Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07975 and LRK53_RS07980 are separated by 196 nucleotides LRK53_RS07980 and LRK53_RS07985 overlap by 4 nucleotides LRK53_RS07985 and LRK53_RS07990 overlap by 4 nucleotides
LRK53_RS07975: LRK53_RS07975 - acyl-CoA dehydrogenase family protein, at 1,790,814 to 1,791,983
_RS07975
LRK53_RS07980: LRK53_RS07980 - GNAT family N-acetyltransferase, at 1,792,180 to 1,792,722
_RS07980
LRK53_RS07985: LRK53_RS07985 - hypothetical protein, at 1,792,719 to 1,793,201
_RS07985
LRK53_RS07990: LRK53_RS07990 - glutathione S-transferase family protein, at 1,793,198 to 1,793,809
_RS07990
Position (kb) 1792
1793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1791.561 kb on + strand, within LRK53_RS07975 at 1791.621 kb on + strand, within LRK53_RS07975 at 1791.622 kb on - strand, within LRK53_RS07975 at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.915 kb on + strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.916 kb on - strand at 1791.923 kb on + strand at 1792.100 kb on + strand at 1792.100 kb on + strand at 1792.100 kb on + strand at 1792.100 kb on + strand at 1792.101 kb on - strand at 1792.101 kb on - strand at 1792.101 kb on - strand at 1792.217 kb on + strand at 1792.218 kb on - strand at 1792.256 kb on - strand, within LRK53_RS07980 at 1792.657 kb on + strand, within LRK53_RS07980 at 1792.658 kb on - strand, within LRK53_RS07980 at 1792.658 kb on - strand, within LRK53_RS07980 at 1792.658 kb on - strand, within LRK53_RS07980 at 1792.962 kb on + strand, within LRK53_RS07985 at 1792.962 kb on + strand, within LRK53_RS07985 at 1792.962 kb on + strand, within LRK53_RS07985 at 1792.962 kb on + strand, within LRK53_RS07985 at 1792.962 kb on + strand, within LRK53_RS07985 at 1792.962 kb on + strand, within LRK53_RS07985 at 1792.962 kb on + strand, within LRK53_RS07985 at 1792.963 kb on - strand, within LRK53_RS07985 at 1792.963 kb on - strand, within LRK53_RS07985 at 1792.963 kb on - strand, within LRK53_RS07985 at 1792.963 kb on - strand, within LRK53_RS07985 at 1792.963 kb on - strand, within LRK53_RS07985 at 1793.174 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.210 kb on + strand at 1793.211 kb on - strand at 1793.211 kb on - strand at 1793.211 kb on - strand at 1793.237 kb on + strand at 1793.237 kb on + strand at 1793.237 kb on + strand at 1793.237 kb on + strand at 1793.237 kb on + strand at 1793.237 kb on + strand at 1793.237 kb on + strand at 1793.238 kb on - strand at 1793.238 kb on - strand at 1793.238 kb on - strand at 1793.238 kb on - strand at 1793.238 kb on - strand at 1793.238 kb on - strand at 1793.238 kb on - strand at 1793.238 kb on - strand at 1793.276 kb on + strand, within LRK53_RS07990 at 1793.327 kb on + strand, within LRK53_RS07990 at 1793.327 kb on + strand, within LRK53_RS07990 at 1793.327 kb on + strand, within