Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11990

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11985 and LRK53_RS11990 are separated by 93 nucleotidesLRK53_RS11990 and LRK53_RS11995 are separated by 159 nucleotides LRK53_RS11985: LRK53_RS11985 - signal peptidase I, at 2,671,372 to 2,672,268 _RS11985 LRK53_RS11990: LRK53_RS11990 - translation elongation factor 4, at 2,672,362 to 2,674,155 _RS11990 LRK53_RS11995: LRK53_RS11995 - Do family serine endopeptidase, at 2,674,315 to 2,675,787 _RS11995 Position (kb) 2672 2673 2674 2675Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2672.364 kb on - strandat 2672.492 kb on + strandat 2672.492 kb on + strandat 2672.744 kb on + strand, within LRK53_RS11990at 2672.744 kb on + strand, within LRK53_RS11990at 2672.744 kb on + strand, within LRK53_RS11990at 2672.744 kb on + strand, within LRK53_RS11990at 2672.759 kb on + strand, within LRK53_RS11990at 2672.825 kb on + strand, within LRK53_RS11990at 2672.825 kb on + strand, within LRK53_RS11990at 2672.825 kb on + strand, within LRK53_RS11990at 2672.826 kb on - strand, within LRK53_RS11990at 2672.826 kb on - strand, within LRK53_RS11990at 2672.852 kb on + strand, within LRK53_RS11990at 2672.852 kb on + strand, within LRK53_RS11990at 2672.852 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.912 kb on + strand, within LRK53_RS11990at 2672.913 kb on - strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.041 kb on + strand, within LRK53_RS11990at 2673.042 kb on - strand, within LRK53_RS11990at 2673.042 kb on - strand, within LRK53_RS11990at 2673.042 kb on - strand, within LRK53_RS11990at 2673.042 kb on - strand, within LRK53_RS11990at 2673.042 kb on - strand, within LRK53_RS11990at 2673.042 kb on - strand, within LRK53_RS11990at 2673.042 kb on - strand, within LRK53_RS11990at 2673.080 kb on + strand, within LRK53_RS11990at 2673.548 kb on + strand, within LRK53_RS11990at 2673.548 kb on + strand, within LRK53_RS11990at 2673.548 kb on + strand, within LRK53_RS11990at 2673.548 kb on + strand, within LRK53_RS11990at 2673.548 kb on + strand, within LRK53_RS11990at 2673.548 kb on + strand, within LRK53_RS11990at 2673.548 kb on + strand, within LRK53_RS11990at 2673.548 kb on + strand, within LRK53_RS11990at 2673.549 kb on - strand, within LRK53_RS11990at 2673.549 kb on - strand, within LRK53_RS11990at 2673.549 kb on - strand, within LRK53_RS11990at 2673.549 kb on - strand, within LRK53_RS11990at 2673.549 kb on - strand, within LRK53_RS11990at 2673.549 kb on - strand, within LRK53_RS11990at 2673.806 kb on + strand, within LRK53_RS11990at 2673.806 kb on + strand, within LRK53_RS11990at 2673.806 kb on + strand, within LRK53_RS11990at 2673.806 kb on + strand, within LRK53_RS11990at 2673.806 kb on + strand, within LRK53_RS11990at 2673.806 kb on + strand, within LRK53_RS11990at 2673.807 kb on - strand, within LRK53_RS11990at 2673.807 kb on - strand, within LRK53_RS11990at 2673.807 kb on - strand, within LRK53_RS11990at 2673.807 kb on - strand, within LRK53_RS11990at 