Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09760

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09755 and LRK53_RS09760 overlap by 4 nucleotidesLRK53_RS09760 and LRK53_RS09765 are separated by 53 nucleotides LRK53_RS09755: LRK53_RS09755 - prephenate dehydratase, at 2,193,736 to 2,194,824 _RS09755 LRK53_RS09760: LRK53_RS09760 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,194,821 to 2,196,131 _RS09760 LRK53_RS09765: LRK53_RS09765 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,196,185 to 2,196,964 _RS09765 Position (kb) 2194 2195 2196 2197Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2193.851 kb on + strand, within LRK53_RS09755at 2193.852 kb on - strand, within LRK53_RS09755at 2193.852 kb on - strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.880 kb on + strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.881 kb on - strand, within LRK53_RS09755at 2193.883 kb on + strand, within LRK53_RS09755at 2193.883 kb on + strand, within LRK53_RS09755at 2193.883 kb on + strand, within LRK53_RS09755at 2193.883 kb on + strand, within LRK53_RS09755at 2193.883 kb on + strand, within LRK53_RS09755at 2193.884 kb on - strand, within LRK53_RS09755at 2193.884 kb on - strand, within LRK53_RS09755at 2194.088 kb on - strand, within LRK53_RS09755at 2194.088 kb on - strand, within LRK53_RS09755at 2194.089 kb on + strand, within LRK53_RS09755at 2194.089 kb on + strand, within LRK53_RS09755at 2194.089 kb on + strand, within LRK53_RS09755at 2194.089 kb on + strand, within LRK53_RS09755at 2194.089 kb on + strand, within LRK53_RS09755at 2194.090 kb on - strand, within LRK53_RS09755at 2194.090 kb on - strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.309 kb on + strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.310 kb on - strand, within LRK53_RS09755at 2194.469 kb on - strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.572 kb on + strand, within LRK53_RS09755at 2194.573 kb on - strand, within LRK53_RS09755at 2194.573 kb on - strand, within LRK53_RS09755at 2194.573 kb on - strand, within LRK53_RS09755at 2194.573 kb on - strand, within LRK53_RS09755at 2194.573 kb on - strand, within LRK53_RS09755at 2194.573 kb on - strand, within LRK53_RS09755at 2194.573 kb on - strand, within LRK53_RS09755at 2194.573 kb on - strand, within LRK53_RS09755at 2194.615 kb on + strand, within LRK53_RS09755at 2194.615 kb on + strand, within LRK53_RS09755at 2194.615 kb on + strand, within LRK53_RS09755at 2194.615 kb on + strand, within LRK53_RS09755at 2194.615 kb on + strand, within LRK53_RS09755at 2194.615 kb on + strand, within LRK53_RS09755at 2194.616 kb on - strand, within LRK53_RS09755at 2194.616 kb on - strand, within LRK53_RS09755at 2194.616 kb on - strand, within LRK53_RS09755at 2194.616 kb on - strand, within LRK53_RS09755at 2194.616 kb on - strand, within LRK53_RS09755at 2194.616 kb on - strand, within LRK53_RS09755at 2194.699 kb on + strand, within LRK53_RS09755at 2194.699 kb on + strand, within LRK53_RS09755at 2194.699 kb on + strand, within LRK53_RS09755at 2194.700 kb on - strand, within LRK53_RS09755at 2194.700 kb on - strand, within LRK53_RS09755at 2194.700 kb on - strand, within LRK53_RS09755at 2194.700 kb on - strand, within LRK53_RS09755at 2194.700 kb on - strand, within LRK53_RS09755at 2194.728 kb on + strandat 2194.770 kb on + strandat 2194.770 kb on + strandat 2194.770 kb on + strandat 2194.770 