Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09565 and LRK53_RS09570 are separated by 158 nucleotides LRK53_RS09570 and LRK53_RS09575 are separated by 87 nucleotides
LRK53_RS09565: LRK53_RS09565 - alanine racemase, at 2,151,393 to 2,152,466
_RS09565
LRK53_RS09570: LRK53_RS09570 - HD domain-containing protein, at 2,152,625 to 2,153,266
_RS09570
LRK53_RS09575: LRK53_RS09575 - hypothetical protein, at 2,153,354 to 2,154,403
_RS09575
Position (kb)
2152
2153
2154 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2152.033 kb on - strand, within LRK53_RS09565 at 2152.452 kb on + strand at 2152.452 kb on + strand at 2152.452 kb on + strand at 2152.452 kb on + strand at 2152.452 kb on + strand at 2152.452 kb on + strand at 2152.453 kb on - strand at 2152.453 kb on - strand at 2152.453 kb on - strand at 2152.453 kb on - strand at 2152.453 kb on - strand at 2152.453 kb on - strand at 2152.453 kb on - strand at 2152.453 kb on - strand at 2152.522 kb on + strand at 2152.522 kb on + strand at 2152.522 kb on + strand at 2152.522 kb on + strand at 2152.522 kb on + strand at 2152.522 kb on + strand at 2152.523 kb on - strand at 2152.523 kb on - strand at 2152.523 kb on - strand at 2152.523 kb on - strand at 2152.523 kb on - strand at 2152.665 kb on - strand at 2152.684 kb on + strand at 2152.715 kb on + strand, within LRK53_RS09570 at 2152.715 kb on + strand, within LRK53_RS09570 at 2152.715 kb on + strand, within LRK53_RS09570 at 2152.715 kb on + strand, within LRK53_RS09570 at 2152.715 kb on + strand, within LRK53_RS09570 at 2152.716 kb on - strand, within LRK53_RS09570 at 2152.721 kb on + strand, within LRK53_RS09570 at 2152.721 kb on + strand, within LRK53_RS09570 at 2152.722 kb on - strand, within LRK53_RS09570 at 2152.968 kb on - strand, within LRK53_RS09570 at 2153.020 kb on + strand, within LRK53_RS09570 at 2153.126 kb on + strand, within LRK53_RS09570 at 2153.126 kb on + strand, within LRK53_RS09570 at 2153.127 kb on - strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.129 kb on + strand, within LRK53_RS09570 at 2153.130 kb on - strand, within LRK53_RS09570 at 2153.130 kb on - strand, within LRK53_RS09570 at 2153.130 kb on - strand, within LRK53_RS09570 at 2153.339 kb on + strand at 2153.340 kb on - strand at 2153.340 kb on - strand at 2153.650 kb on + strand, within LRK53_RS09575 at 2153.651 kb on - strand, within LRK53_RS09575 at 2153.651 kb on - strand, within LRK53_RS09575 at 2153.651 kb on - strand, within LRK53_RS09575 at 2153.749 kb on + strand, within LRK53_RS09575 at 2153.749 kb on + strand, within LRK53_RS09575 at 2153.750 kb on - strand, within LRK53_RS09575 at 2153.750 kb on - strand, within LRK53_RS09575
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 2,152,033 - LRK53_RS09565 0.60 -2.2 2,152,452 + -0.2 2,152,452 + -1.4 2,152,452 + +1.1 2,152,452 + -0.0 2,152,452 + -2.4 2,152,452 + -0.8 2,152,453 - -1.5 2,152,453 - -0.9 2,152,453 - -3.2 2,152,453 - -1.7 2,152,453 - -1.3 2,152,453 - -3.1 2,152,453 - +1.0 2,152,453 - -2.6 2,152,522 + +1.4 2,152,522 + -0.0 2,152,522 + +0.3 2,152,522 + +0.0 2,152,522 + -1.2 2,152,522 + +1.0 2,152,523 - -0.5 2,152,523 - -0.6 2,152,523 - -2.5 2,152,523 - -0.3 2,152,523 - -0.0 2,152,665 - -0.3 2,152,684 + -0.5 2,152,715 + LRK53_RS09570 0.14 -0.8 2,152,715 + LRK53_RS09570 0.14 -2.4 2,152,715 + LRK53_RS09570 0.14 +0.2 2,152,715 + LRK53_RS09570 0.14 +0.1 2,152,715 + LRK53_RS09570 0.14 +1.0 2,152,716 - LRK53_RS09570 0.14 -0.6 2,152,721 + LRK53_RS09570 0.15 -1.6 2,152,721 + LRK53_RS09570 0.15 -1.5 2,152,722 - LRK53_RS09570 0.15 -0.6 2,152,968 - LRK53_RS09570 0.53 +0.4 2,153,020 + LRK53_RS09570 0.62 +1.3 2,153,126 + LRK53_RS09570 0.78 -2.6 2,153,126 + LRK53_RS09570 0.78 +1.0 2,153,127 - LRK53_RS09570 0.78 -0.7 2,153,129 + LRK53_RS09570 0.79 +2.3 2,153,129 + LRK53_RS09570 0.79 +1.5 2,153,129 + LRK53_RS09570 0.79 +1.5 2,153,129 + LRK53_RS09570 0.79 +0.1 2,153,129 + LRK53_RS09570 0.79 +2.5 2,153,129 + LRK53_RS09570 0.79 -1.8 2,153,129 + LRK53_RS09570 0.79 +2.0 2,153,129 + LRK53_RS09570 0.79 +1.1 2,153,129 + LRK53_RS09570 0.79 +2.0 2,153,129 + LRK53_RS09570 0.79 -0.4 2,153,129 + LRK53_RS09570 0.79 -0.6 2,153,130 - LRK53_RS09570 0.79 +1.0 2,153,130 - LRK53_RS09570 0.79 +1.5 2,153,130 - LRK53_RS09570 0.79 -2.4 2,153,339 + -1.0 2,153,340 - -1.6 2,153,340 - -0.0 2,153,650 + LRK53_RS09575 0.28 -0.6 2,153,651 - LRK53_RS09575 0.28 +1.0 2,153,651 - LRK53_RS09575 0.28 -1.6 2,153,651 - LRK53_RS09575 0.28 -0.2 2,153,749 + LRK53_RS09575 0.38 -1.1 2,153,749 + LRK53_RS09575 0.38 -0.8 2,153,750 - LRK53_RS09575 0.38 +2.5 2,153,750 - LRK53_RS09575 0.38 -0.6
Or see this region's nucleotide sequence