LRK53_RS07990 at 1793.327 kb on + strand, within LRK53_RS07990 at 1793.328 kb on - strand, within LRK53_RS07990 at 1793.328 kb on - strand, within LRK53_RS07990 at 1793.328 kb on - strand, within LRK53_RS07990 at 1793.355 kb on + strand, within LRK53_RS07990 at 1793.355 kb on + strand, within LRK53_RS07990 at 1793.355 kb on + strand, within LRK53_RS07990 at 1793.356 kb on - strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.495 kb on + strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.496 kb on - strand, within LRK53_RS07990 at 1793.684 kb on + strand, within LRK53_RS07990 at 1793.684 kb on + strand, within LRK53_RS07990 at 1793.684 kb on + strand, within LRK53_RS07990 at 1793.684 kb on + strand, within LRK53_RS07990 at 1793.685 kb on - strand, within LRK53_RS07990 at 1793.685 kb on - strand, within LRK53_RS07990 at 1793.685 kb on - strand, within LRK53_RS07990 at 1793.685 kb on - strand, within LRK53_RS07990 at 1793.685 kb on - strand, within LRK53_RS07990 at 1793.685 kb on - strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.690 kb on + strand, within LRK53_RS07990 at 1793.691 kb on - strand, within LRK53_RS07990 at 1793.691 kb on - strand, within LRK53_RS07990 at 1793.691 kb on - strand, within LRK53_RS07990 at 1793.691 kb on - strand, within LRK53_RS07990 at 1793.691 kb on - strand, within LRK53_RS07990 at 1793.691 kb on - strand, within LRK53_RS07990 at 1793.691 kb on - strand, within LRK53_RS07990
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 1,791,561 + LRK53_RS07975 0.64 -1.4 1,791,621 + LRK53_RS07975 0.69 -0.4 1,791,622 - LRK53_RS07975 0.69 +1.6 1,791,915 + -0.1 1,791,915 + +0.1 1,791,915 + -0.7 1,791,915 + -1.4 1,791,915 + -1.1 1,791,915 + -0.9 1,791,915 + +0.4 1,791,915 + -1.0 1,791,915 + -0.6 1,791,915 + -0.5 1,791,915 + -0.1 1,791,915 + +0.1 1,791,915 + -0.6 1,791,916 - +1.6 1,791,916 - +0.1 1,791,916 - -0.5 1,791,916 - +0.1 1,791,916 - -2.3 1,791,916 - +0.4 1,791,916 - -1.3 1,791,916 - +0.3 1,791,916 - +0.0 1,791,916 - -0.6 1,791,916 - -0.2 1,791,923 + -0.3 1,792,100 + -0.2 1,792,100 + -0.1 1,792,100 + +0.2 1,792,100 + -0.0 1,792,101 - -0.7 1,792,101 - +0.1 1,792,101 - +0.0 1,792,217 + -2.9 1,792,218 - -0.1 1,792,256 - LRK53_RS07980 0.14 -0.3 1,792,657 + LRK53_RS07980 0.88 +0.7 1,792,658 - LRK53_RS07980 0.88 -0.3 1,792,658 - LRK53_RS07980 0.88 -2.1 1,792,658 - LRK53_RS07980 0.88 -0.4 1,792,962 + LRK53_RS07985 0.50 -0.5 1,792,962 + LRK53_RS07985 0.50 -0.3 1,792,962 + LRK53_RS07985 0.50 -0.5 1,792,962 + LRK53_RS07985 0.50 +0.1 1,792,962 + LRK53_RS07985 0.50 +0.1 1,792,962 + LRK53_RS07985 0.50 +1.1 1,792,962 + LRK53_RS07985 0.50 +0.4 1,792,963 - LRK53_RS07985 0.51 -0.9 1,792,963 - LRK53_RS07985 0.51 +0.1 1,792,963 - LRK53_RS07985 0.51 +0.1 1,792,963 - LRK53_RS07985 0.51 -0.7 1,792,963 - LRK53_RS07985 0.51 -1.9 1,793,174 + -0.3 1,793,210 + +0.3 1,793,210 + -0.3 1,793,210 + -1.3 1,793,210 + -0.8 1,793,210 + -0.8 1,793,210 + +0.6 1,793,210 + -1.2 1,793,210 + -1.0 1,793,210 + +1.1 1,793,210 + +2.1 1,793,210 + -1.5 1,793,210 + +0.6 1,793,210 + -0.7 1,793,210 + +1.1 1,793,210 + +0.1 1,793,211 - -1.0 1,793,211 - +1.1 1,793,211 - -0.5 1,793,237 + -0.9 1,793,237 + +0.6 1,793,237 + -0.5 1,793,237 + -0.8 1,793,237 + -1.3 1,793,237 + +0.2 1,793,237 + -0.9 1,793,238 - +0.5 1,793,238 - +0.6 1,793,238 - -0.0 1,793,238 - -0.3 1,793,238 - -0.3 1,793,238 - -2.3 1,793,238 - -1.1 1,793,238 - -0.3 1,793,276 + LRK53_RS07990 0.13 -0.3 1,793,327 + LRK53_RS07990 0.21 -0.2 1,793,327 + LRK53_RS07990 0.21 -0.3 1,793,327 + LRK53_RS07990 0.21 -0.3 1,793,327 + LRK53_RS07990 0.21 +0.9 1,793,328 - LRK53_RS07990 0.21 -0.9 1,793,328 - LRK53_RS07990 0.21 +0.5 1,793,328 - LRK53_RS07990 0.21 -1.4 1,793,355 + LRK53_RS07990 0.26 +0.0 1,793,355 + LRK53_RS07990 0.26 -0.9 1,793,355 + LRK53_RS07990 0.26 -0.4 1,793,356 - LRK53_RS07990 0.26 -0.1 1,793,495 + LRK53_RS07990 0.49 +0.6 1,793,495 + LRK53_RS07990 0.49 -2.3 1,793,495 + LRK53_RS07990 0.49 -0.5 1,793,495 + LRK53_RS07990 0.49 -0.3 1,793,495 + LRK53_RS07990 0.49 +0.0 1,793,495 + LRK53_RS07990 0.49 +0.6 1,793,495 + LRK53_RS07990 0.49 -0.7 1,793,495 + LRK53_RS07990 0.49 -0.5 1,793,495 + LRK53_RS07990 0.49 -1.9 1,793,495 + LRK53_RS07990 0.49 -0.7 1,793,495 + LRK53_RS07990 0.49 -1.1 1,793,495 + LRK53_RS07990 0.49 -1.1 1,793,495 + LRK53_RS07990 0.49 +0.8 1,793,495 + LRK53_RS07990 0.49 -0.0 1,793,495 + LRK53_RS07990 0.49 +0.5 1,793,496 - LRK53_RS07990 0.49 +1.1 1,793,496 - LRK53_RS07990 0.49 -1.2 1,793,496 - LRK53_RS07990 0.49 +1.2 1,793,496 - LRK53_RS07990 0.49 -1.2 1,793,496 - LRK53_RS07990 0.49 -0.2 1,793,496 - LRK53_RS07990 0.49 -1.1 1,793,496 - LRK53_RS07990 0.49 -0.3 1,793,496 - LRK53_RS07990 0.49 -1.3 1,793,496 - LRK53_RS07990 0.49 -1.3 1,793,496 - LRK53_RS07990 0.49 -0.3 1,793,684 + LRK53_RS07990 0.79 -1.3 1,793,684 + LRK53_RS07990 0.79 -0.5 1,793,684 + LRK53_RS07990 0.79 -2.0 1,793,684 + LRK53_RS07990 0.79 -0.7 1,793,685 - LRK53_RS07990 0.80 -0.5 1,793,685 - LRK53_RS07990 0.80 -0.5 1,793,685 - LRK53_RS07990 0.80 +0.2 1,793,685 - LRK53_RS07990 0.80 -0.5 1,793,685 - LRK53_RS07990 0.80 +0.4 1,793,685 - LRK53_RS07990 0.80 -0.2 1,793,690 + LRK53_RS07990 0.80 +1.9 1,793,690 + LRK53_RS07990 0.80 -0.9 1,793,690 + LRK53_RS07990 0.80 +3.1 1,793,690 + LRK53_RS07990 0.80 -0.4 1,793,690 + LRK53_RS07990 0.80 +0.3 1,793,690 + LRK53_RS07990 0.80 +1.4 1,793,690 + LRK53_RS07990 0.80 -1.5 1,793,690 + LRK53_RS07990 0.80 +0.1 1,793,690 + LRK53_RS07990 0.80 -0.6 1,793,691 - LRK53_RS07990 0.81 -0.3 1,793,691 - LRK53_RS07990 0.81 -1.7 1,793,691 - LRK53_RS07990 0.81 -1.9 1,793,691 - LRK53_RS07990 0.81 +0.1 1,793,691 - LRK53_RS07990 0.81 +0.9 1,793,691 - LRK53_RS07990 0.81 -1.5 1,793,691 - LRK53_RS07990 0.81 -0.5
Or see this region's nucleotide sequence