kb on + strandat 2194.770 kb on + strandat 2194.771 kb on - strandat 2194.771 kb on - strandat 2194.771 kb on - strandat 2195.047 kb on + strand, within LRK53_RS09760at 2195.047 kb on + strand, within LRK53_RS09760at 2195.047 kb on + strand, within LRK53_RS09760at 2195.048 kb on - strand, within LRK53_RS09760at 2195.310 kb on + strand, within LRK53_RS09760at 2195.310 kb on + strand, within LRK53_RS09760at 2195.311 kb on - strand, within LRK53_RS09760at 2195.367 kb on + strand, within LRK53_RS09760at 2195.367 kb on + strand, within LRK53_RS09760at 2195.367 kb on + strand, within LRK53_RS09760at 2195.367 kb on + strand, within LRK53_RS09760at 2195.367 kb on + strand, within LRK53_RS09760at 2195.367 kb on + strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.368 kb on - strand, within LRK53_RS09760at 2195.415 kb on + strand, within LRK53_RS09760at 2195.416 kb on - strand, within LRK53_RS09760at 2195.570 kb on - strand, within LRK53_RS09760at 2196.155 kb on + strandat 2196.155 kb on + strandat 2196.156 kb on - strandat 2197.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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2,193,851 + LRK53_RS09755 0.11 -1.5
2,193,852 - LRK53_RS09755 0.11 -0.5
2,193,852 - LRK53_RS09755 0.11 -0.5
2,193,880 + LRK53_RS09755 0.13 -1.7
2,193,880 + LRK53_RS09755 0.13 -0.3
2,193,880 + LRK53_RS09755 0.13 -1.8
2,193,880 + LRK53_RS09755 0.13 -0.5
2,193,880 + LRK53_RS09755 0.13 -1.0
2,193,880 + LRK53_RS09755 0.13 -0.9
2,193,880 + LRK53_RS09755 0.13 -0.1
2,193,880 + LRK53_RS09755 0.13 -0.5
2,193,880 + LRK53_RS09755 0.13 -0.0
2,193,881 - LRK53_RS09755 0.13 +0.9
2,193,881 - LRK53_RS09755 0.13 +0.7
2,193,881 - LRK53_RS09755 0.13 -0.6
2,193,881 - LRK53_RS09755 0.13 -0.7
2,193,881 - LRK53_RS09755 0.13 +0.5
2,193,881 - LRK53_RS09755 0.13 -1.9
2,193,881 - LRK53_RS09755 0.13 -2.3
2,193,881 - LRK53_RS09755 0.13 +1.9
2,193,881 - LRK53_RS09755 0.13 -0.2
2,193,883 + LRK53_RS09755 0.13 -0.5
2,193,883 + LRK53_RS09755 0.13 +0.4
2,193,883 + LRK53_RS09755 0.13 +0.1
2,193,883 + LRK53_RS09755 0.13 -0.3
2,193,883 + LRK53_RS09755 0.13 -0.6
2,193,884 - LRK53_RS09755 0.14 +0.7
2,193,884 - LRK53_RS09755 0.14 +1.7
2,194,088 - LRK53_RS09755 0.32 -0.5
2,194,088 - LRK53_RS09755 0.32 +0.9
2,194,089 + LRK53_RS09755 0.32 +0.1
2,194,089 + LRK53_RS09755 0.32 -0.8
2,194,089 + LRK53_RS09755 0.32 +1.1
2,194,089 + LRK53_RS09755 0.32 -0.6
2,194,089 + LRK53_RS09755 0.32 -0.2
2,194,090 - LRK53_RS09755 0.33 +0.1
2,194,090 - LRK53_RS09755 0.33 -2.0
2,194,309 + LRK53_RS09755 0.53 -1.9
2,194,309 + LRK53_RS09755 0.53 -0.5
2,194,309 + LRK53_RS09755 0.53 +0.8
2,194,309 + LRK53_RS09755 0.53 -1.2
2,194,309 + LRK53_RS09755 0.53 -0.1
2,194,309 + LRK53_RS09755 0.53 -1.5
2,194,309 + LRK53_RS09755 0.53 -0.9
2,194,309 + LRK53_RS09755 0.53 -1.1
2,194,309 + LRK53_RS09755 0.53 +1.1
2,194,309 + LRK53_RS09755 0.53 -0.4
2,194,309 + LRK53_RS09755 0.53 +1.1
2,194,309 + LRK53_RS09755 0.53 -0.3
2,194,309 + LRK53_RS09755 0.53 -0.9
2,194,309 + LRK53_RS09755 0.53 -1.2
2,194,309 + LRK53_RS09755 0.53 -0.5
2,194,309 + LRK53_RS09755 0.53 -0.5
2,194,309 + LRK53_RS09755 0.53 -0.7
2,194,309 + LRK53_RS09755 0.53 -1.1
2,194,309 + LRK53_RS09755 0.53 -0.3
2,194,309 + LRK53_RS09755 0.53 -1.7
2,194,309 + LRK53_RS09755 0.53 -0.9
2,194,309 + LRK53_RS09755 0.53 -2.8
2,194,309 + LRK53_RS09755 0.53 +0.1
2,194,309 + LRK53_RS09755 0.53 -1.2
2,194,309 + LRK53_RS09755 0.53 +1.1
