Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11145 and LRK53_RS11150 are separated by 4 nucleotides LRK53_RS11150 and LRK53_RS11155 are separated by 79 nucleotides LRK53_RS11155 and LRK53_RS11160 are separated by 165 nucleotides
LRK53_RS11145: LRK53_RS11145 - VOC family protein, at 2,487,521 to 2,488,078
_RS11145
LRK53_RS11150: LRK53_RS11150 - tRNA adenosine(34) deaminase TadA, at 2,488,083 to 2,488,571
_RS11150
LRK53_RS11155: LRK53_RS11155 - glutamine-hydrolyzing GMP synthase, at 2,488,651 to 2,490,243
_RS11155
LRK53_RS11160: LRK53_RS11160 - IMP dehydrogenase, at 2,490,409 to 2,491,866
_RS11160
Position (kb)
2488
2489
2490
2491 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.020 kb on + strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.021 kb on - strand, within LRK53_RS11145 at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.593 kb on + strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.594 kb on - strand at 2488.635 kb on + strand at 2488.636 kb on - strand at 2488.636 kb on - strand at 2488.636 kb on - strand at 2488.636 kb on - strand at 2488.636 kb on - strand at 2488.652 kb on + strand at 2488.653 kb on - strand at 2488.695 kb on - strand at 2488.760 kb on + strand at 2488.760 kb on + strand at 2488.760 kb on + strand at 2488.832 kb on + strand, within LRK53_RS11155 at 2488.833 kb on - strand, within LRK53_RS11155 at 2488.833 kb on - strand, within LRK53_RS11155 at 2488.907 kb on + strand, within LRK53_RS11155 at 2488.907 kb on + strand, within LRK53_RS11155 at 2488.907 kb on + strand, within LRK53_RS11155 at 2488.907 kb on + strand, within LRK53_RS11155 at 2488.907 kb on + strand, within LRK53_RS11155 at 2488.907 kb on + strand, within LRK53_RS11155 at 2488.908 kb on - strand, within LRK53_RS11155 at 2488.908 kb on - strand, within LRK53_RS11155 at 2488.970 kb on + strand, within LRK53_RS11155 at 2488.970 kb on + strand, within LRK53_RS11155 at 2488.970 kb on + strand, within LRK53_RS11155 at 2488.971 kb on - strand, within LRK53_RS11155 at 2488.971 kb on - strand, within LRK53_RS11155 at 2489.033 kb on + strand, within LRK53_RS11155 at 2489.033 kb on + strand, within LRK53_RS11155 at 2489.034 kb on - strand, within LRK53_RS11155 at 2489.034 kb on - strand, within LRK53_RS11155 at 2489.034 kb on - strand, within LRK53_RS11155 at 2489.216 kb on + strand, within LRK53_RS11155 at 2489.217 kb on - strand, within LRK53_RS11155 at 2489.217 kb on - strand, within LRK53_RS11155 at 2489.360 kb on + strand, within LRK53_RS11155 at 2489.360 kb on + strand, within LRK53_RS11155 at 2489.360 kb on + strand, within