Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08540 and LRK53_RS08545 are separated by 325 nucleotides LRK53_RS08545 and LRK53_RS08550 are separated by 366 nucleotides
LRK53_RS08540: LRK53_RS08540 - DNA topoisomerase IV subunit B, at 1,915,800 to 1,917,689
_RS08540
LRK53_RS08545: LRK53_RS08545 - hypothetical protein, at 1,918,015 to 1,919,085
_RS08545
LRK53_RS08550: LRK53_RS08550 - ABC transporter ATP-binding protein/permease, at 1,919,452 to 1,921,299
_RS08550
Position (kb) 1918
1919
1920 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1917.864 kb on + strand at 1917.864 kb on + strand at 1917.865 kb on - strand at 1917.865 kb on - strand at 1917.865 kb on - strand at 1917.865 kb on - strand at 1917.865 kb on - strand at 1917.909 kb on + strand at 1917.909 kb on + strand at 1917.909 kb on + strand at 1917.909 kb on + strand at 1917.909 kb on + strand at 1917.909 kb on + strand at 1917.909 kb on + strand at 1917.909 kb on + strand at 1917.910 kb on - strand at 1917.910 kb on - strand at 1917.910 kb on - strand at 1917.910 kb on - strand at 1918.149 kb on + strand, within LRK53_RS08545 at 1918.149 kb on + strand, within LRK53_RS08545 at 1918.149 kb on + strand, within LRK53_RS08545 at 1918.149 kb on + strand, within LRK53_RS08545 at 1918.149 kb on + strand, within LRK53_RS08545 at 1918.150 kb on - strand, within LRK53_RS08545 at 1918.150 kb on - strand, within LRK53_RS08545 at 1918.150 kb on - strand, within LRK53_RS08545 at 1918.155 kb on + strand, within LRK53_RS08545 at 1918.155 kb on + strand, within LRK53_RS08545 at 1918.155 kb on + strand, within LRK53_RS08545 at 1918.156 kb on - strand, within LRK53_RS08545 at 1918.390 kb on + strand, within LRK53_RS08545 at 1918.390 kb on + strand, within LRK53_RS08545 at 1918.390 kb on + strand, within LRK53_RS08545 at 1918.391 kb on - strand, within LRK53_RS08545 at 1918.391 kb on - strand, within LRK53_RS08545 at 1918.391 kb on - strand, within LRK53_RS08545 at 1918.391 kb on - strand, within LRK53_RS08545 at 1918.450 kb on + strand, within LRK53_RS08545 at 1918.450 kb on + strand, within LRK53_RS08545 at 1918.450 kb on + strand, within LRK53_RS08545 at 1918.633 kb on + strand, within LRK53_RS08545 at 1918.633 kb on + strand, within LRK53_RS08545 at 1918.633 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.884 kb on + strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.885 kb on - strand, within LRK53_RS08545 at 1918.941 kb on + strand, within LRK53_RS08545 at 1918.941 kb on + strand, within LRK53_RS08545 at 1918.941 kb on + strand, within LRK53_RS08545 at 1918.941 kb on + strand, within LRK53_RS08545 at 1918.975 kb on + strand, within LRK53_RS08545 at 1918.975 kb on + strand, within LRK53_RS08545 at 1918.975 kb on + strand, within LRK53_RS08545 at 1918.975 kb on + strand, within LRK53_RS08545 at 1918.975 kb on + strand, within LRK53_RS08545 at 1918.975 kb on + strand, within LRK53_RS08545 at 1918.975 kb on + strand, within LRK53_RS08545 at 1918.976 kb on - strand, within LRK53_RS08545 at 1918.976 kb on - strand, within LRK53_RS08545 at 1918.976 kb on - strand, within LRK53_RS08545 at 1918.976 kb on - strand, within LRK53_RS08545 at 1918.976 kb on - strand, within LRK53_RS08545 at 1918.976 kb on - strand, within LRK53_RS08545 at 1918.997 kb on + strand at 1919.095 kb on + strand at 1919.095 kb on + strand at 1919.095 kb on + strand at 1919.095 kb on + strand at 1919.096 kb on - strand at 1919.096 kb on - strand at 1919.221 kb on + strand at 1919.221 kb on + strand at 1919.222 kb on - strand at 1919.222 kb on - strand at 1919.222 kb on - strand at 1919.492 kb on + strand at 1919.493 kb on - strand at 1919.937 kb on - strand, within LRK53_RS08550 at 1920.044 kb on + strand, within LRK53_RS08550 at 1920.044 kb on + strand, within LRK53_RS08550 at 1920.044 kb on + strand, within LRK53_RS08550 at 1920.045 kb on - strand, within LRK53_RS08550
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 1,917,864 + -2.3 1,917,864 + -0.7 1,917,865 - -1.6 1,917,865 - -0.1 1,917,865 - -0.7 1,917,865 - -0.9 1,917,865 - +0.9 1,917,909 + -0.7 1,917,909 + +0.2 1,917,909 + +0.2 1,917,909 + +0.5 1,917,909 + -1.3 1,917,909 + +0.9 1,917,909 + -1.9 1,917,909 + +0.0 1,917,910 - -0.8 1,917,910 - -0.1 1,917,910 - -0.7 1,917,910 - -0.3 1,918,149 + LRK53_RS08545 0.13 -2.1 1,918,149 + LRK53_RS08545 0.13 +0.1 1,918,149 + LRK53_RS08545 0.13 +0.5 1,918,149 + LRK53_RS08545 0.13 +0.5 1,918,149 + LRK53_RS08545 0.13 +0.6 1,918,150 - LRK53_RS08545 0.13 -1.7 1,918,150 - LRK53_RS08545 0.13 -0.5 1,918,150 - LRK53_RS08545 0.13 -1.0 1,918,155 + LRK53_RS08545 0.13 +0.9 1,918,155 + LRK53_RS08545 0.13 -1.1 1,918,155 + LRK53_RS08545 0.13 -0.3 1,918,156 - LRK53_RS08545 0.13 +0.9 1,918,390 + LRK53_RS08545 0.35 -0.9 1,918,390 + LRK53_RS08545 0.35 -0.1 1,918,390 + LRK53_RS08545 0.35 -0.4 1,918,391 - LRK53_RS08545 0.35 +0.2 1,918,391 - LRK53_RS08545 0.35 -2.6 1,918,391 - LRK53_RS08545 0.35 -0.9 1,918,391 - LRK53_RS08545 0.35 +1.2 1,918,450 + LRK53_RS08545 0.41 -0.7 1,918,450 + LRK53_RS08545 0.41 -0.7 1,918,450 + LRK53_RS08545 0.41 -1.3 1,918,633 + LRK53_RS08545 0.58 -1.4 1,918,633 + LRK53_RS08545 0.58 +0.5 1,918,633 + LRK53_RS08545 0.58 -0.7 1,918,884 + LRK53_RS08545 0.81 +0.9 1,918,884 + LRK53_RS08545 0.81 -1.8 1,918,884 + LRK53_RS08545 0.81 +0.6 1,918,884 + LRK53_RS08545 0.81 +0.4 1,918,884 + LRK53_RS08545 0.81 -0.7 1,918,884 + LRK53_RS08545 0.81 -1.6 1,918,884 + LRK53_RS08545 0.81 -1.1 1,918,884 + LRK53_RS08545 0.81 -0.4 1,918,884 + LRK53_RS08545 0.81 -1.1 1,918,884 + LRK53_RS08545 0.81 -0.1 1,918,884 + LRK53_RS08545 0.81 -0.6 1,918,884 + LRK53_RS08545 0.81 -2.6 1,918,884 + LRK53_RS08545 0.81 +0.3 1,918,884 + LRK53_RS08545 0.81 +0.5 