Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11420

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11410 and LRK53_RS11415 are separated by 296 nucleotidesLRK53_RS11415 and LRK53_RS11420 are separated by 74 nucleotidesLRK53_RS11420 and LRK53_RS11425 are separated by 17 nucleotidesLRK53_RS11425 and LRK53_RS11430 overlap by 8 nucleotidesLRK53_RS11430 and LRK53_RS11435 are separated by 204 nucleotides LRK53_RS11410: LRK53_RS11410 - MASE1 domain-containing protein, at 2,544,295 to 2,545,887 _RS11410 LRK53_RS11415: LRK53_RS11415 - ferric iron uptake transcriptional regulator, at 2,546,184 to 2,546,606 _RS11415 LRK53_RS11420: LRK53_RS11420 - outer membrane protein assembly factor BamE, at 2,546,681 to 2,547,151 _RS11420 LRK53_RS11425: LRK53_RS11425 - RnfH family protein, at 2,547,169 to 2,547,447 _RS11425 LRK53_RS11430: LRK53_RS11430 - type II toxin-antitoxin system RatA family toxin, at 2,547,440 to 2,547,871 _RS11430 LRK53_RS11435: LRK53_RS11435 - SsrA-binding protein SmpB, at 2,548,076 to 2,548,567 _RS11435 Position (kb) 2546 2547 2548Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2545.891 kb on + strandat 2545.892 kb on - strandat 2545.892 kb on - strandat 2545.929 kb on + strandat 2545.930 kb on - strandat 2546.035 kb on + strandat 2546.035 kb on + strandat 2546.035 kb on + strandat 2546.036 kb on - strandat 2546.089 kb on + strandat 2546.089 kb on + strandat 2546.089 kb on + strandat 2546.089 kb on + strandat 2546.089 kb on + strandat 2546.089 kb on + strandat 2546.090 kb on - strandat 2546.090 kb on - strandat 2546.090 kb on - strandat 2546.090 kb on - strandat 2546.135 kb on + strandat 2546.135 kb on + strandat 2546.136 kb on - strandat 2546.136 kb on - strandat 2546.136 kb on - strandat 2546.136 kb on - strandat 2546.136 kb on - strandat 2546.136 kb on - strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.644 kb on + strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.645 kb on - strandat 2546.863 kb on + strand, within LRK53_RS11420at 2546.863 kb on + strand, within LRK53_RS11420at 2546.864 kb on - strand, within LRK53_RS11420at 2546.891 kb on + strand, within LRK53_RS11420at 2546.891 kb on + strand, within LRK53_RS11420at 2546.891 kb on + strand, within LRK53_RS11420at 2546.892 kb on - strand, within LRK53_RS11420at 2546.895 kb on + strand, within LRK53_RS11420at 2546.895 kb on + strand, within LRK53_RS11420at 2546.962 kb on + strand, within LRK53_RS11420at 2546.962 kb on + strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.963 kb on - strand, within LRK53_RS11420at 2546.974 kb on + strand, within LRK53_RS11420at 2546.974 kb on + strand, within LRK53_RS11420at 2547.032 kb on + strand, within LRK53_RS11420at 2547.032 kb on + strand, within LRK53_RS11420at 2547.032 kb on + strand, within LRK53_RS11420at 2547.032 kb on + strand, within LRK53_RS11420at 2547.032 kb on + strand, within LRK53_RS11420at 2547.032 kb on + strand, within LRK53_RS11420at 2547.032 kb on + strand, within LRK53_RS11420at 2547.032 kb on + strand, within LRK53_RS11420at 2547.033 kb on - strand, within LRK53_RS11420at 2547.033 kb on - strand, within LRK53_RS11420at 2547.033 kb on - strand, within LRK53_RS11420at 2547.033 kb on - strand, within LRK53_RS11420at 2547.033 kb on - strand, within LRK53_RS11420at 2547.221 kb on + strand, within LRK53_RS11425at 2547.221 kb on + strand, within LRK53_RS11425at 2547.221 kb on + strand, within LRK53_RS11425at 2547.222 kb on - strand, within LRK53_RS11425at 2547.222 kb on - strand, within LRK53_RS11425at 2547.413 kb on + strand, within LRK53_RS11425at 2547.414 kb on - strand, within LRK53_RS11425at 2547.946 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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2,545,891 + -1.4