2,194,309 + LRK53_RS09755 0.53 -0.5
2,194,310 - LRK53_RS09755 0.53 -1.9
2,194,310 - LRK53_RS09755 0.53 -0.9
2,194,310 - LRK53_RS09755 0.53 +0.0
2,194,310 - LRK53_RS09755 0.53 -0.7
2,194,310 - LRK53_RS09755 0.53 -1.1
2,194,310 - LRK53_RS09755 0.53 +0.2
2,194,310 - LRK53_RS09755 0.53 +1.1
2,194,310 - LRK53_RS09755 0.53 +0.1
2,194,310 - LRK53_RS09755 0.53 +1.7
2,194,310 - LRK53_RS09755 0.53 -2.1
2,194,310 - LRK53_RS09755 0.53 -0.5
2,194,310 - LRK53_RS09755 0.53 -1.2
2,194,310 - LRK53_RS09755 0.53 -3.1
2,194,310 - LRK53_RS09755 0.53 -0.5
2,194,310 - LRK53_RS09755 0.53 -1.7
2,194,310 - LRK53_RS09755 0.53 -1.1
2,194,310 - LRK53_RS09755 0.53 +2.1
2,194,310 - LRK53_RS09755 0.53 -0.9
2,194,310 - LRK53_RS09755 0.53 -1.6
2,194,310 - LRK53_RS09755 0.53 -1.9
2,194,310 - LRK53_RS09755 0.53 -1.2
2,194,310 - LRK53_RS09755 0.53 -0.9
2,194,310 - LRK53_RS09755 0.53 -0.5
2,194,469 - LRK53_RS09755 0.67 -1.5
2,194,572 + LRK53_RS09755 0.77 +1.1
2,194,572 + LRK53_RS09755 0.77 -1.1
2,194,572 + LRK53_RS09755 0.77 -2.1
2,194,572 + LRK53_RS09755 0.77 -1.4
2,194,572 + LRK53_RS09755 0.77 -1.9
2,194,572 + LRK53_RS09755 0.77 -0.3
2,194,572 + LRK53_RS09755 0.77 -1.1
2,194,572 + LRK53_RS09755 0.77 -0.5
2,194,572 + LRK53_RS09755 0.77 +0.6
2,194,573 - LRK53_RS09755 0.77 -0.5
2,194,573 - LRK53_RS09755 0.77 -0.5
2,194,573 - LRK53_RS09755 0.77 -1.4
2,194,573 - LRK53_RS09755 0.77 -0.9
2,194,573 - LRK53_RS09755 0.77 +0.1
2,194,573 - LRK53_RS09755 0.77 -1.5
2,194,573 - LRK53_RS09755 0.77 +1.1
2,194,573 - LRK53_RS09755 0.77 -0.8
2,194,615 + LRK53_RS09755 0.81 +0.0
2,194,615 + LRK53_RS09755 0.81 -0.0
2,194,615 + LRK53_RS09755 0.81 -0.9
2,194,615 + LRK53_RS09755 0.81 -0.9
2,194,615 + LRK53_RS09755 0.81 -0.1
2,194,615 + LRK53_RS09755 0.81 -1.2
2,194,616 - LRK53_RS09755 0.81 +2.1
2,194,616 - LRK53_RS09755 0.81 -0.5
2,194,616 - LRK53_RS09755 0.81 -0.9
2,194,616 - LRK53_RS09755 0.81 +1.1
2,194,616 - LRK53_RS09755 0.81 +1.1
2,194,616 - LRK53_RS09755 0.81 +1.1
2,194,699 + LRK53_RS09755 0.88 -0.6
2,194,699 + LRK53_RS09755 0.88 -1.0
2,194,699 + LRK53_RS09755 0.88 -0.3
2,194,700 - LRK53_RS09755 0.89 -1.9
2,194,700 - LRK53_RS09755 0.89 +0.5
2,194,700 - LRK53_RS09755 0.89 -0.3
2,194,700 - LRK53_RS09755 0.89 -0.9
2,194,700 - LRK53_RS09755 0.89 +0.1
2,194,728 + -0.5
2,194,770 + +0.4
2,194,770 + -0.2
2,194,770 + -0.6
2,194,770 + -1.5
2,194,770 + +0.8
2,194,771 - +0.4
2,194,771 - +0.1
2,194,771 - -0.6
2,195,047 + LRK53_RS09760 0.17 -1.5
2,195,047 + LRK53_RS09760 0.17 -1.9
2,195,047 + LRK53_RS09760 0.17 -1.1
2,195,048 - LRK53_RS09760 0.17 -2.2
2,195,310 + LRK53_RS09760 0.37 -1.9
2,195,310 + LRK53_RS09760 0.37 -0.2
2,195,311 - LRK53_RS09760 0.37 -2.4
2,195,367 + LRK53_RS09760 0.42 -2.1
2,195,367 + LRK53_RS09760 0.42 -1.7
2,195,367 + LRK53_RS09760 0.42 +0.1
2,195,367 + LRK53_RS09760 0.42 -1.2
2,195,367 + LRK53_RS09760 0.42 +0.1
2,195,367 + LRK53_RS09760 0.42 -0.5
2,195,368 - LRK53_RS09760 0.42 -0.6
2,195,368 - LRK53_RS09760 0.42 -0.8
2,195,368 - LRK53_RS09760 0.42 -0.5
2,195,368 - LRK53_RS09760 0.42 -1.0
2,195,368 - LRK53_RS09760 0.42 -0.2
2,195,368 - LRK53_RS09760 0.42 -1.3
2,195,368 - LRK53_RS09760 0.42 -0.5
2,195,368 - LRK53_RS09760 0.42 -1.5
2,195,368 - LRK53_RS09760 0.42 +0.1
2,195,415 + LRK53_RS09760 0.45 -2.2
2,195,416 - LRK53_RS09760 0.45 -1.2
2,195,570 - LRK53_RS09760 0.57 -1.7
2,196,155 + -1.9
2,196,155 + -1.3
2,196,156 - +1.7
2,197,039 - -1.0

Or see this region's nucleotide sequence