Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08350 and LRK53_RS08355 overlap by 4 nucleotides LRK53_RS08355 and LRK53_RS08360 are separated by 46 nucleotides
LRK53_RS08350: LRK53_RS08350 - tryptophan synthase subunit beta, at 1,876,528 to 1,877,739
_RS08350
LRK53_RS08355: LRK53_RS08355 - tryptophan synthase subunit alpha, at 1,877,736 to 1,878,536
_RS08355
LRK53_RS08360: LRK53_RS08360 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,878,583 to 1,879,452
_RS08360
Position (kb)
1877
1878
1879 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1876.801 kb on - strand, within LRK53_RS08350 at 1876.951 kb on + strand, within LRK53_RS08350 at 1876.952 kb on - strand, within LRK53_RS08350 at 1876.952 kb on - strand, within LRK53_RS08350 at 1876.952 kb on - strand, within LRK53_RS08350 at 1876.952 kb on - strand, within LRK53_RS08350 at 1877.111 kb on - strand, within LRK53_RS08350 at 1877.111 kb on - strand, within LRK53_RS08350 at 1877.111 kb on - strand, within LRK53_RS08350 at 1877.212 kb on + strand, within LRK53_RS08350 at 1877.213 kb on - strand, within LRK53_RS08350 at 1877.407 kb on + strand, within LRK53_RS08350 at 1877.408 kb on - strand, within LRK53_RS08350 at 1877.524 kb on + strand, within LRK53_RS08350 at 1877.524 kb on + strand, within LRK53_RS08350 at 1877.525 kb on - strand, within LRK53_RS08350 at 1877.525 kb on - strand, within LRK53_RS08350 at 1877.647 kb on + strand at 1877.735 kb on + strand at 1877.735 kb on + strand at 1877.735 kb on + strand at 1877.735 kb on + strand at 1877.735 kb on + strand at 1877.735 kb on + strand at 1877.735 kb on + strand at 1877.735 kb on + strand at 1877.735 kb on + strand at 1877.736 kb on - strand at 1877.736 kb on - strand at 1877.736 kb on - strand at 1877.736 kb on - strand at 1877.736 kb on - strand at 1878.066 kb on + strand, within LRK53_RS08355 at 1878.258 kb on + strand, within LRK53_RS08355 at 1878.258 kb on + strand, within LRK53_RS08355 at 1878.258 kb on + strand, within LRK53_RS08355 at 1878.258 kb on + strand, within LRK53_RS08355
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 1,876,801 - LRK53_RS08350 0.23 +0.1 1,876,951 + LRK53_RS08350 0.35 +2.1 1,876,952 - LRK53_RS08350 0.35 -0.5 1,876,952 - LRK53_RS08350 0.35 +0.1 1,876,952 - LRK53_RS08350 0.35 -0.5 1,876,952 - LRK53_RS08350 0.35 -0.1 1,877,111 - LRK53_RS08350 0.48 -0.2 1,877,111 - LRK53_RS08350 0.48 -2.1 1,877,111 - LRK53_RS08350 0.48 +1.1 1,877,212 + LRK53_RS08350 0.56 +0.1 1,877,213 - LRK53_RS08350 0.57 +2.7 1,877,407 + LRK53_RS08350 0.73 -0.5 1,877,408 - LRK53_RS08350 0.73 -0.5 1,877,524 + LRK53_RS08350 0.82 +0.1 1,877,524 + LRK53_RS08350 0.82 -0.5 1,877,525 - LRK53_RS08350 0.82 +0.1 1,877,525 - LRK53_RS08350 0.82 +1.1 1,877,647 + +0.5 1,877,735 + -0.5 1,877,735 + +0.1 1,877,735 + -0.9 1,877,735 + +1.7 1,877,735 + +1.1 1,877,735 + +1.1 1,877,735 + -0.8 1,877,735 + -2.6 1,877,735 + -0.3 1,877,736 - -2.2 1,877,736 - +0.3 1,877,736 - +0.1 1,877,736 - -0.8 1,877,736 - +0.1 1,878,066 + LRK53_RS08355 0.41 -0.5 1,878,258 + LRK53_RS08355 0.65 +1.1 1,878,258 + LRK53_RS08355 0.65 -1.0 1,878,258 + LRK53_RS08355 0.65 +1.1 1,878,258 + LRK53_RS08355 0.65 -1.9
Or see this region's nucleotide sequence