2,545,892 - -0.7
2,545,892 - +0.1
2,545,929 + -0.2
2,545,930 - +1.1
2,546,035 + -0.3
2,546,035 + +0.5
2,546,035 + -2.2
2,546,036 - -1.7
2,546,089 + -1.0
2,546,089 + -1.7
2,546,089 + -0.7
2,546,089 + -1.7
2,546,089 + -0.5
2,546,089 + -0.0
2,546,090 - +0.1
2,546,090 - -0.6
2,546,090 - -0.9
2,546,090 - +0.7
2,546,135 + -2.2
2,546,135 + -0.9
2,546,136 - +0.1
2,546,136 - -0.3
2,546,136 - -0.1
2,546,136 - -0.2
2,546,136 - -0.0
2,546,136 - -0.5
2,546,644 + -0.9
2,546,644 + +0.2
2,546,644 + -1.3
2,546,644 + +1.0
2,546,644 + -0.5
2,546,644 + -0.3
2,546,644 + -0.9
2,546,644 + +0.0
2,546,644 + +0.8
2,546,644 + -0.9
2,546,644 + -0.5
2,546,644 + -1.2
2,546,644 + -0.3
2,546,644 + -0.2
2,546,644 + +0.1
2,546,644 + +0.5
2,546,644 + +1.1
2,546,644 + -0.3
2,546,644 + -0.3
2,546,644 + +0.1
2,546,644 + -2.1
2,546,644 + +1.1
2,546,644 + -0.1
2,546,645 - -1.7
2,546,645 - +0.1
2,546,645 - -0.5
2,546,645 - +2.7
2,546,645 - -0.8
2,546,645 - +0.4
2,546,645 - -0.9
2,546,645 - -1.2
2,546,645 - -1.5
2,546,645 - -0.8
2,546,645 - +0.1
2,546,645 - +0.3
2,546,645 - +1.1
2,546,645 - -0.0
2,546,645 - -0.3
2,546,645 - -0.5
2,546,645 - -0.5
2,546,645 - -0.2
2,546,645 - -0.6
2,546,863 + LRK53_RS11420 0.39 +1.1
2,546,863 + LRK53_RS11420 0.39 +0.1
2,546,864 - LRK53_RS11420 0.39 +1.1
2,546,891 + LRK53_RS11420 0.45 -0.5
2,546,891 + LRK53_RS11420 0.45 +1.1
2,546,891 + LRK53_RS11420 0.45 +1.1
2,546,892 - LRK53_RS11420 0.45 +0.1
2,546,895 + LRK53_RS11420 0.45 +0.1
2,546,895 + LRK53_RS11420 0.45 -1.7
2,546,962 + LRK53_RS11420 0.60 +0.1
2,546,962 + LRK53_RS11420 0.60 +0.1
2,546,963 - LRK53_RS11420 0.60 +1.1
2,546,963 - LRK53_RS11420 0.60 -0.9
2,546,963 - LRK53_RS11420 0.60 -1.2
2,546,963 - LRK53_RS11420 0.60 +1.1
2,546,963 - LRK53_RS11420 0.60 -1.2
2,546,963 - LRK53_RS11420 0.60 +2.3
2,546,963 - LRK53_RS11420 0.60 -1.5
2,546,963 - LRK53_RS11420 0.60 -2.1
2,546,963 - LRK53_RS11420 0.60 -2.2
2,546,963 - LRK53_RS11420 0.60 -0.5
2,546,963 - LRK53_RS11420 0.60 +0.1
2,546,974 + LRK53_RS11420 0.62 -2.2
2,546,974 + LRK53_RS11420 0.62 +3.7
2,547,032 + LRK53_RS11420 0.75 -1.5
2,547,032 + LRK53_RS11420 0.75 -1.6
2,547,032 + LRK53_RS11420 0.75 -0.4
2,547,032 + LRK53_RS11420 0.75 -2.7
2,547,032 + LRK53_RS11420 0.75 +1.0
2,547,032 + LRK53_RS11420 0.75 -1.1
2,547,032 + LRK53_RS11420 0.75 +0.4
2,547,032 + LRK53_RS11420 0.75 -2.1
2,547,033 - LRK53_RS11420 0.75 -0.8
2,547,033 - LRK53_RS11420 0.75 -2.7
2,547,033 - LRK53_RS11420 0.75 +0.1
2,547,033 - LRK53_RS11420 0.75 -0.7
2,547,033 - LRK53_RS11420 0.75 -1.3
2,547,221 + LRK53_RS11425 0.19 -1.7
2,547,221 + LRK53_RS11425 0.19 +0.8
2,547,221 + LRK53_RS11425 0.19 -0.2
2,547,222 - LRK53_RS11425 0.19 +0.2
2,547,222 - LRK53_RS11425 0.19 -0.2
2,547,413 + LRK53_RS11425 0.87 +3.1
2,547,414 - LRK53_RS11425 0.88 +1.1
2,547,946 + -1.7

Or see this region's nucleotide sequence