Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08910

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08900 and LRK53_RS08905 overlap by 1 nucleotidesLRK53_RS08905 and LRK53_RS08910 overlap by 4 nucleotidesLRK53_RS08910 and LRK53_RS08915 overlap by 4 nucleotidesLRK53_RS08915 and LRK53_RS08920 overlap by 4 nucleotides LRK53_RS08900: LRK53_RS08900 - aminodeoxychorismate synthase component I, at 1,993,727 to 1,995,073 _RS08900 LRK53_RS08905: LRK53_RS08905 - aminodeoxychorismate lyase, at 1,995,073 to 1,995,900 _RS08905 LRK53_RS08910: LRK53_RS08910 - endolytic transglycosylase MltG, at 1,995,897 to 1,996,934 _RS08910 LRK53_RS08915: LRK53_RS08915 - dTMP kinase, at 1,996,931 to 1,997,572 _RS08915 LRK53_RS08920: LRK53_RS08920 - DNA polymerase III subunit delta', at 1,997,569 to 1,998,504 _RS08920 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1995.143 kb on - strandat 1995.143 kb on - strandat 1995.143 kb on - strandat 1995.143 kb on - strandat 1995.143 kb on - strandat 1995.143 kb on - strandat 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.241 kb on + strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.242 kb on - strand, within LRK53_RS08905at 1995.243 kb on + strand, within LRK53_RS08905at 1995.243 kb on + strand, within LRK53_RS08905at 1995.243 kb on + strand, within LRK53_RS08905at 1995.243 kb on + strand, within LRK53_RS08905at 1995.244 kb on - strand, within LRK53_RS08905at 1995.244 kb on - strand, within LRK53_RS08905at 1995.269 kb on + strand, within LRK53_RS08905at 1995.269 kb on + strand, within LRK53_RS08905at 1995.269 kb on + strand, within LRK53_RS08905at 1995.269 kb on + strand, within LRK53_RS08905at 1995.269 kb on + strand, within LRK53_RS08905at 1995.269 kb on + strand, within LRK53_RS08905at 1995.269 kb on + strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.270 kb on - strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.430 kb on + strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.431 kb on - strand, within LRK53_RS08905at 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.823 kb on + strandat 1995.824 kb on - strandat 1996.419 kb on + strand, within LRK53_RS08910at 1996.419 kb on + strand, within LRK53_RS08910at 1996.689 kb on + strand, within LRK53_RS08910at 1996.689 kb on + strand, within LRK53_RS08910at 1996.743 kb on + strand, within LRK53_RS08910at 1996.743 kb on + strand, within LRK53_RS08910at 1996.743 kb on + strand, within LRK53_RS08910at 1996.743 kb on + strand, within LRK53_RS08910at 1996.743 kb on + strand, within LRK53_RS08910at 1996.744 kb on - strand, within LRK53_RS08910at 1996.744 kb on - strand, within LRK53_RS08910at 1996.744 kb on - strand, within LRK53_RS08910at 1996.744 kb on - strand, within LRK53_RS08910at 1996.837 kb on - strandat 1996.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,995,143 - -0.2
1,995,143 - -0.7
1,995,143 - +1.2
1,995,143 - -0.5
1,995,143 - -0.7
1,995,143 - +0.1
1,995,241 + LRK53_RS08905 0.20 +0.1
1,995,241 + LRK53_RS08905 0.20 +1.9
