Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09570

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09565 and LRK53_RS09570 are separated by 158 nucleotidesLRK53_RS09570 and LRK53_RS09575 are separated by 87 nucleotides LRK53_RS09565: LRK53_RS09565 - alanine racemase, at 2,151,393 to 2,152,466 _RS09565 LRK53_RS09570: LRK53_RS09570 - HD domain-containing protein, at 2,152,625 to 2,153,266 _RS09570 LRK53_RS09575: LRK53_RS09575 - hypothetical protein, at 2,153,354 to 2,154,403 _RS09575 Position (kb) 2152 2153 2154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2152.033 kb on - strand, within LRK53_RS09565at 2152.452 kb on + strandat 2152.452 kb on + strandat 2152.452 kb on + strandat 2152.452 kb on + strandat 2152.452 kb on + strandat 2152.452 kb on + strandat 2152.453 kb on - strandat 2152.453 kb on - strandat 2152.453 kb on - strandat 2152.453 kb on - strandat 2152.453 kb on - strandat 2152.453 kb on - strandat 2152.453 kb on - strandat 2152.453 kb on - strandat 2152.522 kb on + strandat 2152.522 kb on + strandat 2152.522 kb on + strandat 2152.522 kb on + strandat 2152.522 kb on + strandat 2152.522 kb on + strandat 2152.523 kb on - strandat 2152.523 kb on - strandat 2152.523 kb on - strandat 2152.523 kb on - strandat 2152.523 kb on - strandat 2152.665 kb on - strandat 2152.684 kb on + strandat 2152.715 kb on + strand, within LRK53_RS09570at 2152.715 kb on + strand, within LRK53_RS09570at 2152.715 kb on + strand, within LRK53_RS09570at 2152.715 kb on + strand, within LRK53_RS09570at 2152.715 kb on + strand, within LRK53_RS09570at 2152.716 kb on - strand, within LRK53_RS09570at 2152.721 kb on + strand, within LRK53_RS09570at 2152.721 kb on + strand, within LRK53_RS09570at 2152.722 kb on - strand, within LRK53_RS09570at 2152.968 kb on - strand, within LRK53_RS09570at 2153.020 kb on + strand, within LRK53_RS09570at 2153.126 kb on + strand, within LRK53_RS09570at 2153.126 kb on + strand, within LRK53_RS09570at 2153.127 kb on - strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.129 kb on + strand, within LRK53_RS09570at 2153.130 kb on - strand, within LRK53_RS09570at 2153.130 kb on - strand, within LRK53_RS09570at 2153.130 kb on - strand, within LRK53_RS09570at 2153.339 kb on + strandat 2153.340 kb on - strandat 2153.340 kb on - strandat 2153.650 kb on + strand, within LRK53_RS09575at 2153.651 kb on - strand, within LRK53_RS09575at 2153.651 kb on - strand, within LRK53_RS09575at 2153.651 kb on - strand, within LRK53_RS09575at 2153.749 kb on + strand, within LRK53_RS09575at 2153.749 kb on + strand, within LRK53_RS09575at 2153.750 kb on - strand, within LRK53_RS09575at 2153.750 kb on - strand, within LRK53_RS09575

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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2,152,033 - LRK53_RS09565 0.60 -2.2
2,152,452 + -0.2
2,152,452 + -1.4
2,152,452 + +1.1
2,152,452 + -0.0
2,152,452 + -2.4
2,152,452 + -0.8
2,152,453 - -1.5
2,152,453 - -0.9
2,152,453 - -3.2
2,152,453 - -1.7
2,152,453 - -1.3
2,152,453 - -3.1
2,152,453 - +1.0
2,152,453 - -2.6
2,152,522 + +1.4
2,152,522 + -0.0
2,152,522 + +0.3
2,152,522 + +0.0
2,152,522 + -1.2
2,152,522 + +1.0
2,152,523 - -0.5
2,152,523 - -0.6
2,152,523 - -2.5
2,152,523 - -0.3
2,152,523 - -0.0
2,152,665 - -0.3
2,152,684 + -0.5
2,152,715 + LRK53_RS09570 0.14 -0.8
2,152,715 + LRK53_RS09570 0.14 -2.4
2,152,715 + LRK53_RS09570 0.14 +0.2
2,152,715 + LRK53_RS09570 0.14 +0.1
2,152,715 + LRK53_RS09570 0.14 +1.0
2,152,716 - LRK53_RS09570 0.14 -0.6
2,152,721 + LRK53_RS09570 0.15 -1.6
2,152,721 + LRK53_RS09570 0.15 -1.5
2,152,722 - LRK53_RS09570 0.15 -0.6
2,152,968 - LRK53_RS09570 0.53 +0.4
2,153,020 + LRK53_RS09570 0.62 +1.3
2,153,126 + LRK53_RS09570 0.78 -2.6
2,153,126 + LRK53_RS09570 0.78 +1.0
2,153,127 - LRK53_RS09570 0.78 -0.7
2,153,129 + LRK53_RS09570 0.79 +2.3
2,153,129 + LRK53_RS09570 0.79 +1.5
2,153,129 + LRK53_RS09570 0.79 +1.5
2,153,129 + LRK53_RS09570 0.79 +0.1
2,153,129 + LRK53_RS09570 0.79 +2.5
2,153,129 + LRK53_RS09570 0.79 -1.8
2,153,129 + LRK53_RS09570 0.79 +2.0
2,153,129 + LRK53_RS09570 0.79 +1.1
2,153,129 + LRK53_RS09570 0.79 +2.0
2,153,129 + LRK53_RS09570 0.79 -0.4
2,153,129 + LRK53_RS09570 0.79 -0.6
2,153,130 - LRK53_RS09570 0.79 +1.0
2,153,130 - LRK53_RS09570 0.79 +1.5
2,153,130 - LRK53_RS09570 0.79 -2.4
2,153,339 + -1.0
2,153,340 - -1.6
2,153,340 - -0.0
2,153,650 + LRK53_RS09575 0.28 -0.6
2,153,651 - LRK53_RS09575 0.28 +1.0
2,153,651 - LRK53_RS09575 0.28 -1.6
2,153,651 - LRK53_RS09575 0.28 -0.2
2,153,749 + LRK53_RS09575 0.38 -1.1
2,153,749 + LRK53_RS09575 0.38 -0.8
2,153,750 - LRK53_RS09575 0.38 +2.5
2,153,750 - LRK53_RS09575 0.38 -0.6

Or see this region's nucleotide sequence