2673.807 kb on - strand, within LRK53_RS11990at 2673.899 kb on + strand, within LRK53_RS11990at 2673.944 kb on + strand, within LRK53_RS11990at 2673.944 kb on + strand, within LRK53_RS11990at 2673.944 kb on + strand, within LRK53_RS11990at 2673.944 kb on + strand, within LRK53_RS11990at 2673.944 kb on + strand, within LRK53_RS11990at 2673.944 kb on + strand, within LRK53_RS11990at 2673.944 kb on + strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.945 kb on - strand, within LRK53_RS11990at 2673.968 kb on + strand, within LRK53_RS11990at 2673.968 kb on + strand, within LRK53_RS11990at 2673.969 kb on - strand, within LRK53_RS11990at 2673.969 kb on - strand, within LRK53_RS11990at 2674.381 kb on + strandat 2674.382 kb on - strandat 2674.382 kb on - strandat 2674.382 kb on - strandat 2674.382 kb on - strandat 2674.582 kb on + strand, within LRK53_RS11995at 2674.582 kb on + strand, within LRK53_RS11995at 2674.582 kb on + strand, within LRK53_RS11995at 2674.583 kb on - strand, within LRK53_RS11995at 2674.583 kb on - strand, within LRK53_RS11995at 2674.583 kb on - strand, within LRK53_RS11995at 2674.583 kb on - strand, within LRK53_RS11995at 2674.583 kb on - strand, within LRK53_RS11995at 2674.583 kb on - strand, within LRK53_RS11995at 2674.799 kb on + strand, within LRK53_RS11995at 2674.799 kb on + strand, within LRK53_RS11995at 2674.800 kb on - strand, within LRK53_RS11995at 2674.800 kb on - strand, within LRK53_RS11995at 2674.867 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.961 kb on + strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2674.962 kb on - strand, within LRK53_RS11995at 2675.033 kb on + strand, within LRK53_RS11995at 2675.033 kb on + strand, within LRK53_RS11995at 2675.034 kb on - strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.051 kb on + strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.052 kb on - strand, within LRK53_RS11995at 2675.153 kb on + strand, within LRK53_RS11995at 2675.153 kb on + strand, within LRK53_RS11995at 2675.153 kb on + strand, within LRK53_RS11995at 2675.153 kb on + strand, within LRK53_RS11995at 2675.153 kb on + strand, within LRK53_RS11995at 2675.153 kb on + strand, within LRK53_RS11995at 2675.153 kb on + strand, within LRK53_RS11995at 2675.154 kb on - strand, within LRK53_RS11995at 2675.154 kb on - strand, within LRK53_RS11995at 2675.154 kb on - strand, within LRK53_RS11995at 2675.154 kb on - strand, within LRK53_RS11995at 2675.154 kb on - strand, within LRK53_RS11995

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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2,672,364 - -0.0
2,672,492 + -2.7
2,672,492 + -1.7
2,672,744 + LRK53_RS11990 0.21 -1.2
2,672,744 + LRK53_RS11990 0.21 -0.7
2,672,744 + LRK53_RS11990 0.21 -1.2
2,672,744 + LRK53_RS11990 0.21 +0.1
2,672,759 + LRK53_RS11990 0.22 +0.8
2,672,825 + LRK53_RS11990 0.26 -1.5
2,672,825 + LRK53_RS11990 0.26 -0.3
2,672,825 + LRK53_RS11990 0.26 +2.7
2,672,826 - LRK53_RS11990 0.26 -1.9
2,672,826 - LRK53_RS11990 0.26 -0.5