1,995,241 + LRK53_RS08905 0.20 -1.7
1,995,241 + LRK53_RS08905 0.20 +1.1
1,995,241 + LRK53_RS08905 0.20 +0.5
1,995,241 + LRK53_RS08905 0.20 -0.5
1,995,241 + LRK53_RS08905 0.20 -0.2
1,995,241 + LRK53_RS08905 0.20 +0.4
1,995,241 + LRK53_RS08905 0.20 +0.0
1,995,241 + LRK53_RS08905 0.20 -0.6
1,995,241 + LRK53_RS08905 0.20 +1.1
1,995,241 + LRK53_RS08905 0.20 -0.3
1,995,241 + LRK53_RS08905 0.20 -0.5
1,995,241 + LRK53_RS08905 0.20 +0.0
1,995,241 + LRK53_RS08905 0.20 -1.0
1,995,241 + LRK53_RS08905 0.20 -1.2
1,995,241 + LRK53_RS08905 0.20 -0.6
1,995,241 + LRK53_RS08905 0.20 +0.1
1,995,241 + LRK53_RS08905 0.20 -1.6
1,995,241 + LRK53_RS08905 0.20 -0.9
1,995,241 + LRK53_RS08905 0.20 -0.9
1,995,241 + LRK53_RS08905 0.20 -1.1
1,995,241 + LRK53_RS08905 0.20 -0.1
1,995,241 + LRK53_RS08905 0.20 -0.2
1,995,241 + LRK53_RS08905 0.20 +0.3
1,995,241 + LRK53_RS08905 0.20 -0.1
1,995,241 + LRK53_RS08905 0.20 -0.3
1,995,241 + LRK53_RS08905 0.20 +0.1
1,995,241 + LRK53_RS08905 0.20 -1.1
1,995,241 + LRK53_RS08905 0.20 -2.3
1,995,241 + LRK53_RS08905 0.20 -1.2
1,995,241 + LRK53_RS08905 0.20 -1.4
1,995,241 + LRK53_RS08905 0.20 -0.3
1,995,241 + LRK53_RS08905 0.20 -0.1
1,995,241 + LRK53_RS08905 0.20 -1.9
1,995,242 - LRK53_RS08905 0.20 -0.6
1,995,242 - LRK53_RS08905 0.20 +0.1
1,995,242 - LRK53_RS08905 0.20 -1.2
1,995,242 - LRK53_RS08905 0.20 +1.1
1,995,242 - LRK53_RS08905 0.20 +0.3
1,995,242 - LRK53_RS08905 0.20 +0.1
1,995,242 - LRK53_RS08905 0.20 +0.5
1,995,242 - LRK53_RS08905 0.20 +0.1
1,995,242 - LRK53_RS08905 0.20 -2.2
1,995,242 - LRK53_RS08905 0.20 -0.4
1,995,242 - LRK53_RS08905 0.20 +0.3
1,995,242 - LRK53_RS08905 0.20 +0.2
1,995,242 - LRK53_RS08905 0.20 -0.7
1,995,242 - LRK53_RS08905 0.20 -0.8
1,995,242 - LRK53_RS08905 0.20 -0.1
1,995,242 - LRK53_RS08905 0.20 +2.1
1,995,242 - LRK53_RS08905 0.20 -1.5
1,995,242 - LRK53_RS08905 0.20 -0.1
1,995,242 - LRK53_RS08905 0.20 +0.1
1,995,242 - LRK53_RS08905 0.20 +0.8
1,995,242 - LRK53_RS08905 0.20 -1.0
1,995,242 - LRK53_RS08905 0.20 -0.1
1,995,242 - LRK53_RS08905 0.20 -0.2
1,995,242 - LRK53_RS08905 0.20 +1.2
1,995,242 - LRK53_RS08905 0.20 -0.0
1,995,242 - LRK53_RS08905 0.20 -0.5
1,995,242 - LRK53_RS08905 0.20 -0.4
1,995,242 - LRK53_RS08905 0.20 -2.5
1,995,242 - LRK53_RS08905 0.20 +0.5
1,995,242 - LRK53_RS08905 0.20 -0.9
1,995,242 - LRK53_RS08905 0.20 +1.5
1,995,242 - LRK53_RS08905 0.20 -0.8
1,995,242 - LRK53_RS08905 0.20 +1.1
1,995,242 - LRK53_RS08905 0.20 -1.2
1,995,242 - LRK53_RS08905 0.20 -0.3
1,995,242 - LRK53_RS08905 0.20 +1.1
1,995,242 - LRK53_RS08905 0.20 -0.2
1,995,243 + LRK53_RS08905 0.21 +0.1
1,995,243 + LRK53_RS08905 0.21 -1.0
1,995,243 + LRK53_RS08905 0.21 -0.5
1,995,243 + LRK53_RS08905 0.21 +0.0
1,995,244 - LRK53_RS08905 0.21 -0.9
1,995,244 - LRK53_RS08905 0.21 +0.3
1,995,269 + LRK53_RS08905 0.24 +0.4
1,995,269 + LRK53_RS08905 0.24 -0.1
1,995,269 + LRK53_RS08905 0.24 -0.7
1,995,269 + LRK53_RS08905 0.24 +2.1
1,995,269 + LRK53_RS08905 0.24 +0.6
1,995,269 + LRK53_RS08905 0.24 +1.2
1,995,269 + LRK53_RS08905 0.24 +0.1
