Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09755 and LRK53_RS09760 overlap by 4 nucleotides LRK53_RS09760 and LRK53_RS09765 are separated by 53 nucleotides
LRK53_RS09755: LRK53_RS09755 - prephenate dehydratase, at 2,193,736 to 2,194,824
_RS09755
LRK53_RS09760: LRK53_RS09760 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,194,821 to 2,196,131
_RS09760
LRK53_RS09765: LRK53_RS09765 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 2,196,185 to 2,196,964
_RS09765
Position (kb)
2194
2195
2196
2197 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2193.851 kb on + strand, within LRK53_RS09755 at 2193.852 kb on - strand, within LRK53_RS09755 at 2193.852 kb on - strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.880 kb on + strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.881 kb on - strand, within LRK53_RS09755 at 2193.883 kb on + strand, within LRK53_RS09755 at 2193.883 kb on + strand, within LRK53_RS09755 at 2193.883 kb on + strand, within LRK53_RS09755 at 2193.883 kb on + strand, within LRK53_RS09755 at 2193.883 kb on + strand, within LRK53_RS09755 at 2193.884 kb on - strand, within LRK53_RS09755 at 2193.884 kb on - strand, within LRK53_RS09755 at 2194.088 kb on - strand, within LRK53_RS09755 at 2194.088 kb on - strand, within LRK53_RS09755 at 2194.089 kb on + strand, within LRK53_RS09755 at 2194.089 kb on + strand, within LRK53_RS09755 at 2194.089 kb on + strand, within LRK53_RS09755 at 2194.089 kb on + strand, within LRK53_RS09755 at 2194.089 kb on + strand, within LRK53_RS09755 at 2194.090 kb on - strand, within LRK53_RS09755 at 2194.090 kb on - strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.309 kb on + strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.310 kb on - strand, within LRK53_RS09755 at 2194.469 kb on - strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.572 kb on + strand, within LRK53_RS09755 at 2194.573 kb on - strand, within LRK53_RS09755 at 2194.573 kb on - strand, within LRK53_RS09755 at 2194.573 kb on - strand, within LRK53_RS09755 at 2194.573 kb on - strand, within LRK53_RS09755 at 2194.573 kb on - strand, within LRK53_RS09755 at 2194.573 kb on - strand, within LRK53_RS09755 at 2194.573 kb on - strand, within LRK53_RS09755 at 2194.573 kb on - strand, within LRK53_RS09755 at 2194.615 kb on + strand, within LRK53_RS09755 at 2194.615 kb on + strand, within LRK53_RS09755 at 2194.615 kb on + strand, within LRK53_RS09755 at 2194.615 kb on + strand, within LRK53_RS09755 at 2194.615 kb on + strand, within LRK53_RS09755 at 2194.615 kb on + strand, within LRK53_RS09755 at 2194.616 kb on - strand, within LRK53_RS09755 at 2194.616 kb on - strand, within LRK53_RS09755 at 2194.616 kb on - strand, within LRK53_RS09755 at 2194.616 kb on - strand, within LRK53_RS09755 at 2194.616 kb on - strand, within LRK53_RS09755 at 2194.616 kb on - strand, within LRK53_RS09755 at 2194.699 kb on + strand, within LRK53_RS09755 at 2194.699 kb on + strand, within LRK53_RS09755 at 2194.699 kb on + strand, within LRK53_RS09755 at 2194.700 kb on - strand, within LRK53_RS09755 at 2194.700 kb on - strand, within LRK53_RS09755 at 2194.700 kb on - strand, within LRK53_RS09755 at 2194.700 kb on - strand, within LRK53_RS09755 at 2194.700 kb on - strand, within LRK53_RS09755 at 2194.728 kb on + strand at 2194.770 kb on + strand at 2194.770 kb on + strand at 2194.770 kb on + strand at 