Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11155

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11145 and LRK53_RS11150 are separated by 4 nucleotidesLRK53_RS11150 and LRK53_RS11155 are separated by 79 nucleotidesLRK53_RS11155 and LRK53_RS11160 are separated by 165 nucleotides LRK53_RS11145: LRK53_RS11145 - VOC family protein, at 2,487,521 to 2,488,078 _RS11145 LRK53_RS11150: LRK53_RS11150 - tRNA adenosine(34) deaminase TadA, at 2,488,083 to 2,488,571 _RS11150 LRK53_RS11155: LRK53_RS11155 - glutamine-hydrolyzing GMP synthase, at 2,488,651 to 2,490,243 _RS11155 LRK53_RS11160: LRK53_RS11160 - IMP dehydrogenase, at 2,490,409 to 2,491,866 _RS11160 Position (kb) 2488 2489 2490 2491Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.020 kb on + strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.021 kb on - strand, within LRK53_RS11145at 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.593 kb on + strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.594 kb on - strandat 2488.635 kb on + strandat 2488.636 kb on - strandat 2488.636 kb on - strandat 2488.636 kb on - strandat 2488.636 kb on - strandat 2488.636 kb on - strandat 2488.652 kb on + strandat 2488.653 kb on - strandat 2488.695 kb on - strandat 2488.760 kb on + strandat 2488.760 kb on + strandat 2488.760 kb on + strandat 2488.832 kb on + strand, within LRK53_RS11155at 2488.833 kb on - strand, within LRK53_RS11155at 2488.833 kb on - strand, within LRK53_RS11155at 2488.907 kb on + strand, within LRK53_RS11155at 2488.907 kb on + strand, within LRK53_RS11155at 2488.907 kb on + strand, within LRK53_RS11155at 2488.907 kb on + strand, within LRK53_RS11155at 2488.907 kb on + strand, within LRK53_RS11155at 2488.907 kb on + strand, within LRK53_RS11155at 2488.908 kb on - strand, within LRK53_RS11155at 2488.908 kb on - strand, within LRK53_RS11155at 2488.970 kb on + strand, within LRK53_RS11155at 2488.970 kb on + strand, within LRK53_RS11155at 2488.970 kb on + strand, within LRK53_RS11155at 2488.971 kb on - strand, within LRK53_RS11155at 2488.971 kb on - strand, within LRK53_RS11155at 2489.033 kb on + strand, within LRK53_RS11155at 2489.033 kb on + strand, within LRK53_RS11155at 2489.034 kb on - strand, within LRK53_RS11155at 2489.034 kb on - strand, within LRK53_RS11155at 2489.034 kb on - strand, within LRK53_RS11155at 2489.216 kb on + strand, within LRK53_RS11155at 2489.217 kb on - strand, within LRK53_RS11155at 2489.217 kb on - strand, within LRK53_RS11155at 2489.360 kb on + strand, within LRK53_RS11155at 2489.360 kb on + strand, within LRK53_RS11155at 2489.360 kb