Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS07340 and LRK53_RS07345 are separated by 140 nucleotides LRK53_RS07345 and LRK53_RS07350 are separated by 78 nucleotides LRK53_RS07350 and LRK53_RS07355 are separated by 110 nucleotides
LRK53_RS07340: LRK53_RS07340 - hypothetical protein, at 1,647,496 to 1,648,590
_RS07340
LRK53_RS07345: LRK53_RS07345 - IS200/IS605 family transposase, at 1,648,731 to 1,649,162
_RS07345
LRK53_RS07350: LRK53_RS07350 - hypothetical protein, at 1,649,241 to 1,649,507
_RS07350
LRK53_RS07355: LRK53_RS07355 - N-formylglutamate deformylase, at 1,649,618 to 1,650,400
_RS07355
Position (kb) 1649
1650 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1648.283 kb on + strand, within LRK53_RS07340 at 1648.283 kb on + strand, within LRK53_RS07340 at 1648.284 kb on - strand, within LRK53_RS07340 at 1648.301 kb on + strand, within LRK53_RS07340 at 1648.302 kb on - strand, within LRK53_RS07340 at 1648.302 kb on - strand, within LRK53_RS07340 at 1648.601 kb on + strand at 1648.602 kb on - strand at 1648.602 kb on - strand at 1648.610 kb on - strand at 1648.610 kb on - strand at 1648.610 kb on - strand at 1648.610 kb on - strand at 1648.610 kb on - strand at 1648.931 kb on + strand, within LRK53_RS07345 at 1648.931 kb on + strand, within LRK53_RS07345 at 1648.931 kb on + strand, within LRK53_RS07345 at 1648.931 kb on + strand, within LRK53_RS07345 at 1649.242 kb on + strand at 1649.242 kb on + strand at 1649.242 kb on + strand at 1649.242 kb on + strand at 1649.242 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.267 kb on + strand at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.271 kb on + strand, within LRK53_RS07350 at 1649.353 kb on + strand, within LRK53_RS07350 at 1649.359 kb on + strand, within LRK53_RS07350 at 1649.359 kb on + strand, within LRK53_RS07350 at 1649.359 kb on + strand, within LRK53_RS07350 at 1649.359 kb on + strand, within LRK53_RS07350 at 1649.360 kb on - strand, within LRK53_RS07350 at 1649.360 kb on - strand, within LRK53_RS07350 at 1649.360 kb on - strand, within LRK53_RS07350 at 1649.493 kb on + strand at 1649.535 kb on + strand at 1649.535 kb on + strand at 1649.535 kb on + strand at 1649.535 kb on + strand at 1649.536 kb on - strand at 1649.536 kb on - strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.548 kb on + strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.549 kb on - strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.606 kb on + strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.607 kb on - strand at 1649.623 kb on + strand at 1649.624 kb on - strand at 1649.768 kb on + strand, within LRK53_RS07355 at 1649.769 kb on - strand, within LRK53_RS07355 at 1649.825 kb on + strand, within LRK53_RS07355 at 1649.826 kb on - strand, within LRK53_RS07355 at 1649.826 kb on - strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.927 kb on + strand, within LRK53_RS07355 at 1649.928 kb on - strand, within LRK53_RS07355 at 1649.928 kb on - strand, within LRK53_RS07355 at 1649.928 kb on - strand, within LRK53_RS07355 at 1649.928 kb on - strand, within LRK53_RS07355 at 1649.928 kb on - strand, within LRK53_RS07355 at 1649.993 kb on + strand, within LRK53_RS07355 at 1649.993 kb on + strand, within LRK53_RS07355 at 1649.993 kb on + strand, within LRK53_RS07355 at 1650.236 