1,918,884 + LRK53_RS08545 0.81 -0.7 1,918,884 + LRK53_RS08545 0.81 +0.7 1,918,884 + LRK53_RS08545 0.81 -0.9 1,918,884 + LRK53_RS08545 0.81 -1.3 1,918,884 + LRK53_RS08545 0.81 -2.3 1,918,884 + LRK53_RS08545 0.81 -0.4 1,918,884 + LRK53_RS08545 0.81 -0.9 1,918,884 + LRK53_RS08545 0.81 -0.2 1,918,884 + LRK53_RS08545 0.81 -1.4 1,918,884 + LRK53_RS08545 0.81 -1.5 1,918,884 + LRK53_RS08545 0.81 -1.4 1,918,885 - LRK53_RS08545 0.81 -1.4 1,918,885 - LRK53_RS08545 0.81 +0.0 1,918,885 - LRK53_RS08545 0.81 -0.7 1,918,885 - LRK53_RS08545 0.81 -1.4 1,918,885 - LRK53_RS08545 0.81 -2.1 1,918,885 - LRK53_RS08545 0.81 -0.4 1,918,885 - LRK53_RS08545 0.81 +0.1 1,918,885 - LRK53_RS08545 0.81 -0.6 1,918,885 - LRK53_RS08545 0.81 +0.4 1,918,885 - LRK53_RS08545 0.81 -1.0 1,918,885 - LRK53_RS08545 0.81 +0.3 1,918,885 - LRK53_RS08545 0.81 +0.6 1,918,885 - LRK53_RS08545 0.81 +0.6 1,918,885 - LRK53_RS08545 0.81 -1.3 1,918,885 - LRK53_RS08545 0.81 -0.4 1,918,885 - LRK53_RS08545 0.81 -3.2 1,918,885 - LRK53_RS08545 0.81 +0.6 1,918,885 - LRK53_RS08545 0.81 -2.1 1,918,885 - LRK53_RS08545 0.81 -0.3 1,918,885 - LRK53_RS08545 0.81 -1.1 1,918,885 - LRK53_RS08545 0.81 -1.1 1,918,885 - LRK53_RS08545 0.81 +1.3 1,918,885 - LRK53_RS08545 0.81 +1.9 1,918,885 - LRK53_RS08545 0.81 +1.2 1,918,885 - LRK53_RS08545 0.81 -2.4 1,918,885 - LRK53_RS08545 0.81 +0.9 1,918,885 - LRK53_RS08545 0.81 -0.5 1,918,885 - LRK53_RS08545 0.81 +0.6 1,918,885 - LRK53_RS08545 0.81 -1.1 1,918,885 - LRK53_RS08545 0.81 -0.7 1,918,885 - LRK53_RS08545 0.81 -0.7 1,918,885 - LRK53_RS08545 0.81 -0.4 1,918,885 - LRK53_RS08545 0.81 -2.3 1,918,885 - LRK53_RS08545 0.81 -0.8 1,918,885 - LRK53_RS08545 0.81 -1.1 1,918,885 - LRK53_RS08545 0.81 -0.4 1,918,885 - LRK53_RS08545 0.81 -1.4 1,918,885 - LRK53_RS08545 0.81 -1.9 1,918,941 + LRK53_RS08545 0.86 -0.1 1,918,941 + LRK53_RS08545 0.86 -1.6 1,918,941 + LRK53_RS08545 0.86 -1.6 1,918,941 + LRK53_RS08545 0.86 -2.3 1,918,975 + LRK53_RS08545 0.90 +0.5 1,918,975 + LRK53_RS08545 0.90 -2.4 1,918,975 + LRK53_RS08545 0.90 -1.9 1,918,975 + LRK53_RS08545 0.90 -0.1 1,918,975 + LRK53_RS08545 0.90 -0.5 1,918,975 + LRK53_RS08545 0.90 -0.4 1,918,975 + LRK53_RS08545 0.90 -1.1 1,918,976 - LRK53_RS08545 0.90 +0.3 1,918,976 - LRK53_RS08545 0.90 -0.4 1,918,976 - LRK53_RS08545 0.90 -0.8 1,918,976 - LRK53_RS08545 0.90 -1.3 1,918,976 - LRK53_RS08545 0.90 -1.7 1,918,976 - LRK53_RS08545 0.90 -2.1 1,918,997 + -1.4 1,919,095 + +1.9 1,919,095 + -0.1 1,919,095 + +1.2 1,919,095 + +0.5 1,919,096 - +0.4 1,919,096 - +0.4 1,919,221 + -3.0 1,919,221 + -0.7 1,919,222 - +1.2 1,919,222 - -0.5 1,919,222 - -2.1 1,919,492 + -0.0 1,919,493 - +0.3 1,919,937 - LRK53_RS08550 0.26 -0.3 1,920,044 + LRK53_RS08550 0.32 -0.3 1,920,044 + LRK53_RS08550 0.32 -0.1 1,920,044 + LRK53_RS08550 0.32 -0.6 1,920,045 - LRK53_RS08550 0.32 -0.9
Or see this region's nucleotide sequence