LRK53_RS11155 at 2489.360 kb on + strand, within LRK53_RS11155 at 2489.361 kb on - strand, within LRK53_RS11155 at 2489.361 kb on - strand, within LRK53_RS11155 at 2489.697 kb on + strand, within LRK53_RS11155 at 2489.697 kb on + strand, within LRK53_RS11155 at 2489.698 kb on - strand, within LRK53_RS11155 at 2489.698 kb on - strand, within LRK53_RS11155 at 2489.698 kb on - strand, within LRK53_RS11155 at 2489.729 kb on + strand, within LRK53_RS11155 at 2489.729 kb on + strand, within LRK53_RS11155 at 2489.730 kb on - strand, within LRK53_RS11155 at 2489.837 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.839 kb on + strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.840 kb on - strand, within LRK53_RS11155 at 2489.994 kb on + strand, within LRK53_RS11155 at 2489.994 kb on + strand, within LRK53_RS11155 at 2489.994 kb on + strand, within LRK53_RS11155 at 2489.994 kb on + strand, within LRK53_RS11155 at 2489.994 kb on + strand, within LRK53_RS11155 at 2489.995 kb on - strand, within LRK53_RS11155 at 2489.995 kb on - strand, within LRK53_RS11155 at 2490.149 kb on + strand at 2490.149 kb on + strand at 2490.149 kb on + strand at 2490.150 kb on - strand at 2490.191 kb on + strand at 2490.191 kb on + strand at 2490.191 kb on + strand at 2490.192 kb on - strand at 2490.192 kb on - strand at 2490.192 kb on - strand at 2490.192 kb on - strand at 2490.192 kb on - strand at 2490.192 kb on - strand at 2490.276 kb on - strand at 2490.276 kb on - strand at 2490.276 kb on - strand at 2490.276 kb on - strand at 2490.276 kb on - strand at 2490.276 kb on - strand at 2490.276 kb on - strand at 2490.276 kb on - strand at 2490.363 kb on + strand at 2490.363 kb on + strand at 2490.363 kb on + strand at 2490.363 kb on + strand at 2490.410 kb on + strand at 2490.410 kb on + strand at 2490.410 kb on + strand at 2490.410 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 2,488,020 + LRK53_RS11145 0.89 -0.2 2,488,020 + LRK53_RS11145 0.89 -1.1 2,488,020 + LRK53_RS11145 0.89 -1.5 2,488,020 + LRK53_RS11145 0.89 -1.5 2,488,020 + LRK53_RS11145 0.89 -0.8 2,488,020 + LRK53_RS11145 0.89 +0.5 2,488,020 + LRK53_RS11145 0.89 +0.8 2,488,020 + LRK53_RS11145 0.89 -1.2 2,488,020 + LRK53_RS11145 0.89 -0.7 2,488,020 + LRK53_RS11145 0.89 +2.7 2,488,020 + LRK53_RS11145 0.89 -0.5 2,488,020 + LRK53_RS11145 0.89 +0.5 2,488,020 + LRK53_RS11145 0.89 +0.5 2,488,020 + LRK53_RS11145 0.89 -0.1 2,488,021 - LRK53_RS11145 0.90 +2.1 2,488,021 - LRK53_RS11145 0.90 +0.5 2,488,021 - LRK53_RS11145 0.90 -1.3 2,488,021 - LRK53_RS11145 0.90 -1.7 2,488,021 - LRK53_RS11145 0.90 -1.1 2,488,021 - LRK53_RS11145 0.90 +1.7 2,488,021 - LRK53_RS11145 0.90 +2.1 2,488,021 - LRK53_RS11145 0.90 -0.7 2,488,021 - LRK53_RS11145 0.90 -0.4 2,488,021 - LRK53_RS11145 0.90 -0.3 2,488,021 - LRK53_RS11145 0.90 +0.2 2,488,021 - LRK53_RS11145 0.90 -0.2 2,488,593 + +0.1 2,488,593 + -2.2 2,488,593 + -0.5 2,488,593 + -2.1 2,488,593 + +0.9 2,488,593 + +0.6 2,488,593 + -0.7 2,488,593 + -0.7 2,488,593 + +0.3 2,488,593 + -0.7 2,488,593 + -0.1 2,488,593 + -0.3 2,488,593 + -0.9 2,488,593 + +0.7 2,488,593 + -0.8 2,488,593 + -0.5 2,488,593 + -0.1 2,488,594 - -1.0 2,488,594 - -1.2 2,488,594 - -0.3 2,488,594 - +1.1 2,488,594 - +0.7 2,488,594 - -1.1 2,488,594 - -1.5 2,488,594 - +0.0 2,488,594 - -0.0 2,488,594 - -0.3 2,488,594 - -0.3 2,488,594 - -1.5 2,488,594 - +0.9 2,488,594 - -0.4 2,488,635 + -1.2 2,488,636 - -0.6 2,488,636 - -0.9 2,488,636 - +0.8 2,488,636 - +0.5 2,488,636 - -0.5 2,488,652 + +0.1 2,488,653 - -0.4 2,488,695 - -1.9 2,488,760 + -2.4 2,488,760 + +0.1 2,488,760 + -1.9 2,488,832 + LRK53_RS11155 0.11 -3.1 2,488,833 - LRK53_RS11155 0.11 -1.9 2,488,833 - LRK53_RS11155 0.11 +0.7 2,488,907 + LRK53_RS11155 0.16 -2.8 2,488,907 + LRK53_RS11155 0.16 -0.9 2,488,907 + LRK53_RS11155 0.16 -0.5 2,488,907 + LRK53_RS11155 0.16 -1.7 2,488,907 + LRK53_RS11155 0.16 +0.1 2,488,907 + LRK53_RS11155 0.16 -1.7 2,488,908 - LRK53_RS11155 0.16 -1.9 2,488,908 - LRK53_RS11155 0.16 -0.9 2,488,970 + LRK53_RS11155 0.20 -1.5 2,488,970 + LRK53_RS11155 0.20 -0.2 2,488,970 + LRK53_RS11155 0.20 +0.1 2,488,971 - LRK53_RS11155 0.20 -0.5 2,488,971 - LRK53_RS11155 0.20 +0.1 2,489,033 + LRK53_RS11155 0.24 +1.5 2,489,033 + LRK53_RS11155 0.24 -1.9 2,489,034 - LRK53_RS11155 0.24 -0.8 2,489,034 - LRK53_RS11155 0.24 +0.1 2,489,034 - LRK53_RS11155 0.24 -1.5 2,489,216 + LRK53_RS11155 0.35 -1.2 2,489,217 - LRK53_RS11155 0.36 +0.5 2,489,217 - LRK53_RS11155 0.36 -0.5 2,489,360 + LRK53_RS11155 0.45 -0.2 2,489,360 + LRK53_RS11155 0.45 +0.6 2,489,360 + LRK53_RS11155 0.45 -1.2 2,489,360 + LRK53_RS11155 0.45 -1.4 2,489,361 - LRK53_RS11155 0.45 -2.1 2,489,361 - LRK53_RS11155 0.45 -2.0 2,489,697 + LRK53_RS11155 0.66 -1.5 2,489,697 + LRK53_RS11155 0.66 -2.1 2,489,698 - LRK53_RS11155 0.66 -1.2 2,489,698 - LRK53_RS11155 0.66 -1.0 2,489,698 - LRK53_RS11155 0.66 +0.4 2,489,729 + LRK53_RS11155 0.68 -1.9 2,489,729 + LRK53_RS11155 0.68 +1.1 2,489,730 - LRK53_RS11155 0.68 -0.6 2,489,837 + LRK53_RS11155 0.74 -1.9 2,489,839 + LRK53_RS11155 0.75 -0.7 2,489,839 + LRK53_RS11155 0.75 -1.5 2,489,839 + LRK53_RS11155 0.75 +1.1 2,489,839 + LRK53_RS11155 0.75 -2.3 2,489,839 + LRK53_RS11155 0.75 -0.9 2,489,839 + LRK53_RS11155 0.75 -1.4 2,489,839 + LRK53_RS11155 0.75 +0.4 2,489,839 + LRK53_RS11155 0.75 -1.2 2,489,839 + LRK53_RS11155 0.75 -2.1 2,489,839 + LRK53_RS11155 0.75 -2.6 2,489,839 + LRK53_RS11155 0.75 +0.1 2,489,839 + LRK53_RS11155 0.75 -0.5 2,489,839 + LRK53_RS11155 0.75 -0.5 2,489,839 + LRK53_RS11155 0.75 -1.8 2,489,839 + LRK53_RS11155 0.75 -0.5 2,489,839 + LRK53_RS11155 0.75 -0.9 2,489,839 + LRK53_RS11155 0.75 -2.2 2,489,839 + LRK53_RS11155 0.75 -1.5 2,489,839 + LRK53_RS11155 0.75 -2.8 2,489,839 + LRK53_RS11155 0.75 -1.9 2,489,839 + LRK53_RS11155 0.75 -2.5 2,489,839 + LRK53_RS11155 0.75 -2.8 2,489,839 + LRK53_RS11155 0.75 +0.5 2,489,839 + LRK53_RS11155 0.75 +0.5 2,489,839 + LRK53_RS11155 0.75 -3.8 2,489,839 + LRK53_RS11155 0.75 +0.6 2,489,839 + LRK53_RS11155 0.75 +0.1 2,489,839 + LRK53_RS11155 0.75 -1.1 2,489,840 - LRK53_RS11155 0.75 +1.1 2,489,840 - LRK53_RS11155 0.75 -1.7 2,489,840 - LRK53_RS11155 0.75 -0.4 2,489,840 - LRK53_RS11155 0.75 -0.9 2,489,840 - LRK53_RS11155 0.75 +0.1 2,489,840 - LRK53_RS11155 0.75 -1.6 2,489,840 - LRK53_RS11155 0.75 -1.7 2,489,840 - LRK53_RS11155 0.75 -2.6 2,489,840 - LRK53_RS11155 0.75 -1.5 2,489,840 - LRK53_RS11155 0.75 +0.1 2,489,840 - LRK53_RS11155 0.75 -2.9 2,489,840 - LRK53_RS11155 0.75 -2.8 2,489,840 - LRK53_RS11155 0.75 -1.2 2,489,840 - LRK53_RS11155 0.75 -1.4 2,489,840 - LRK53_RS11155 0.75 -0.2 2,489,840 - LRK53_RS11155 0.75 -1.1 2,489,840 - LRK53_RS11155 0.75 -1.9 2,489,840 - LRK53_RS11155 0.75 -0.5 2,489,840 - LRK53_RS11155 0.75 -1.1 2,489,840 - LRK53_RS11155 0.75 -1.2 2,489,840 - LRK53_RS11155 0.75 -0.9 2,489,840 - LRK53_RS11155 0.75 +0.1 2,489,840 - LRK53_RS11155 0.75 -2.8 2,489,840 - LRK53_RS11155 0.75 -3.2 2,489,840 - LRK53_RS11155 0.75 +0.1 2,489,840 - LRK53_RS11155 0.75 +0.7 2,489,840 - LRK53_RS11155 0.75 -2.7 2,489,994 + LRK53_RS11155 0.84 -0.9 2,489,994 + LRK53_RS11155 0.84 -3.7 2,489,994 + LRK53_RS11155 0.84 +1.7 2,489,994 + LRK53_RS11155 0.84 -0.5 2,489,994 + LRK53_RS11155 0.84 -1.2 2,489,995 - LRK53_RS11155 0.84 -1.9 2,489,995 - LRK53_RS11155 0.84 -0.9 2,490,149 + -0.2 2,490,149 + -1.7 2,490,149 + -1.1 2,490,150 - -1.2 2,490,191 + -1.9 2,490,191 + -1.5 2,490,191 + +0.1 2,490,192 - -1.6 2,490,192 - -1.5 2,490,192 - -0.2 2,490,192 - -0.3 2,490,192 - -0.5 2,490,192 - +1.1 2,490,276 - -1.7 2,490,276 - +0.7 2,490,276 - -0.2 2,490,276 - -0.4 2,490,276 - +0.1 2,490,276 - -0.9 2,490,276 - -0.5 2,490,276 - -1.2 2,490,363 + -2.5 2,490,363 + +0.0 2,490,363 + -2.6 2,490,363 + -1.7 2,490,410 + +1.1 2,490,410 + +1.1 2,490,410 + -1.5 2,490,410 + -0.2
Or see this region's nucleotide sequence