2194.770 kb on + strand at 2194.770 kb on + strand at 2194.771 kb on - strand at 2194.771 kb on - strand at 2194.771 kb on - strand at 2195.047 kb on + strand, within LRK53_RS09760 at 2195.047 kb on + strand, within LRK53_RS09760 at 2195.047 kb on + strand, within LRK53_RS09760 at 2195.048 kb on - strand, within LRK53_RS09760 at 2195.310 kb on + strand, within LRK53_RS09760 at 2195.310 kb on + strand, within LRK53_RS09760 at 2195.311 kb on - strand, within LRK53_RS09760 at 2195.367 kb on + strand, within LRK53_RS09760 at 2195.367 kb on + strand, within LRK53_RS09760 at 2195.367 kb on + strand, within LRK53_RS09760 at 2195.367 kb on + strand, within LRK53_RS09760 at 2195.367 kb on + strand, within LRK53_RS09760 at 2195.367 kb on + strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.368 kb on - strand, within LRK53_RS09760 at 2195.415 kb on + strand, within LRK53_RS09760 at 2195.416 kb on - strand, within LRK53_RS09760 at 2195.570 kb on - strand, within LRK53_RS09760 at 2196.155 kb on + strand at 2196.155 kb on + strand at 2196.156 kb on - strand at 2197.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 2,193,851 + LRK53_RS09755 0.11 -1.5 2,193,852 - LRK53_RS09755 0.11 -0.5 2,193,852 - LRK53_RS09755 0.11 -0.5 2,193,880 + LRK53_RS09755 0.13 -1.7 2,193,880 + LRK53_RS09755 0.13 -0.3 2,193,880 + LRK53_RS09755 0.13 -1.8 2,193,880 + LRK53_RS09755 0.13 -0.5 2,193,880 + LRK53_RS09755 0.13 -1.0 2,193,880 + LRK53_RS09755 0.13 -0.9 2,193,880 + LRK53_RS09755 0.13 -0.1 2,193,880 + LRK53_RS09755 0.13 -0.5 2,193,880 + LRK53_RS09755 0.13 -0.0 2,193,881 - LRK53_RS09755 0.13 +0.9 2,193,881 - LRK53_RS09755 0.13 +0.7 2,193,881 - LRK53_RS09755 0.13 -0.6 2,193,881 - LRK53_RS09755 0.13 -0.7 2,193,881 - LRK53_RS09755 0.13 +0.5 2,193,881 - LRK53_RS09755 0.13 -1.9 2,193,881 - LRK53_RS09755 0.13 -2.3 2,193,881 - LRK53_RS09755 0.13 +1.9 2,193,881 - LRK53_RS09755 0.13 -0.2 2,193,883 + LRK53_RS09755 0.13 -0.5 2,193,883 + LRK53_RS09755 0.13 +0.4 2,193,883 + LRK53_RS09755 0.13 +0.1 2,193,883 + LRK53_RS09755 0.13 -0.3 2,193,883 + LRK53_RS09755 0.13 -0.6 2,193,884 - LRK53_RS09755 0.14 +0.7 2,193,884 - LRK53_RS09755 0.14 +1.7 2,194,088 - LRK53_RS09755 0.32 -0.5 2,194,088 - LRK53_RS09755 0.32 +0.9 2,194,089 + LRK53_RS09755 0.32 +0.1 2,194,089 + LRK53_RS09755 0.32 -0.8 2,194,089 + LRK53_RS09755 0.32 +1.1 2,194,089 + LRK53_RS09755 0.32 -0.6 2,194,089 + LRK53_RS09755 0.32 -0.2 2,194,090 - LRK53_RS09755 0.33 +0.1 2,194,090 - LRK53_RS09755 0.33 -2.0 2,194,309 + LRK53_RS09755 0.53 -1.9 2,194,309 + LRK53_RS09755 0.53 -0.5 2,194,309 + LRK53_RS09755 0.53 +0.8 2,194,309 + LRK53_RS09755 0.53 -1.2 2,194,309 + LRK53_RS09755 0.53 -0.1 2,194,309 + LRK53_RS09755 0.53 -1.5 2,194,309 + LRK53_RS09755 0.53 -0.9 2,194,309 + LRK53_RS09755 0.53 -1.1 2,194,309 + LRK53_RS09755 0.53 +1.1 2,194,309 + LRK53_RS09755 0.53 -0.4 2,194,309 + LRK53_RS09755 0.53 +1.1 2,194,309 + LRK53_RS09755 0.53 -0.3 2,194,309 + LRK53_RS09755 0.53 -0.9 2,194,309 + LRK53_RS09755 0.53 -1.2 2,194,309 + LRK53_RS09755 0.53 -0.5 2,194,309 + LRK53_RS09755 0.53 -0.5 2,194,309 + LRK53_RS09755 0.53 -0.7 2,194,309 + LRK53_RS09755 0.53 -1.1 2,194,309 + LRK53_RS09755 0.53 -0.3 2,194,309 + LRK53_RS09755 0.53 -1.7 2,194,309 + LRK53_RS09755 0.53 -0.9 2,194,309 + LRK53_RS09755 0.53 -2.8 2,194,309 + LRK53_RS09755 0.53 +0.1 2,194,309 + LRK53_RS09755 0.53 -1.2 2,194,309 + LRK53_RS09755 0.53 +1.1 2,194,309 + LRK53_RS09755 0.53 -0.5 2,194,310 - LRK53_RS09755 0.53 -1.9 2,194,310 - LRK53_RS09755 0.53 -0.9 2,194,310 - LRK53_RS09755 0.53 +0.0 2,194,310 - LRK53_RS09755 0.53 -0.7 2,194,310 - LRK53_RS09755 0.53 -1.1 2,194,310 - LRK53_RS09755 0.53 +0.2 2,194,310 - LRK53_RS09755 0.53 +1.1 2,194,310 - LRK53_RS09755 0.53 +0.1 2,194,310 - LRK53_RS09755 0.53 +1.7 2,194,310 - LRK53_RS09755 0.53 -2.1 2,194,310 - LRK53_RS09755 0.53 -0.5 2,194,310 - LRK53_RS09755 0.53 -1.2 2,194,310 - LRK53_RS09755 0.53 -3.1 2,194,310 - LRK53_RS09755 0.53 -0.5 2,194,310 - LRK53_RS09755 0.53 -1.7 2,194,310 - LRK53_RS09755 0.53 -1.1 2,194,310 - LRK53_RS09755 0.53 +2.1 2,194,310 - LRK53_RS09755 0.53 -0.9 2,194,310 - LRK53_RS09755 0.53 -1.6 2,194,310 - LRK53_RS09755 0.53 -1.9 2,194,310 - LRK53_RS09755 0.53 -1.2 2,194,310 - LRK53_RS09755 0.53 -0.9 2,194,310 - LRK53_RS09755 0.53 -0.5 2,194,469 - LRK53_RS09755 0.67 -1.5 2,194,572 + LRK53_RS09755 0.77 +1.1 2,194,572 + LRK53_RS09755 0.77 -1.1 2,194,572 + LRK53_RS09755 0.77 -2.1 2,194,572 + LRK53_RS09755 0.77 -1.4 2,194,572 + LRK53_RS09755 0.77 -1.9 2,194,572 + LRK53_RS09755 0.77 -0.3 2,194,572 + LRK53_RS09755 0.77 -1.1 2,194,572 + LRK53_RS09755 0.77 -0.5 2,194,572 + LRK53_RS09755 0.77 +0.6 2,194,573 - LRK53_RS09755 0.77 -0.5 2,194,573 - LRK53_RS09755 0.77 -0.5 2,194,573 - LRK53_RS09755 0.77 -1.4 2,194,573 - LRK53_RS09755 0.77 -0.9 2,194,573 - LRK53_RS09755 0.77 +0.1 2,194,573 - LRK53_RS09755 0.77 -1.5 2,194,573 - LRK53_RS09755 0.77 +1.1 2,194,573 - LRK53_RS09755 0.77 -0.8 2,194,615 + LRK53_RS09755 0.81 +0.0 2,194,615 + LRK53_RS09755 0.81 -0.0 2,194,615 + LRK53_RS09755 0.81 -0.9 2,194,615 + LRK53_RS09755 0.81 -0.9 2,194,615 + LRK53_RS09755 0.81 -0.1 2,194,615 + LRK53_RS09755 0.81 -1.2 2,194,616 - LRK53_RS09755 0.81 +2.1 2,194,616 - LRK53_RS09755 0.81 -0.5 2,194,616 - LRK53_RS09755 0.81 -0.9 2,194,616 - LRK53_RS09755 0.81 +1.1 2,194,616 - LRK53_RS09755 0.81 +1.1 2,194,616 - LRK53_RS09755 0.81 +1.1 2,194,699 + LRK53_RS09755 0.88 -0.6 2,194,699 + LRK53_RS09755 0.88 -1.0 2,194,699 + LRK53_RS09755 0.88 -0.3 2,194,700 - LRK53_RS09755 0.89 -1.9 2,194,700 - LRK53_RS09755 0.89 +0.5 2,194,700 - LRK53_RS09755 0.89 -0.3 2,194,700 - LRK53_RS09755 0.89 -0.9 2,194,700 - LRK53_RS09755 0.89 +0.1 2,194,728 + -0.5 2,194,770 + +0.4 2,194,770 + -0.2 2,194,770 + -0.6 2,194,770 + -1.5 2,194,770 + +0.8 2,194,771 - +0.4 2,194,771 - +0.1 2,194,771 - -0.6 2,195,047 + LRK53_RS09760 0.17 -1.5 2,195,047 + LRK53_RS09760 0.17 -1.9 2,195,047 + LRK53_RS09760 0.17 -1.1 2,195,048 - LRK53_RS09760 0.17 -2.2 2,195,310 + LRK53_RS09760 0.37 -1.9 2,195,310 + LRK53_RS09760 0.37 -0.2 2,195,311 - LRK53_RS09760 0.37 -2.4 2,195,367 + LRK53_RS09760 0.42 -2.1 2,195,367 + LRK53_RS09760 0.42 -1.7 2,195,367 + LRK53_RS09760 0.42 +0.1 2,195,367 + LRK53_RS09760 0.42 -1.2 2,195,367 + LRK53_RS09760 0.42 +0.1 2,195,367 + LRK53_RS09760 0.42 -0.5 2,195,368 - LRK53_RS09760 0.42 -0.6 2,195,368 - LRK53_RS09760 0.42 -0.8 2,195,368 - LRK53_RS09760 0.42 -0.5 2,195,368 - LRK53_RS09760 0.42 -1.0 2,195,368 - LRK53_RS09760 0.42 -0.2 2,195,368 - LRK53_RS09760 0.42 -1.3 2,195,368 - LRK53_RS09760 0.42 -0.5 2,195,368 - LRK53_RS09760 0.42 -1.5 2,195,368 - LRK53_RS09760 0.42 +0.1 2,195,415 + LRK53_RS09760 0.45 -2.2 2,195,416 - LRK53_RS09760 0.45 -1.2 2,195,570 - LRK53_RS09760 0.57 -1.7 2,196,155 + -1.9 2,196,155 + -1.3 2,196,156 - +1.7 2,197,039 - -1.0
Or see this region's nucleotide sequence