Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11410 and LRK53_RS11415 are separated by 296 nucleotides LRK53_RS11415 and LRK53_RS11420 are separated by 74 nucleotides LRK53_RS11420 and LRK53_RS11425 are separated by 17 nucleotides LRK53_RS11425 and LRK53_RS11430 overlap by 8 nucleotides LRK53_RS11430 and LRK53_RS11435 are separated by 204 nucleotides
LRK53_RS11410: LRK53_RS11410 - MASE1 domain-containing protein, at 2,544,295 to 2,545,887
_RS11410
LRK53_RS11415: LRK53_RS11415 - ferric iron uptake transcriptional regulator, at 2,546,184 to 2,546,606
_RS11415
LRK53_RS11420: LRK53_RS11420 - outer membrane protein assembly factor BamE, at 2,546,681 to 2,547,151
_RS11420
LRK53_RS11425: LRK53_RS11425 - RnfH family protein, at 2,547,169 to 2,547,447
_RS11425
LRK53_RS11430: LRK53_RS11430 - type II toxin-antitoxin system RatA family toxin, at 2,547,440 to 2,547,871
_RS11430
LRK53_RS11435: LRK53_RS11435 - SsrA-binding protein SmpB, at 2,548,076 to 2,548,567
_RS11435
Position (kb)
2546
2547
2548 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2545.891 kb on + strand at 2545.892 kb on - strand at 2545.892 kb on - strand at 2545.929 kb on + strand at 2545.930 kb on - strand at 2546.035 kb on + strand at 2546.035 kb on + strand at 2546.035 kb on + strand at 2546.036 kb on - strand at 2546.089 kb on + strand at 2546.089 kb on + strand at 2546.089 kb on + strand at 2546.089 kb on + strand at 2546.089 kb on + strand at 2546.089 kb on + strand at 2546.090 kb on - strand at 2546.090 kb on - strand at 2546.090 kb on - strand at 2546.090 kb on - strand at 2546.135 kb on + strand at 2546.135 kb on + strand at 2546.136 kb on - strand at 2546.136 kb on - strand at 2546.136 kb on - strand at 2546.136 kb on - strand at 2546.136 kb on - strand at 2546.136 kb on - strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.644 kb on + strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.645 kb on - strand at 2546.863 kb on + strand, within LRK53_RS11420 at 2546.863 kb on + strand, within LRK53_RS11420 at 2546.864 kb on - strand, within LRK53_RS11420 at 2546.891 kb on + strand, within LRK53_RS11420 at 2546.891 kb on + strand, within LRK53_RS11420 at 2546.891 kb on + strand, within LRK53_RS11420 at 2546.892 kb on - strand, within LRK53_RS11420 at 2546.895 kb on + strand, within LRK53_RS11420 at 2546.895 kb on + strand, within LRK53_RS11420 at 2546.962 kb on + strand, within LRK53_RS11420 at 2546.962 kb on + strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.963 kb on - strand, within LRK53_RS11420 at 2546.974 kb on + strand, within LRK53_RS11420 at 2546.974 kb on + strand, within LRK53_RS11420 at 2547.032 kb on + strand, within LRK53_RS11420 at 2547.032 kb on + strand, within LRK53_RS11420 at 2547.032 kb on + strand, within LRK53_RS11420 at 2547.032 kb on + strand, within LRK53_RS11420 at 2547.032 kb on + strand, within LRK53_RS11420 at 2547.032 kb on + strand, within LRK53_RS11420 at 2547.032 kb on + strand, within LRK53_RS11420 at 2547.032 kb on + strand, within LRK53_RS11420 at 2547.033 kb on - strand, within LRK53_RS11420 at 2547.033 kb on - strand, within LRK53_RS11420 at 2547.033 kb on - strand, within LRK53_RS11420 at 2547.033 kb on - strand, within LRK53_RS11420 at 2547.033 kb on - strand, within LRK53_RS11420 at 2547.221 kb on + strand, within LRK53_RS11425 at 2547.221 kb on + strand, within LRK53_RS11425 at 2547.221 kb on + strand, within LRK53_RS11425 at 2547.222 kb on - strand, within LRK53_RS11425 at 2547.222 kb on - strand, within LRK53_RS11425 at 2547.413 kb on + strand, within LRK53_RS11425 at 2547.414 kb on - strand, within LRK53_RS11425 at 2547.