
3,261,903 + LRK53_RS14915 0.17 -0.5
3,261,903 + LRK53_RS14915 0.17 -0.9
3,261,903 + LRK53_RS14915 0.17 -0.2
3,261,903 + LRK53_RS14915 0.17 +1.3
3,261,903 + LRK53_RS14915 0.17 -0.5
3,261,903 + LRK53_RS14915 0.17 -1.7
3,261,903 + LRK53_RS14915 0.17 -1.7
3,261,904 - LRK53_RS14915 0.18 -1.3
3,261,904 - LRK53_RS14915 0.18 -0.9
3,261,904 - LRK53_RS14915 0.18 +0.9
3,261,904 - LRK53_RS14915 0.18 -1.9
3,261,904 - LRK53_RS14915 0.18 -0.7
3,261,904 - LRK53_RS14915 0.18 -0.9
3,261,904 - LRK53_RS14915 0.18 +0.2

Or see this region's nucleotide sequence