1,995,270 - LRK53_RS08905 0.24 +0.0
1,995,270 - LRK53_RS08905 0.24 -0.9
1,995,270 - LRK53_RS08905 0.24 -1.6
1,995,270 - LRK53_RS08905 0.24 -0.2
1,995,270 - LRK53_RS08905 0.24 -0.4
1,995,270 - LRK53_RS08905 0.24 -2.1
1,995,270 - LRK53_RS08905 0.24 +0.1
1,995,270 - LRK53_RS08905 0.24 +2.7
1,995,270 - LRK53_RS08905 0.24 -0.0
1,995,430 + LRK53_RS08905 0.43 -0.2
1,995,430 + LRK53_RS08905 0.43 +1.1
1,995,430 + LRK53_RS08905 0.43 +0.1
1,995,430 + LRK53_RS08905 0.43 -0.8
1,995,430 + LRK53_RS08905 0.43 -0.9
1,995,430 + LRK53_RS08905 0.43 -2.2
1,995,430 + LRK53_RS08905 0.43 +0.8
1,995,430 + LRK53_RS08905 0.43 -1.2
1,995,430 + LRK53_RS08905 0.43 +0.2
1,995,430 + LRK53_RS08905 0.43 +0.8
1,995,430 + LRK53_RS08905 0.43 +1.1
1,995,430 + LRK53_RS08905 0.43 -0.8
1,995,430 + LRK53_RS08905 0.43 -1.2
1,995,430 + LRK53_RS08905 0.43 +1.1
1,995,430 + LRK53_RS08905 0.43 +0.9
1,995,430 + LRK53_RS08905 0.43 +1.2
1,995,430 + LRK53_RS08905 0.43 +0.4
1,995,430 + LRK53_RS08905 0.43 -1.8
1,995,430 + LRK53_RS08905 0.43 -1.7
1,995,430 + LRK53_RS08905 0.43 -0.5
1,995,430 + LRK53_RS08905 0.43 +3.1
1,995,430 + LRK53_RS08905 0.43 -0.1
1,995,430 + LRK53_RS08905 0.43 -0.2
1,995,430 + LRK53_RS08905 0.43 -0.5
1,995,430 + LRK53_RS08905 0.43 -0.9
1,995,430 + LRK53_RS08905 0.43 -0.7
1,995,430 + LRK53_RS08905 0.43 -0.6
1,995,430 + LRK53_RS08905 0.43 -1.3
1,995,430 + LRK53_RS08905 0.43 -1.5
1,995,430 + LRK53_RS08905 0.43 +0.4
1,995,430 + LRK53_RS08905 0.43 -1.2
1,995,430 + LRK53_RS08905 0.43 -2.8
1,995,430 + LRK53_RS08905 0.43 -0.2
1,995,430 + LRK53_RS08905 0.43 +1.1
1,995,430 + LRK53_RS08905 0.43 +0.1
1,995,431 - LRK53_RS08905 0.43 +0.8
1,995,431 - LRK53_RS08905 0.43 -0.4
1,995,431 - LRK53_RS08905 0.43 -0.2
1,995,431 - LRK53_RS08905 0.43 -0.5
1,995,431 - LRK53_RS08905 0.43 +2.1
1,995,431 - LRK53_RS08905 0.43 +1.1
1,995,431 - LRK53_RS08905 0.43 +0.3
1,995,431 - LRK53_RS08905 0.43 -0.2
1,995,431 - LRK53_RS08905 0.43 -1.4
1,995,431 - LRK53_RS08905 0.43 -1.1
1,995,431 - LRK53_RS08905 0.43 +0.0
1,995,431 - LRK53_RS08905 0.43 +0.5
1,995,431 - LRK53_RS08905 0.43 -0.0
1,995,431 - LRK53_RS08905 0.43 +2.1
1,995,431 - LRK53_RS08905 0.43 +0.5
1,995,431 - LRK53_RS08905 0.43 -0.5
1,995,431 - LRK53_RS08905 0.43 -0.8
1,995,431 - LRK53_RS08905 0.43 -0.6
1,995,823 + -0.5
1,995,823 + +1.3
1,995,823 + -1.2
1,995,823 + +0.1
1,995,823 + -0.9
1,995,823 + -0.9
1,995,823 + +0.1
1,995,823 + +1.0
1,995,823 + -1.2
1,995,823 + +0.9
1,995,823 + +0.5
1,995,823 + -1.2
1,995,823 + -1.7
1,995,824 - -0.5
1,996,419 + LRK53_RS08910 0.50 -0.5
1,996,419 + LRK53_RS08910 0.50 -1.5
1,996,689 + LRK53_RS08910 0.76 +2.7
1,996,689 + LRK53_RS08910 0.76 +0.4
1,996,743 + LRK53_RS08910 0.82 +1.1
1,996,743 + LRK53_RS08910 0.82 -0.3
1,996,743 + LRK53_RS08910 0.82 -1.1
1,996,743 + LRK53_RS08910 0.82 -0.7
1,996,743 + LRK53_RS08910 0.82 +1.1
1,996,744 - LRK53_RS08910 0.82 +0.1
1,996,744 - LRK53_RS08910 0.82 -2.2
1,996,744 - LRK53_RS08910 0.82 +0.7
1,996,744 - LRK53_RS08910 0.82 -0.9
1,996,837 - -2.9
1,996,912 - +0.8

Or see this region's nucleotide sequence