Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05660

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05650 and LRK53_RS05655 overlap by 4 nucleotidesLRK53_RS05655 and LRK53_RS05660 are separated by 4 nucleotidesLRK53_RS05660 and LRK53_RS05665 are separated by 214 nucleotides LRK53_RS05650: LRK53_RS05650 - pyridoxamine 5'-phosphate oxidase, at 1,313,856 to 1,314,443 _RS05650 LRK53_RS05655: LRK53_RS05655 - secondary thiamine-phosphate synthase enzyme YjbQ, at 1,314,440 to 1,314,880 _RS05655 LRK53_RS05660: LRK53_RS05660 - cobalamin-binding protein, at 1,314,885 to 1,315,709 _RS05660 LRK53_RS05665: LRK53_RS05665 - IS4 family transposase, at 1,315,924 to 1,317,096 _RS05665 Position (kb) 1314 1315 1316Strain fitness (log2 ratio) -2 -1 0 1 2at 1314.778 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.815 kb on + strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.816 kb on - strand, within LRK53_RS05655at 1314.972 kb on + strand, within LRK53_RS05660at 1314.972 kb on + strand, within LRK53_RS05660at 1314.973 kb on - strand, within LRK53_RS05660at 1315.218 kb on + strand, within LRK53_RS05660at 1315.218 kb on + strand, within LRK53_RS05660at 1315.218 kb on + strand, within LRK53_RS05660at 1315.218 kb on + strand, within LRK53_RS05660at 1315.219 kb on - strand, within LRK53_RS05660at 1315.219 kb on - strand, within LRK53_RS05660at 1315.219 kb on - strand, within LRK53_RS05660at 1315.219 kb on - strand, within LRK53_RS05660at 1315.219 kb on - strand, within LRK53_RS05660at 1315.269 kb on + strand, within LRK53_RS05660at 1315.269 kb on + strand, within LRK53_RS05660at 1315.269 kb on + strand, within LRK53_RS05660at 1315.270 kb on - strand, within LRK53_RS05660at 1315.270 kb on - strand, within LRK53_RS05660at 1315.270 kb on - strand, within LRK53_RS05660at 1315.270 kb on - strand, within LRK53_RS05660at 1315.292 kb on + strand, within LRK53_RS05660at 1315.292 kb on + strand, within LRK53_RS05660at 1315.293 kb on - strand, within LRK53_RS05660at 1315.293 kb on - strand, within LRK53_RS05660at 1315.344 kb on + strand, within LRK53_RS05660at 1315.344 kb on + strand, within LRK53_RS05660at 1315.344 kb on + strand, within LRK53_RS05660at 1315.344 kb on + strand, within LRK53_RS05660at 1315.344 kb on + strand, within LRK53_RS05660at 1315.345 kb on - strand, within LRK53_RS05660at 1315.345 kb on - strand, within LRK53_RS05660at 1315.345 kb on - strand, within LRK53_RS05660at 1315.466 kb on + strand, within LRK53_RS05660at 1315.466 kb on + strand, within LRK53_RS05660at 1315.466 kb on + strand, within LRK53_RS05660at 1315.466 kb on + strand, within LRK53_RS05660at 1315.467 kb on - strand, within LRK53_RS05660at 1315.467 kb on - strand, within LRK53_RS05660at 1315.467 kb on - strand, within LRK53_RS05660at 1315.467 kb on - strand, within LRK53_RS05660at 1315.467 kb on - strand, within LRK53_RS05660at 1315.467 kb on - strand, within LRK53_RS05660at 1315.467 kb on - strand, within LRK53_RS05660at 1315.732 kb on + strandat 1315.733 kb on - strandat 1315.733 kb on - strandat 1315.733 kb on - strandat 1315.733 kb on - strandat 1315.821 kb on + strandat 1315.821 kb on + strandat 1315.878 kb on - strandat 1315.878 kb on - strandat 1315.915 kb on - strandat 1315.937 kb on - strandat 1315.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,314,778 + LRK53_RS05655 0.77 +0.4
1,314,815 + LRK53_RS05655 0.85 -1.3
1,314,815 + LRK53_RS05655 0.85 -2.6
1,314,815 + LRK53_RS05655 0.85 -0.9
1,314,815 + LRK53_RS05655 0.85 +0.1
