Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08355

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08350 and LRK53_RS08355 overlap by 4 nucleotidesLRK53_RS08355 and LRK53_RS08360 are separated by 46 nucleotides LRK53_RS08350: LRK53_RS08350 - tryptophan synthase subunit beta, at 1,876,528 to 1,877,739 _RS08350 LRK53_RS08355: LRK53_RS08355 - tryptophan synthase subunit alpha, at 1,877,736 to 1,878,536 _RS08355 LRK53_RS08360: LRK53_RS08360 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,878,583 to 1,879,452 _RS08360 Position (kb) 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1 2at 1876.801 kb on - strand, within LRK53_RS08350at 1876.951 kb on + strand, within LRK53_RS08350at 1876.952 kb on - strand, within LRK53_RS08350at 1876.952 kb on - strand, within LRK53_RS08350at 1876.952 kb on - strand, within LRK53_RS08350at 1876.952 kb on - strand, within LRK53_RS08350at 1877.111 kb on - strand, within LRK53_RS08350at 1877.111 kb on - strand, within LRK53_RS08350at 1877.111 kb on - strand, within LRK53_RS08350at 1877.212 kb on + strand, within LRK53_RS08350at 1877.213 kb on - strand, within LRK53_RS08350at 1877.407 kb on + strand, within LRK53_RS08350at 1877.408 kb on - strand, within LRK53_RS08350at 1877.524 kb on + strand, within LRK53_RS08350at 1877.524 kb on + strand, within LRK53_RS08350at 1877.525 kb on - strand, within LRK53_RS08350at 1877.525 kb on - strand, within LRK53_RS08350at 1877.647 kb on + strandat 1877.735 kb on + strandat 1877.735 kb on + strandat 1877.735 kb on + strandat 1877.735 kb on + strandat 1877.735 kb on + strandat 1877.735 kb on + strandat 1877.735 kb on + strandat 1877.735 kb on + strandat 1877.735 kb on + strandat 1877.736 kb on - strandat 1877.736 kb on - strandat 1877.736 kb on - strandat 1877.736 kb on - strandat 1877.736 kb on - strandat 1878.066 kb on + strand, within LRK53_RS08355at 1878.258 kb on + strand, within LRK53_RS08355at 1878.258 kb on + strand, within LRK53_RS08355at 1878.258 kb on + strand, within LRK53_RS08355at 1878.258 kb on + strand, within LRK53_RS08355

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,876,801 - LRK53_RS08350 0.23 +0.1
1,876,951 + LRK53_RS08350 0.35 +2.1
1,876,952 - LRK53_RS08350 0.35 -0.5
1,876,952 - LRK53_RS08350 0.35 +0.1
1,876,952 - LRK53_RS08350 0.35 -0.5
1,876,952 - LRK53_RS08350 0.35 -0.1
1,877,111 - LRK53_RS08350 0.48 -0.2
1,877,111 - LRK53_RS08350 0.48 -2.1
1,877,111 - LRK53_RS08350 0.48 +1.1
1,877,212 + LRK53_RS08350 0.56 +0.1
1,877,213 - LRK53_RS08350 0.57 +2.7
1,877,407 + LRK53_RS08350 0.73 -0.5
1,877,408 - LRK53_RS08350 0.73 -0.5
1,877,524 + LRK53_RS08350 0.82 +0.1
1,877,524 + LRK53_RS08350 0.82 -0.5
1,877,525 - LRK53_RS08350 0.82 +0.1
1,877,525 - LRK53_RS08350 0.82 +1.1
1,877,647 + +0.5
1,877,735 + -0.5
1,877,735 + +0.1
1,877,735 + -0.9
1,877,735 + +1.7
1,877,735 + +1.1
1,877,735 + +1.1
1,877,735 + -0.8
1,877,735 + -2.6
1,877,735 + -0.3
1,877,736 - -2.2
1,877,736 - +0.3
1,877,736 - +0.1
1,877,736 - -0.8
1,877,736 - +0.1
1,878,066 + LRK53_RS08355 0.41 -0.5
1,878,258 + LRK53_RS08355 0.65 +1.1
1,878,258 + LRK53_RS08355 0.65 -1.0
1,878,258 + LRK53_RS08355 0.65 +1.1
1,878,258 + LRK53_RS08355 0.65 -1.9

Or see this region's nucleotide sequence