on + strand, within LRK53_RS11155at 2489.360 kb on + strand, within LRK53_RS11155at 2489.361 kb on - strand, within LRK53_RS11155at 2489.361 kb on - strand, within LRK53_RS11155at 2489.697 kb on + strand, within LRK53_RS11155at 2489.697 kb on + strand, within LRK53_RS11155at 2489.698 kb on - strand, within LRK53_RS11155at 2489.698 kb on - strand, within LRK53_RS11155at 2489.698 kb on - strand, within LRK53_RS11155at 2489.729 kb on + strand, within LRK53_RS11155at 2489.729 kb on + strand, within LRK53_RS11155at 2489.730 kb on - strand, within LRK53_RS11155at 2489.837 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.839 kb on + strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.840 kb on - strand, within LRK53_RS11155at 2489.994 kb on + strand, within LRK53_RS11155at 2489.994 kb on + strand, within LRK53_RS11155at 2489.994 kb on + strand, within LRK53_RS11155at 2489.994 kb on + strand, within LRK53_RS11155at 2489.994 kb on + strand, within LRK53_RS11155at 2489.995 kb on - strand, within LRK53_RS11155at 2489.995 kb on - strand, within LRK53_RS11155at 2490.149 kb on + strandat 2490.149 kb on + strandat 2490.149 kb on + strandat 2490.150 kb on - strandat 2490.191 kb on + strandat 2490.191 kb on + strandat 2490.191 kb on + strandat 2490.192 kb on - strandat 2490.192 kb on - strandat 2490.192 kb on - strandat 2490.192 kb on - strandat 2490.192 kb on - strandat 2490.192 kb on - strandat 2490.276 kb on - strandat 2490.276 kb on - strandat 2490.276 kb on - strandat 2490.276 kb on - strandat 2490.276 kb on - strandat 2490.276 kb on - strandat 2490.276 kb on - strandat 2490.276 kb on - strandat 2490.363 kb on + strandat 2490.363 kb on + strandat 2490.363 kb on + strandat 2490.363 kb on + strandat 2490.410 kb on + strandat 2490.410 kb on + strandat 2490.410 kb on + strandat 2490.410 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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2,488,020 + LRK53_RS11145 0.89 -0.2
2,488,020 + LRK53_RS11145 0.89 -1.1
2,488,020 + LRK53_RS11145 0.89 -1.5
2,488,020 + LRK53_RS11145 0.89 -1.5
2,488,020 + LRK53_RS11145 0.89 -0.8
2,488,020 + LRK53_RS11145 0.89 +0.5
2,488,020 + LRK53_RS11145 0.89 +0.8
2,488,020 + LRK53_RS11145 0.89 -1.2
2,488,020 + LRK53_RS11145 0.89 -0.7
2,488,020 + LRK53_RS11145 0.89 +2.7
2,488,020 + LRK53_RS11145 0.89 -0.5
2,488,020 + LRK53_RS11145 0.89 +0.5
2,488,020 + LRK53_RS11145 0.89 +0.5
2,488,020 + LRK53_RS11145 0.89 -0.1
2,488,021 - LRK53_RS11145 0.90 +2.1
2,488,021 - LRK53_RS11145 0.90 +0.5
2,488,021 - LRK53_RS11145 0.90 -1.3
2,488,021 - LRK53_RS11145 0.90 -1.7
2,488,021 - LRK53_RS11145 0.90 -1.1
