Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14785 and LRK53_RS14790 overlap by 4 nucleotides LRK53_RS14790 and LRK53_RS14795 are separated by 58 nucleotides LRK53_RS14795 and LRK53_RS14800 are separated by 123 nucleotides
LRK53_RS14785: LRK53_RS14785 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,237,970 to 3,239,124
_RS14785
LRK53_RS14790: LRK53_RS14790 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 3,239,121 to 3,239,624
_RS14790
LRK53_RS14795: LRK53_RS14795 - hypothetical protein, at 3,239,683 to 3,239,952
_RS14795
LRK53_RS14800: LRK53_RS14800 - DUF1631 domain-containing protein, at 3,240,076 to 3,242,334
_RS14800
Position (kb)
3239
3240 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3238.955 kb on + strand, within LRK53_RS14785 at 3238.956 kb on - strand, within LRK53_RS14785 at 3239.036 kb on - strand at 3239.092 kb on + strand at 3239.092 kb on + strand at 3239.189 kb on + strand, within LRK53_RS14790 at 3239.190 kb on - strand, within LRK53_RS14790 at 3239.464 kb on + strand, within LRK53_RS14790 at 3239.464 kb on + strand, within LRK53_RS14790 at 3239.648 kb on - strand at 3239.648 kb on - strand at 3239.652 kb on + strand at 3239.652 kb on + strand at 3239.652 kb on + strand at 3239.652 kb on + strand at 3239.652 kb on + strand at 3239.652 kb on + strand at 3239.653 kb on - strand at 3239.653 kb on - strand at 3239.653 kb on - strand at 3239.653 kb on - strand at 3239.653 kb on - strand at 3239.653 kb on - strand at 3239.653 kb on - strand at 3239.653 kb on - strand at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.869 kb on + strand, within LRK53_RS14795 at 3239.870 kb on - strand, within LRK53_RS14795 at 3239.870 kb on - strand, within LRK53_RS14795 at 3239.870 kb on - strand, within LRK53_RS14795 at 3239.870 kb on - strand, within LRK53_RS14795 at 3239.870 kb on - strand, within LRK53_RS14795 at 3240.011 kb on + strand at 3240.054 kb on - strand at 3240.283 kb on + strand at 3240.283 kb on + strand at 3240.283 kb on + strand at 3240.284 kb on - strand at 3240.284 kb on - strand at 3240.284 kb on - strand at 3240.661 kb on + strand, within LRK53_RS14800 at 3240.661 kb on + strand, within LRK53_RS14800 at 3240.662 kb on - strand, within LRK53_RS14800 at 3240.662 kb on - strand, within LRK53_RS14800 at 3240.662 kb on - strand, within LRK53_RS14800 at 3240.662 kb on - strand, within LRK53_RS14800 at 3240.662 kb on - strand, within LRK53_RS14800 at 3240.662 kb on - strand, within LRK53_RS14800 at 3240.679 kb on + strand, within LRK53_RS14800 at 3240.706 kb on + strand, within LRK53_RS14800
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 3,238,955 + LRK53_RS14785 0.85 +0.5 3,238,956 - LRK53_RS14785 0.85 -0.9 3,239,036 - -1.5 3,239,092 + -0.3 3,239,092 + -1.9 3,239,189 + LRK53_RS14790 0.13 -1.1 3,239,190 - LRK53_RS14790 0.14 +1.3 3,239,464 + LRK53_RS14790 0.68 -0.6 3,239,464 + LRK53_RS14790 0.68 +1.1 3,239,648 - -0.5 3,239,648 - +0.9 3,239,652 + +1.3 3,239,652 + -1.5 3,239,652 + -2.3 3,239,652 + +0.3 3,239,652 + +2.3 3,239,652 + -0.7 3,239,653 - -0.3 3,239,653 - -0.5 3,239,653 - -1.2 3,239,653 - -3.6 3,239,653 - -0.1 3,239,653 - -0.9 3,239,653 - -0.7 3,239,653 - -0.4 3,239,869 + LRK53_RS14795 0.69 -1.7 3,239,869 + LRK53_RS14795 0.69 -0.6 3,239,869 + LRK53_RS14795 0.69 +0.3 3,239,869 + LRK53_RS14795 0.69 -0.5 3,239,869 + LRK53_RS14795 0.69 -0.5 3,239,869 + LRK53_RS14795 0.69 -0.8 3,239,869 + LRK53_RS14795 0.69 +0.8 3,239,869 + LRK53_RS14795 0.69 -2.4 3,239,869 + LRK53_RS14795 0.69 -0.7 3,239,869 + LRK53_RS14795 0.69 -1.8 3,239,870 - LRK53_RS14795 0.69 -0.3 3,239,870 - LRK53_RS14795 0.69 -0.7 3,239,870 - LRK53_RS14795 0.69 -0.7 3,239,870 - LRK53_RS14795 0.69 +0.0 3,239,870 - LRK53_RS14795 0.69 -1.3 3,240,011 + -0.7 3,240,054 - -2.8 3,240,283 + -2.2 3,240,283 + +0.3 3,240,283 + +1.3 3,240,284 - +0.3 3,240,284 - +0.3 3,240,284 - -1.8 3,240,661 + LRK53_RS14800 0.26 -2.1 3,240,661 + LRK53_RS14800 0.26 -1.1 3,240,662 - LRK53_RS14800 0.26 -2.1 3,240,662 - LRK53_RS14800 0.26 -0.1 3,240,662 - LRK53_RS14800 0.26 +0.9 3,240,662 - LRK53_RS14800 0.26 +0.3 3,240,662 - LRK53_RS14800 0.26 -1.3 3,240,662 - LRK53_RS14800 0.26 +0.8 3,240,679 + LRK53_RS14800 0.27 +0.9 3,240,706 + LRK53_RS14800 0.28 -1.1
Or see this region's nucleotide sequence