Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS12800

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS12795 and LRK53_RS12800 are separated by 122 nucleotidesLRK53_RS12800 and LRK53_RS12805 are separated by 91 nucleotides LRK53_RS12795: LRK53_RS12795 - quinone-dependent dihydroorotate dehydrogenase, at 2,829,633 to 2,830,670 _RS12795 LRK53_RS12800: LRK53_RS12800 - DUF4190 domain-containing protein, at 2,830,793 to 2,831,095 _RS12800 LRK53_RS12805: LRK53_RS12805 - aldehyde dehydrogenase family protein, at 2,831,187 to 2,832,722 _RS12805 Position (kb) 2830 2831 2832Strain fitness (log2 ratio) -2 -1 0 1 2at 2830.667 kb on - strandat 2830.667 kb on - strandat 2830.667 kb on - strandat 2830.667 kb on - strandat 2830.878 kb on + strand, within LRK53_RS12800at 2830.879 kb on - strand, within LRK53_RS12800at 2830.879 kb on - strand, within LRK53_RS12800at 2830.879 kb on - strand, within LRK53_RS12800at 2830.879 kb on - strand, within LRK53_RS12800at 2830.879 kb on - strand, within LRK53_RS12800at 2830.879 kb on - strand, within LRK53_RS12800at 2830.879 kb on - strand, within LRK53_RS12800at 2831.088 kb on + strandat 2831.088 kb on + strandat 2831.088 kb on + strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.089 kb on - strandat 2831.139 kb on - strandat 2831.139 kb on - strandat 2831.139 kb on - strandat 2831.139 kb on - strandat 2831.139 kb on - strandat 2831.139 kb on - strandat 2831.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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2,830,667 - -0.9
2,830,667 - +2.1
2,830,667 - -1.2
2,830,667 - -1.9
2,830,878 + LRK53_RS12800 0.28 -1.0
2,830,879 - LRK53_RS12800 0.28 -0.9
2,830,879 - LRK53_RS12800 0.28 +2.1
2,830,879 - LRK53_RS12800 0.28 -0.4
2,830,879 - LRK53_RS12800 0.28 -0.7
2,830,879 - LRK53_RS12800 0.28 +0.6
2,830,879 - LRK53_RS12800 0.28 -2.0
2,830,879 - LRK53_RS12800 0.28 -0.7
2,831,088 + -1.2
2,831,088 + -0.4
2,831,088 + +0.1
2,831,089 - -0.7
2,831,089 - -0.1
2,831,089 - -0.6
2,831,089 - +1.7
2,831,089 - -0.1
2,831,089 - -1.9
2,831,089 - -0.8
2,831,089 - -1.0
2,831,089 - +0.6
2,831,089 - +0.1
2,831,089 - +0.1
2,831,089 - -0.4
2,831,089 - +0.1
2,831,089 - -0.9
2,831,089 - -0.7
2,831,089 - -1.4
2,831,089 - -0.9
2,831,089 - -0.7
2,831,139 - -0.4
2,831,139 - -0.3
2,831,139 - -0.4
2,831,139 - -0.4
2,831,139 - -0.2
2,831,139 - -2.3
2,831,139 - -1.0

Or see this region's nucleotide sequence