2,488,021 - LRK53_RS11145 0.90 +1.7
2,488,021 - LRK53_RS11145 0.90 +2.1
2,488,021 - LRK53_RS11145 0.90 -0.7
2,488,021 - LRK53_RS11145 0.90 -0.4
2,488,021 - LRK53_RS11145 0.90 -0.3
2,488,021 - LRK53_RS11145 0.90 +0.2
2,488,021 - LRK53_RS11145 0.90 -0.2
2,488,593 + +0.1
2,488,593 + -2.2
2,488,593 + -0.5
2,488,593 + -2.1
2,488,593 + +0.9
2,488,593 + +0.6
2,488,593 + -0.7
2,488,593 + -0.7
2,488,593 + +0.3
2,488,593 + -0.7
2,488,593 + -0.1
2,488,593 + -0.3
2,488,593 + -0.9
2,488,593 + +0.7
2,488,593 + -0.8
2,488,593 + -0.5
2,488,593 + -0.1
2,488,594 - -1.0
2,488,594 - -1.2
2,488,594 - -0.3
2,488,594 - +1.1
2,488,594 - +0.7
2,488,594 - -1.1
2,488,594 - -1.5
2,488,594 - +0.0
2,488,594 - -0.0
2,488,594 - -0.3
2,488,594 - -0.3
2,488,594 - -1.5
2,488,594 - +0.9
2,488,594 - -0.4
2,488,635 + -1.2
2,488,636 - -0.6
2,488,636 - -0.9
2,488,636 - +0.8
2,488,636 - +0.5
2,488,636 - -0.5
2,488,652 + +0.1
2,488,653 - -0.4
2,488,695 - -1.9
2,488,760 + -2.4
2,488,760 + +0.1
2,488,760 + -1.9
2,488,832 + LRK53_RS11155 0.11 -3.1
2,488,833 - LRK53_RS11155 0.11 -1.9
2,488,833 - LRK53_RS11155 0.11 +0.7
2,488,907 + LRK53_RS11155 0.16 -2.8
2,488,907 + LRK53_RS11155 0.16 -0.9
2,488,907 + LRK53_RS11155 0.16 -0.5
2,488,907 + LRK53_RS11155 0.16 -1.7
2,488,907 + LRK53_RS11155 0.16 +0.1
2,488,907 + LRK53_RS11155 0.16 -1.7
2,488,908 - LRK53_RS11155 0.16 -1.9
2,488,908 - LRK53_RS11155 0.16 -0.9
2,488,970 + LRK53_RS11155 0.20 -1.5
2,488,970 + LRK53_RS11155 0.20 -0.2
2,488,970 + LRK53_RS11155 0.20 +0.1
2,488,971 - LRK53_RS11155 0.20 -0.5
2,488,971 - LRK53_RS11155 0.20 +0.1
2,489,033 + LRK53_RS11155 0.24 +1.5
2,489,033 + LRK53_RS11155 0.24 -1.9
2,489,034 - LRK53_RS11155 0.24 -0.8
2,489,034 - LRK53_RS11155 0.24 +0.1
2,489,034 - LRK53_RS11155 0.24 -1.5
2,489,216 + LRK53_RS11155 0.35 -1.2
2,489,217 - LRK53_RS11155 0.36 +0.5
2,489,217 - LRK53_RS11155 0.36 -0.5
2,489,360 + LRK53_RS11155 0.45 -0.2
2,489,360 + LRK53_RS11155 0.45 +0.6
2,489,360 + LRK53_RS11155 0.45 -1.2
2,489,360 + LRK53_RS11155 0.45 -1.4
2,489,361 - LRK53_RS11155 0.45 -2.1
2,489,361 - LRK53_RS11155 0.45 -2.0
2,489,697 + LRK53_RS11155 0.66 -1.5
2,489,697 + LRK53_RS11155 0.66 -2.1
2,489,698 - LRK53_RS11155 0.66 -1.2
2,489,698 - LRK53_RS11155 0.66 -1.0
2,489,698 - LRK53_RS11155 0.66 +0.4
2,489,729 + LRK53_RS11155 0.68 -1.9
2,489,729 + LRK53_RS11155 0.68 +1.1
2,489,730 - LRK53_RS11155 0.68 -0.6
2,489,837 + LRK53_RS11155 0.74 -1.9
2,489,839 + LRK53_RS11155 0.75 -0.7
2,489,839 + LRK53_RS11155 0.75 -1.5
2,489,839 + LRK53_RS11155 0.75 +1.1
2,489,839 + LRK53_RS11155 0.75 -2.3
2,489,839 + LRK53_RS11155 0.75 -0.9