1,314,815 + LRK53_RS05655 0.85 +1.0
1,314,815 + LRK53_RS05655 0.85 -2.0
1,314,815 + LRK53_RS05655 0.85 +1.0
1,314,815 + LRK53_RS05655 0.85 +0.1
1,314,815 + LRK53_RS05655 0.85 -2.1
1,314,815 + LRK53_RS05655 0.85 -1.3
1,314,815 + LRK53_RS05655 0.85 -1.0
1,314,815 + LRK53_RS05655 0.85 +0.9
1,314,815 + LRK53_RS05655 0.85 -0.7
1,314,815 + LRK53_RS05655 0.85 -0.4
1,314,815 + LRK53_RS05655 0.85 +0.8
1,314,815 + LRK53_RS05655 0.85 +0.0
1,314,815 + LRK53_RS05655 0.85 +0.6
1,314,815 + LRK53_RS05655 0.85 -2.3
1,314,815 + LRK53_RS05655 0.85 -0.6
1,314,815 + LRK53_RS05655 0.85 -0.3
1,314,815 + LRK53_RS05655 0.85 +0.0
1,314,815 + LRK53_RS05655 0.85 +0.5
1,314,815 + LRK53_RS05655 0.85 +0.2
1,314,815 + LRK53_RS05655 0.85 +2.6
1,314,815 + LRK53_RS05655 0.85 -0.0
1,314,815 + LRK53_RS05655 0.85 -0.3
1,314,815 + LRK53_RS05655 0.85 -0.8
1,314,815 + LRK53_RS05655 0.85 -1.3
1,314,816 - LRK53_RS05655 0.85 -0.4
1,314,816 - LRK53_RS05655 0.85 +0.1
1,314,816 - LRK53_RS05655 0.85 -0.1
1,314,816 - LRK53_RS05655 0.85 +1.0
1,314,816 - LRK53_RS05655 0.85 -0.6
1,314,816 - LRK53_RS05655 0.85 -0.1
1,314,816 - LRK53_RS05655 0.85 +0.4
1,314,816 - LRK53_RS05655 0.85 +2.0
1,314,816 - LRK53_RS05655 0.85 -0.1
1,314,816 - LRK53_RS05655 0.85 -2.0
1,314,816 - LRK53_RS05655 0.85 -1.0
1,314,816 - LRK53_RS05655 0.85 +0.0
1,314,816 - LRK53_RS05655 0.85 -2.1
1,314,816 - LRK53_RS05655 0.85 +0.2
1,314,816 - LRK53_RS05655 0.85 +0.7
1,314,816 - LRK53_RS05655 0.85 -0.7
1,314,816 - LRK53_RS05655 0.85 -0.9
1,314,816 - LRK53_RS05655 0.85 -0.6
1,314,816 - LRK53_RS05655 0.85 +0.2
1,314,816 - LRK53_RS05655 0.85 +0.0
1,314,816 - LRK53_RS05655 0.85 -1.4
1,314,816 - LRK53_RS05655 0.85 -1.0
1,314,816 - LRK53_RS05655 0.85 -1.3
1,314,972 + LRK53_RS05660 0.11 -0.6
1,314,972 + LRK53_RS05660 0.11 -0.9
1,314,973 - LRK53_RS05660 0.11 +0.4
1,315,218 + LRK53_RS05660 0.40 -1.0
1,315,218 + LRK53_RS05660 0.40 -1.8
1,315,218 + LRK53_RS05660 0.40 -1.6
1,315,218 + LRK53_RS05660 0.40 -0.3
1,315,219 - LRK53_RS05660 0.40 -2.1
1,315,219 - LRK53_RS05660 0.40 -0.5
1,315,219 - LRK53_RS05660 0.40 -1.1
1,315,219 - LRK53_RS05660 0.40 +0.4
1,315,219 - LRK53_RS05660 0.40 -0.9
1,315,269 + LRK53_RS05660 0.47 +0.4
1,315,269 + LRK53_RS05660 0.47 +0.0
1,315,269 + LRK53_RS05660 0.47 +2.0
1,315,270 - LRK53_RS05660 0.47 -0.6
1,315,270 - LRK53_RS05660 0.47 -0.9
1,315,270 - LRK53_RS05660 0.47 -1.2
1,315,270 - LRK53_RS05660 0.47 +0.3
1,315,292 + LRK53_RS05660 0.49 -1.0
1,315,292 + LRK53_RS05660 0.49 -0.2
1,315,293 - LRK53_RS05660 0.49 -1.3
1,315,293 - LRK53_RS05660 0.49 -0.6
1,315,344 + LRK53_RS05660 0.56 -1.3
1,315,344 + LRK53_RS05660 0.56 -0.5
1,315,344 + LRK53_RS05660 0.56 -1.7
1,315,344 + LRK53_RS05660 0.56 +1.0
1,315,344 + LRK53_RS05660 0.56 -1.3
1,315,345 - LRK53_RS05660 0.56 -1.6
1,315,345 - LRK53_RS05660 0.56 +1.0
1,315,345 - LRK53_RS05660 0.56 +1.0
1,315,466 + LRK53_RS05660 0.70 -2.0
1,315,466 + LRK53_RS05660 0.70 -2.1
1,315,466 + LRK53_RS05660 0.70 -1.2
1,315,466 + LRK53_RS05660 0.70 +0.0
1,315,467 - LRK53_RS05660 0.71 -0.3
1,315,467 - LRK53_RS05660 0.71 +0.0
1,315,467 - LRK53_RS05660 0.71 -2.3
1,315,467 - LRK53_RS05660 0.71 +0.7
1,315,467 - LRK53_RS05660 0.71 -0.3
1,315,467 - LRK53_RS05660 0.71 +1.0
1,315,467 - LRK53_RS05660 0.71 -1.0
1,315,732 + +0.2
1,315,733 - -2.3
1,315,733 - -0.3
1,315,733 - +0.8
1,315,733 - +1.0
1,315,821 + -2.3
1,315,821 + +0.7
1,315,878 - -0.9
1,315,878 - +0.0
1,315,915 - +0.8
1,315,937 - -0.2
1,315,937 - -0.8

Or see this region's nucleotide sequence