2,672,852 + LRK53_RS11990 0.27 -0.2
2,672,852 + LRK53_RS11990 0.27 -1.2
2,672,852 + LRK53_RS11990 0.27 -0.5
2,672,912 + LRK53_RS11990 0.31 +1.4
2,672,912 + LRK53_RS11990 0.31 +2.7
2,672,912 + LRK53_RS11990 0.31 -0.6
2,672,912 + LRK53_RS11990 0.31 -0.9
2,672,912 + LRK53_RS11990 0.31 -1.5
2,672,912 + LRK53_RS11990 0.31 -0.9
2,672,912 + LRK53_RS11990 0.31 +1.5
2,672,912 + LRK53_RS11990 0.31 -1.4
2,672,912 + LRK53_RS11990 0.31 -1.3
2,672,912 + LRK53_RS11990 0.31 -1.9
2,672,913 - LRK53_RS11990 0.31 +1.1
2,673,041 + LRK53_RS11990 0.38 -0.1
2,673,041 + LRK53_RS11990 0.38 -1.7
2,673,041 + LRK53_RS11990 0.38 -1.2
2,673,041 + LRK53_RS11990 0.38 -0.6
2,673,041 + LRK53_RS11990 0.38 -1.0
2,673,041 + LRK53_RS11990 0.38 -2.2
2,673,041 + LRK53_RS11990 0.38 -0.3
2,673,041 + LRK53_RS11990 0.38 -0.9
2,673,041 + LRK53_RS11990 0.38 +0.1
2,673,041 + LRK53_RS11990 0.38 +2.1
2,673,041 + LRK53_RS11990 0.38 +0.7
2,673,041 + LRK53_RS11990 0.38 -0.5
2,673,041 + LRK53_RS11990 0.38 -1.8
2,673,041 + LRK53_RS11990 0.38 +1.1
2,673,041 + LRK53_RS11990 0.38 +0.1
2,673,041 + LRK53_RS11990 0.38 +0.1
2,673,041 + LRK53_RS11990 0.38 -1.5
2,673,041 + LRK53_RS11990 0.38 +0.3
2,673,041 + LRK53_RS11990 0.38 +1.8
2,673,042 - LRK53_RS11990 0.38 +0.1
2,673,042 - LRK53_RS11990 0.38 +1.1
2,673,042 - LRK53_RS11990 0.38 -1.0
2,673,042 - LRK53_RS11990 0.38 +2.1
2,673,042 - LRK53_RS11990 0.38 -0.1
2,673,042 - LRK53_RS11990 0.38 -0.2
2,673,042 - LRK53_RS11990 0.38 +0.1
2,673,080 + LRK53_RS11990 0.40 -2.1
2,673,548 + LRK53_RS11990 0.66 +0.1
2,673,548 + LRK53_RS11990 0.66 -1.4
2,673,548 + LRK53_RS11990 0.66 -0.5
2,673,548 + LRK53_RS11990 0.66 +0.4
2,673,548 + LRK53_RS11990 0.66 -0.5
2,673,548 + LRK53_RS11990 0.66 -2.2
2,673,548 + LRK53_RS11990 0.66 -0.9
2,673,548 + LRK53_RS11990 0.66 -1.2
2,673,549 - LRK53_RS11990 0.66 -0.5
2,673,549 - LRK53_RS11990 0.66 -1.7
2,673,549 - LRK53_RS11990 0.66 -0.1
2,673,549 - LRK53_RS11990 0.66 -1.1
2,673,549 - LRK53_RS11990 0.66 +0.2
2,673,549 - LRK53_RS11990 0.66 -1.7
2,673,806 + LRK53_RS11990 0.80 -0.5
2,673,806 + LRK53_RS11990 0.80 -0.9
2,673,806 + LRK53_RS11990 0.80 -0.2
2,673,806 + LRK53_RS11990 0.80 -0.9
2,673,806 + LRK53_RS11990 0.80 +2.1
2,673,806 + LRK53_RS11990 0.80 -0.5
2,673,807 - LRK53_RS11990 0.81 -1.5
2,673,807 - LRK53_RS11990 0.81 -0.9
2,673,807 - LRK53_RS11990 0.81 +0.1
2,673,807 - LRK53_RS11990 0.81 -1.9
2,673,807 - LRK53_RS11990 0.81 -0.9
2,673,899 + LRK53_RS11990 0.86 +1.1
2,673,944 + LRK53_RS11990 0.88 -0.5
2,673,944 + LRK53_RS11990 0.88 -0.6
2,673,944 + LRK53_RS11990 0.88 +0.4
2,673,944 + LRK53_RS11990 0.88 +0.3
2,673,944 + LRK53_RS11990 0.88 -0.1
2,673,944 + LRK53_RS11990 0.88 -1.8
2,673,944 + LRK53_RS11990 0.88 +1.1
2,673,945 - LRK53_RS11990 0.88 -1.9
2,673,945 - LRK53_RS11990 0.88 -2.5
2,673,945 - LRK53_RS11990 0.88 -0.9
2,673,945 - LRK53_RS11990 0.88 +2.1
2,673,945 - LRK53_RS11990 0.88 +3.1
2,673,945 - LRK53_RS11990 0.88 -2.2
2,673,945 - LRK53_RS11990 0.88 +3.1
2,673,945 - LRK53_RS11990 0.88 -2.2
2,673,945 - LRK53_RS11990 0.88 +0.8
2,673,945 - LRK53_RS11990 0.88 -1.5