2,489,839 + LRK53_RS11155 0.75 -1.4
2,489,839 + LRK53_RS11155 0.75 +0.4
2,489,839 + LRK53_RS11155 0.75 -1.2
2,489,839 + LRK53_RS11155 0.75 -2.1
2,489,839 + LRK53_RS11155 0.75 -2.6
2,489,839 + LRK53_RS11155 0.75 +0.1
2,489,839 + LRK53_RS11155 0.75 -0.5
2,489,839 + LRK53_RS11155 0.75 -0.5
2,489,839 + LRK53_RS11155 0.75 -1.8
2,489,839 + LRK53_RS11155 0.75 -0.5
2,489,839 + LRK53_RS11155 0.75 -0.9
2,489,839 + LRK53_RS11155 0.75 -2.2
2,489,839 + LRK53_RS11155 0.75 -1.5
2,489,839 + LRK53_RS11155 0.75 -2.8
2,489,839 + LRK53_RS11155 0.75 -1.9
2,489,839 + LRK53_RS11155 0.75 -2.5
2,489,839 + LRK53_RS11155 0.75 -2.8
2,489,839 + LRK53_RS11155 0.75 +0.5
2,489,839 + LRK53_RS11155 0.75 +0.5
2,489,839 + LRK53_RS11155 0.75 -3.8
2,489,839 + LRK53_RS11155 0.75 +0.6
2,489,839 + LRK53_RS11155 0.75 +0.1
2,489,839 + LRK53_RS11155 0.75 -1.1
2,489,840 - LRK53_RS11155 0.75 +1.1
2,489,840 - LRK53_RS11155 0.75 -1.7
2,489,840 - LRK53_RS11155 0.75 -0.4
2,489,840 - LRK53_RS11155 0.75 -0.9
2,489,840 - LRK53_RS11155 0.75 +0.1
2,489,840 - LRK53_RS11155 0.75 -1.6
2,489,840 - LRK53_RS11155 0.75 -1.7
2,489,840 - LRK53_RS11155 0.75 -2.6
2,489,840 - LRK53_RS11155 0.75 -1.5
2,489,840 - LRK53_RS11155 0.75 +0.1
2,489,840 - LRK53_RS11155 0.75 -2.9
2,489,840 - LRK53_RS11155 0.75 -2.8
2,489,840 - LRK53_RS11155 0.75 -1.2
2,489,840 - LRK53_RS11155 0.75 -1.4
2,489,840 - LRK53_RS11155 0.75 -0.2
2,489,840 - LRK53_RS11155 0.75 -1.1
2,489,840 - LRK53_RS11155 0.75 -1.9
2,489,840 - LRK53_RS11155 0.75 -0.5
2,489,840 - LRK53_RS11155 0.75 -1.1
2,489,840 - LRK53_RS11155 0.75 -1.2
2,489,840 - LRK53_RS11155 0.75 -0.9
2,489,840 - LRK53_RS11155 0.75 +0.1
2,489,840 - LRK53_RS11155 0.75 -2.8
2,489,840 - LRK53_RS11155 0.75 -3.2
2,489,840 - LRK53_RS11155 0.75 +0.1
2,489,840 - LRK53_RS11155 0.75 +0.7
2,489,840 - LRK53_RS11155 0.75 -2.7
2,489,994 + LRK53_RS11155 0.84 -0.9
2,489,994 + LRK53_RS11155 0.84 -3.7
2,489,994 + LRK53_RS11155 0.84 +1.7
2,489,994 + LRK53_RS11155 0.84 -0.5
2,489,994 + LRK53_RS11155 0.84 -1.2
2,489,995 - LRK53_RS11155 0.84 -1.9
2,489,995 - LRK53_RS11155 0.84 -0.9
2,490,149 + -0.2
2,490,149 + -1.7
2,490,149 + -1.1
2,490,150 - -1.2
2,490,191 + -1.9
2,490,191 + -1.5
2,490,191 + +0.1
2,490,192 - -1.6
2,490,192 - -1.5
2,490,192 - -0.2
2,490,192 - -0.3
2,490,192 - -0.5
2,490,192 - +1.1
2,490,276 - -1.7
2,490,276 - +0.7
2,490,276 - -0.2
2,490,276 - -0.4
2,490,276 - +0.1
2,490,276 - -0.9
2,490,276 - -0.5
2,490,276 - -1.2
2,490,363 + -2.5
2,490,363 + +0.0
2,490,363 + -2.6
2,490,363 + -1.7
2,490,410 + +1.1
2,490,410 + +1.1
2,490,410 + -1.5
2,490,410 + -0.2

Or see this region's nucleotide sequence