Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08450

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08445 and LRK53_RS08450 are separated by 699 nucleotidesLRK53_RS08450 and LRK53_RS08455 overlap by 4 nucleotidesLRK53_RS08455 and LRK53_RS08460 are separated by 28 nucleotides LRK53_RS08445: LRK53_RS08445 - ribonucleoside-diphosphate reductase subunit alpha, at 1,896,353 to 1,898,776 _RS08445 LRK53_RS08450: LRK53_RS08450 - YerC/YecD family TrpR-related protein, at 1,899,476 to 1,899,808 _RS08450 LRK53_RS08455: LRK53_RS08455 - ATP phosphoribosyltransferase, at 1,899,805 to 1,900,698 _RS08455 LRK53_RS08460: LRK53_RS08460 - histidinol dehydrogenase, at 1,900,727 to 1,902,025 _RS08460 Position (kb) 1899 1900Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1899.184 kb on - strandat 1899.184 kb on - strandat 1899.184 kb on - strandat 1899.184 kb on - strandat 1899.184 kb on - strandat 1899.439 kb on + strandat 1899.439 kb on + strandat 1899.452 kb on - strandat 1899.485 kb on - strandat 1899.530 kb on + strand, within LRK53_RS08450at 1899.530 kb on + strand, within LRK53_RS08450at 1899.531 kb on - strand, within LRK53_RS08450at 1899.531 kb on - strand, within LRK53_RS08450at 1899.531 kb on - strand, within LRK53_RS08450at 1899.747 kb on - strand, within LRK53_RS08450at 1900.144 kb on + strand, within LRK53_RS08455at 1900.144 kb on + strand, within LRK53_RS08455at 1900.144 kb on + strand, within LRK53_RS08455at 1900.145 kb on - strand, within LRK53_RS08455at 1900.145 kb on - strand, within LRK53_RS08455at 1900.145 kb on - strand, within LRK53_RS08455at 1900.145 kb on - strand, within LRK53_RS08455at 1900.190 kb on - strand, within LRK53_RS08455

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,899,184 - +0.1
1,899,184 - -0.1
1,899,184 - +1.1
1,899,184 - -1.4
1,899,184 - -0.6
1,899,439 + +0.7
1,899,439 + +2.1
1,899,452 - -0.6
1,899,485 - +0.1
1,899,530 + LRK53_RS08450 0.16 -2.6
1,899,530 + LRK53_RS08450 0.16 +0.5
1,899,531 - LRK53_RS08450 0.17 +0.5
1,899,531 - LRK53_RS08450 0.17 -0.3
1,899,531 - LRK53_RS08450 0.17 -1.5
1,899,747 - LRK53_RS08450 0.81 -1.6
1,900,144 + LRK53_RS08455 0.38 -3.1
1,900,144 + LRK53_RS08455 0.38 +1.7
1,900,144 + LRK53_RS08455 0.38 -1.1
1,900,145 - LRK53_RS08455 0.38 +0.5
1,900,145 - LRK53_RS08455 0.38 -1.3
1,900,145 - LRK53_RS08455 0.38 -1.5
1,900,145 - LRK53_RS08455 0.38 -2.9
1,900,190 - LRK53_RS08455 0.43 -1.4

Or see this region's nucleotide sequence