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 2,545,891 + -1.4 2,545,892 - -0.7 2,545,892 - +0.1 2,545,929 + -0.2 2,545,930 - +1.1 2,546,035 + -0.3 2,546,035 + +0.5 2,546,035 + -2.2 2,546,036 - -1.7 2,546,089 + -1.0 2,546,089 + -1.7 2,546,089 + -0.7 2,546,089 + -1.7 2,546,089 + -0.5 2,546,089 + -0.0 2,546,090 - +0.1 2,546,090 - -0.6 2,546,090 - -0.9 2,546,090 - +0.7 2,546,135 + -2.2 2,546,135 + -0.9 2,546,136 - +0.1 2,546,136 - -0.3 2,546,136 - -0.1 2,546,136 - -0.2 2,546,136 - -0.0 2,546,136 - -0.5 2,546,644 + -0.9 2,546,644 + +0.2 2,546,644 + -1.3 2,546,644 + +1.0 2,546,644 + -0.5 2,546,644 + -0.3 2,546,644 + -0.9 2,546,644 + +0.0 2,546,644 + +0.8 2,546,644 + -0.9 2,546,644 + -0.5 2,546,644 + -1.2 2,546,644 + -0.3 2,546,644 + -0.2 2,546,644 + +0.1 2,546,644 + +0.5 2,546,644 + +1.1 2,546,644 + -0.3 2,546,644 + -0.3 2,546,644 + +0.1 2,546,644 + -2.1 2,546,644 + +1.1 2,546,644 + -0.1 2,546,645 - -1.7 2,546,645 - +0.1 2,546,645 - -0.5 2,546,645 - +2.7 2,546,645 - -0.8 2,546,645 - +0.4 2,546,645 - -0.9 2,546,645 - -1.2 2,546,645 - -1.5 2,546,645 - -0.8 2,546,645 - +0.1 2,546,645 - +0.3 2,546,645 - +1.1 2,546,645 - -0.0 2,546,645 - -0.3 2,546,645 - -0.5 2,546,645 - -0.5 2,546,645 - -0.2 2,546,645 - -0.6 2,546,863 + LRK53_RS11420 0.39 +1.1 2,546,863 + LRK53_RS11420 0.39 +0.1 2,546,864 - LRK53_RS11420 0.39 +1.1 2,546,891 + LRK53_RS11420 0.45 -0.5 2,546,891 + LRK53_RS11420 0.45 +1.1 2,546,891 + LRK53_RS11420 0.45 +1.1 2,546,892 - LRK53_RS11420 0.45 +0.1 2,546,895 + LRK53_RS11420 0.45 +0.1 2,546,895 + LRK53_RS11420 0.45 -1.7 2,546,962 + LRK53_RS11420 0.60 +0.1 2,546,962 + LRK53_RS11420 0.60 +0.1 2,546,963 - LRK53_RS11420 0.60 +1.1 2,546,963 - LRK53_RS11420 0.60 -0.9 2,546,963 - LRK53_RS11420 0.60 -1.2 2,546,963 - LRK53_RS11420 0.60 +1.1 2,546,963 - LRK53_RS11420 0.60 -1.2 2,546,963 - LRK53_RS11420 0.60 +2.3 2,546,963 - LRK53_RS11420 0.60 -1.5 2,546,963 - LRK53_RS11420 0.60 -2.1 2,546,963 - LRK53_RS11420 0.60 -2.2 2,546,963 - LRK53_RS11420 0.60 -0.5 2,546,963 - LRK53_RS11420 0.60 +0.1 2,546,974 + LRK53_RS11420 0.62 -2.2 2,546,974 + LRK53_RS11420 0.62 +3.7 2,547,032 + LRK53_RS11420 0.75 -1.5 2,547,032 + LRK53_RS11420 0.75 -1.6 2,547,032 + LRK53_RS11420 0.75 -0.4 2,547,032 + LRK53_RS11420 0.75 -2.7 2,547,032 + LRK53_RS11420 0.75 +1.0 2,547,032 + LRK53_RS11420 0.75 -1.1 2,547,032 + LRK53_RS11420 0.75 +0.4 2,547,032 + LRK53_RS11420 0.75 -2.1 2,547,033 - LRK53_RS11420 0.75 -0.8 2,547,033 - LRK53_RS11420 0.75 -2.7 2,547,033 - LRK53_RS11420 0.75 +0.1 2,547,033 - LRK53_RS11420 0.75 -0.7 2,547,033 - LRK53_RS11420 0.75 -1.3 2,547,221 + LRK53_RS11425 0.19 -1.7 2,547,221 + LRK53_RS11425 0.19 +0.8 2,547,221 + LRK53_RS11425 0.19 -0.2 2,547,222 - LRK53_RS11425 0.19 +0.2 2,547,222 - LRK53_RS11425 0.19 -0.2 2,547,413 + LRK53_RS11425 0.87 +3.1 2,547,414 - LRK53_RS11425 0.88 +1.1 2,547,946 + -1.7
Or see this region's nucleotide sequence