2,673,945 - LRK53_RS11990 0.88 -0.3
2,673,945 - LRK53_RS11990 0.88 +1.1
2,673,945 - LRK53_RS11990 0.88 +1.7
2,673,968 + LRK53_RS11990 0.90 +0.1
2,673,968 + LRK53_RS11990 0.90 -1.2
2,673,969 - LRK53_RS11990 0.90 -1.5
2,673,969 - LRK53_RS11990 0.90 -1.7
2,674,381 + +0.8
2,674,382 - +0.2
2,674,382 - +1.2
2,674,382 - -1.2
2,674,382 - +0.8
2,674,582 + LRK53_RS11995 0.18 -0.9
2,674,582 + LRK53_RS11995 0.18 +2.4
2,674,582 + LRK53_RS11995 0.18 +1.1
2,674,583 - LRK53_RS11995 0.18 -1.2
2,674,583 - LRK53_RS11995 0.18 -1.2
2,674,583 - LRK53_RS11995 0.18 -1.3
2,674,583 - LRK53_RS11995 0.18 +1.7
2,674,583 - LRK53_RS11995 0.18 -0.7
2,674,583 - LRK53_RS11995 0.18 -2.1
2,674,799 + LRK53_RS11995 0.33 -0.9
2,674,799 + LRK53_RS11995 0.33 -2.1
2,674,800 - LRK53_RS11995 0.33 -1.1
2,674,800 - LRK53_RS11995 0.33 +1.7
2,674,867 + LRK53_RS11995 0.37 +0.5
2,674,961 + LRK53_RS11995 0.44 -0.1
2,674,961 + LRK53_RS11995 0.44 -0.3
2,674,961 + LRK53_RS11995 0.44 +1.1
2,674,961 + LRK53_RS11995 0.44 +3.7
2,674,961 + LRK53_RS11995 0.44 -0.2
2,674,961 + LRK53_RS11995 0.44 +0.3
2,674,961 + LRK53_RS11995 0.44 -0.5
2,674,961 + LRK53_RS11995 0.44 -0.4
2,674,961 + LRK53_RS11995 0.44 -1.5
2,674,961 + LRK53_RS11995 0.44 +0.1
2,674,961 + LRK53_RS11995 0.44 -2.6
2,674,962 - LRK53_RS11995 0.44 +0.5
2,674,962 - LRK53_RS11995 0.44 +1.0
2,674,962 - LRK53_RS11995 0.44 -0.2
2,674,962 - LRK53_RS11995 0.44 -0.5
2,674,962 - LRK53_RS11995 0.44 -0.6
2,674,962 - LRK53_RS11995 0.44 +1.3
2,674,962 - LRK53_RS11995 0.44 -0.4
2,674,962 - LRK53_RS11995 0.44 +1.1
2,674,962 - LRK53_RS11995 0.44 -0.9
2,674,962 - LRK53_RS11995 0.44 -0.4
2,675,033 + LRK53_RS11995 0.49 +0.3
2,675,033 + LRK53_RS11995 0.49 +0.1
2,675,034 - LRK53_RS11995 0.49 -0.3
2,675,051 + LRK53_RS11995 0.50 +0.3
2,675,051 + LRK53_RS11995 0.50 +0.2
2,675,051 + LRK53_RS11995 0.50 -0.9
2,675,051 + LRK53_RS11995 0.50 -0.5
2,675,051 + LRK53_RS11995 0.50 -1.1
2,675,051 + LRK53_RS11995 0.50 -1.2
2,675,051 + LRK53_RS11995 0.50 +1.5
2,675,051 + LRK53_RS11995 0.50 +1.1
2,675,051 + LRK53_RS11995 0.50 -2.1
2,675,051 + LRK53_RS11995 0.50 +1.9
2,675,051 + LRK53_RS11995 0.50 +0.7
2,675,052 - LRK53_RS11995 0.50 +1.0
2,675,052 - LRK53_RS11995 0.50 -0.2
2,675,052 - LRK53_RS11995 0.50 +2.1
2,675,052 - LRK53_RS11995 0.50 -0.4
2,675,052 - LRK53_RS11995 0.50 -0.2
2,675,052 - LRK53_RS11995 0.50 +0.1
2,675,052 - LRK53_RS11995 0.50 -1.7
2,675,052 - LRK53_RS11995 0.50 -1.7
2,675,052 - LRK53_RS11995 0.50 -2.1
2,675,052 - LRK53_RS11995 0.50 +1.1
2,675,052 - LRK53_RS11995 0.50 -0.5
2,675,052 - LRK53_RS11995 0.50 -1.2
2,675,153 + LRK53_RS11995 0.57 -0.1
2,675,153 + LRK53_RS11995 0.57 +0.1
2,675,153 + LRK53_RS11995 0.57 +0.6
2,675,153 + LRK53_RS11995 0.57 -0.1
2,675,153 + LRK53_RS11995 0.57 -0.7
2,675,153 + LRK53_RS11995 0.57 -0.2
2,675,153 + LRK53_RS11995 0.57 -1.0
2,675,154 - LRK53_RS11995 0.57 +1.1
2,675,154 - LRK53_RS11995 0.57 +0.4
2,675,154 - LRK53_RS11995 0.57 +0.1
2,675,154 - LRK53_RS11995 0.57 +0.4
2,675,154 - LRK53_RS11995 0.57 +0.8

Or see this region's nucleotide sequence