kb on + strand, within LRK53_RS07355 at 1650.236 kb on + strand, within LRK53_RS07355 at 1650.236 kb on + strand, within LRK53_RS07355 at 1650.237 kb on - strand, within LRK53_RS07355 at 1650.237 kb on - strand, within LRK53_RS07355 at 1650.237 kb on - strand, within LRK53_RS07355 at 1650.237 kb on - strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.308 kb on + strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.309 kb on - strand, within LRK53_RS07355 at 1650.408 kb on + strand at 1650.408 kb on + strand at 1650.408 kb on + strand at 1650.408 kb on + strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.409 kb on - strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.493 kb on + strand at 1650.494 kb on - strand at 1650.494 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 1,648,283 + LRK53_RS07340 0.72 +2.4 1,648,283 + LRK53_RS07340 0.72 -0.3 1,648,284 - LRK53_RS07340 0.72 -1.6 1,648,301 + LRK53_RS07340 0.74 -0.1 1,648,302 - LRK53_RS07340 0.74 +0.1 1,648,302 - LRK53_RS07340 0.74 -1.5 1,648,601 + +0.4 1,648,602 - -1.7 1,648,602 - +0.3 1,648,610 - -0.5 1,648,610 - +0.9 1,648,610 - -1.0 1,648,610 - -0.7 1,648,610 - -0.4 1,648,931 + LRK53_RS07345 0.46 +3.7 1,648,931 + LRK53_RS07345 0.46 -0.1 1,648,931 + LRK53_RS07345 0.46 -0.1 1,648,931 + LRK53_RS07345 0.46 +1.9 1,649,242 + -0.7 1,649,242 + -2.0 1,649,242 + +0.9 1,649,242 + +0.3 1,649,242 + +1.3 1,649,267 + -1.1 1,649,267 + -2.1 1,649,267 + -0.8 1,649,267 + -0.1 1,649,267 + +1.4 1,649,267 + -0.7 1,649,267 + +1.9 1,649,271 + LRK53_RS07350 0.11 -1.7 1,649,271 + LRK53_RS07350 0.11 -0.7 1,649,271 + LRK53_RS07350 0.11 +0.1 1,649,271 + LRK53_RS07350 0.11 -0.1 1,649,271 + LRK53_RS07350 0.11 -0.3 1,649,271 + LRK53_RS07350 0.11 +2.4 1,649,271 + LRK53_RS07350 0.11 -1.1 1,649,271 + LRK53_RS07350 0.11 -0.3 1,649,271 + LRK53_RS07350 0.11 +0.1 1,649,271 + LRK53_RS07350 0.11 +0.9 1,649,271 + LRK53_RS07350 0.11 -1.0 1,649,271 + LRK53_RS07350 0.11 +1.3 1,649,271 + LRK53_RS07350 0.11 +1.9 1,649,271 + LRK53_RS07350 0.11 -2.1 1,649,271 + LRK53_RS07350 0.11 -0.1 1,649,271 + LRK53_RS07350 0.11 +0.4 1,649,271 + LRK53_RS07350 0.11 +0.9 1,649,271 + LRK53_RS07350 0.11 +1.9 1,649,271 + LRK53_RS07350 0.11 +0.7 1,649,271 + LRK53_RS07350 0.11 -1.6 1,649,271 + LRK53_RS07350 0.11 -1.1 1,649,271 + LRK53_RS07350 0.11 +0.1 1,649,271 + LRK53_RS07350 0.11 -1.5 1,649,271 + LRK53_RS07350 0.11 +0.7 1,649,271 + LRK53_RS07350 0.11 +0.3 1,649,271 + LRK53_RS07350 0.11 -2.0 1,649,271 + LRK53_RS07350 0.11 -0.1 1,649,271 + LRK53_RS07350 0.11 +0.9 1,649,271 + LRK53_RS07350 0.11 -1.1 1,649,271 + LRK53_RS07350 0.11 -0.9 1,649,271 + LRK53_RS07350 0.11 +0.9 1,649,271 + LRK53_RS07350 0.11 -0.7 1,649,271 + LRK53_RS07350 0.11 +0.1 1,649,271 + LRK53_RS07350 0.11 -0.3 1,649,271 + LRK53_RS07350 0.11 -0.1 1,649,271 + LRK53_RS07350 0.11 -0.1 1,649,271 + LRK53_RS07350 0.11 +0.6 1,649,271 + LRK53_RS07350 0.11 +1.2 1,649,271 + LRK53_RS07350 0.11 -1.5 1,649,271 + LRK53_RS07350 0.11 -0.6 1,649,353 + LRK53_RS07350 0.42 +1.6 1,649,359 + LRK53_RS07350 0.44 -1.0 1,649,359 + LRK53_RS07350 0.44 -0.4 1,649,359 + LRK53_RS07350 0.44 +0.1 1,649,359 + LRK53_RS07350 0.44 -0.1 1,649,360 - LRK53_RS07350 0.45 -0.5 1,649,360 - LRK53_RS07350 0.45 -0.5 1,649,360 - LRK53_RS07350 0.45 -0.7 1,649,493 + -0.2 1,649,535 + -0.7 1,649,535 + -0.6 1,649,535 + +0.1 1,649,535 + +0.9 1,649,536 - +0.2 1,649,536 - -0.4 1,649,548 + -1.0 1,649,548 + +1.3 1,649,548 + +0.4 1,649,548 + +0.9 1,649,548 + -0.4 1,649,548 + +0.9 1,649,548 + -0.4 1,649,548 + -1.1 1,649,548 + -0.7 1,649,548 + -0.0 1,649,548 + +1.2 1,649,549 - -1.2 1,649,549 - -0.1 1,649,549 - -0.1 1,649,549 - -0.2 1,649,549 - -0.6 1,649,549 - -1.7 1,649,549 - +1.4 1,649,606 + -0.7 1,649,606 + -2.0 1,649,606 + +0.9 1,649,606 + -0.2 1,649,606 + -0.6 1,649,606 + +0.1 1,649,606 + -0.1 1,649,606 + -1.0 1,649,606 + +1.9 1,649,606 + -1.1 1,649,606 + +0.3 1,649,607 - +1.7 1,649,607 - +1.1 1,649,607 - -1.1 1,649,607 - -0.9 1,649,607 - +0.5 1,649,607 - -0.3 1,649,607 - +0.9 1,649,607 - +0.3 1,649,607 - +0.1 1,649,607 - +1.9 1,649,607 - +0.3 1,649,607 - -2.5 1,649,607 - -0.4 1,649,607 - +0.5 1,649,607 - -3.5 1,649,607 - +0.7 1,649,623 + -1.1 1,649,624 - +0.8 1,649,768 + LRK53_RS07355 0.19 -0.4 1,649,769 - LRK53_RS07355 0.19 -0.0 1,649,825 + LRK53_RS07355 0.26 +0.9 1,649,826 - LRK53_RS07355 0.27 +0.9 1,649,826 - LRK53_RS07355 0.27 -2.0 1,649,927 + LRK53_RS07355 0.39 +1.2 1,649,927 + LRK53_RS07355 0.39 -0.3 1,649,927 + LRK53_RS07355 0.39 +0.1 1,649,927 + LRK53_RS07355 0.39 -0.0 1,649,927 + LRK53_RS07355 0.39 -1.6 1,649,927 + LRK53_RS07355 0.39 -1.1 1,649,927 + LRK53_RS07355 0.39 -0.5 1,649,927 + LRK53_RS07355 0.39 -1.0 1,649,927 + LRK53_RS07355 0.39 -1.1 1,649,927 + LRK53_RS07355 0.39 -0.7 1,649,927 + LRK53_RS07355 0.39 +0.4 1,649,927 + LRK53_RS07355 0.39 -0.7 1,649,927 + LRK53_RS07355 0.39 +0.9 1,649,928 - LRK53_RS07355 0.40 -0.1 1,649,928 - LRK53_RS07355 0.40 -0.6 1,649,928 - LRK53_RS07355 0.40 -1.3 1,649,928 - LRK53_RS07355 0.40 +1.9 1,649,928 - LRK53_RS07355 0.40 -1.0 1,649,993 + LRK53_RS07355 0.48 +1.4 1,649,993 + LRK53_RS07355 0.48 +1.3 1,649,993 + LRK53_RS07355 0.48 -0.4 1,650,236 + LRK53_RS07355 0.79 -0.5 1,650,236 + LRK53_RS07355 0.79 -1.0 1,650,236 + LRK53_RS07355 0.79 -2.3 1,650,237 - LRK53_RS07355 0.79 +0.6 1,650,237 - LRK53_RS07355 0.79 +0.5 1,650,237 - LRK53_RS07355 0.79 -0.2 1,650,237 - LRK53_RS07355 0.79 -0.7 1,650,308 + LRK53_RS07355 0.88 +0.9 1,650,308 + LRK53_RS07355 0.88 +0.1 1,650,308 + LRK53_RS07355 0.88 +0.1 1,650,308 + LRK53_RS07355 0.88 -0.4 1,650,308 + LRK53_RS07355 0.88 -0.1 1,650,308 + LRK53_RS07355 0.88 +0.9 1,650,308 + LRK53_RS07355 0.88 -0.1 1,650,308 + LRK53_RS07355 0.88 -0.5 1,650,308 + LRK53_RS07355 0.88 -1.1 1,650,308 + LRK53_RS07355 0.88 +1.9 1,650,308 + LRK53_RS07355 0.88 -1.0 1,650,308 + LRK53_RS07355 0.88 -1.2 1,650,308 + LRK53_RS07355 0.88 -0.2 1,650,308 + LRK53_RS07355 0.88 -1.7 1,650,308 + LRK53_RS07355 0.88 -0.1 1,650,308 + LRK53_RS07355 0.88 -0.1 1,650,309 - LRK53_RS07355 0.88 -1.4 1,650,309 - LRK53_RS07355 0.88 +0.9 1,650,309 - LRK53_RS07355 0.88 -0.4 1,650,309 - LRK53_RS07355 0.88 -2.6 1,650,309 - LRK53_RS07355 0.88 -1.6 1,650,309 - LRK53_RS07355 0.88 +0.9 1,650,309 - LRK53_RS07355 0.88 -0.7 1,650,309 - LRK53_RS07355 0.88 +1.3 1,650,309 - LRK53_RS07355 0.88 +1.9 1,650,408 + -1.5 1,650,408 + +0.3 1,650,408 + -0.7 1,650,408 + -1.5 1,650,409 - -1.0 1,650,409 - -2.5 1,650,409 - -1.6 1,650,409 - -0.1 1,650,409 - +0.3 1,650,409 - -1.5 1,650,409 - +0.1 1,650,409 - +2.9 1,650,493 + +0.9 1,650,493 + -0.2 1,650,493 + +0.3 1,650,493 + +0.9 1,650,493 + +0.9 1,650,493 + +0.4 1,650,494 - -0.8 1,650,494 - -0.7
Or see this region's nucleotide sequence