Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05220

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05215 and LRK53_RS05220 overlap by 4 nucleotidesLRK53_RS05220 and LRK53_RS05225 are separated by 28 nucleotides LRK53_RS05215: LRK53_RS05215 - VTT domain-containing protein, at 1,222,887 to 1,223,609 _RS05215 LRK53_RS05220: LRK53_RS05220 - nucleoside deaminase, at 1,223,606 to 1,224,166 _RS05220 LRK53_RS05225: LRK53_RS05225 - glutamine--tRNA ligase/YqeY domain fusion protein, at 1,224,195 to 1,225,970 _RS05225 Position (kb) 1223 1224 1225Strain fitness (log2 ratio) -2 -1 0 1 2at 1222.614 kb on + strandat 1222.614 kb on + strandat 1222.614 kb on + strandat 1222.614 kb on + strandat 1222.614 kb on + strandat 1222.615 kb on - strandat 1222.615 kb on - strandat 1222.615 kb on - strandat 1222.615 kb on - strandat 1222.615 kb on - strandat 1222.615 kb on - strandat 1222.636 kb on + strandat 1222.636 kb on + strandat 1222.636 kb on + strandat 1222.637 kb on - strandat 1222.637 kb on - strandat 1222.637 kb on - strandat 1222.637 kb on - strandat 1222.637 kb on - strandat 1222.637 kb on - strandat 1222.670 kb on - strandat 1222.706 kb on + strandat 1222.706 kb on + strandat 1222.706 kb on + strandat 1222.706 kb on + strandat 1222.706 kb on + strandat 1222.706 kb on + strandat 1222.706 kb on + strandat 1222.706 kb on + strandat 1222.706 kb on + strandat 1222.707 kb on - strandat 1222.707 kb on - strandat 1222.707 kb on - strandat 1222.707 kb on - strandat 1222.707 kb on - strandat 1222.707 kb on - strandat 1222.707 kb on - strandat 1222.730 kb on + strandat 1222.730 kb on + strandat 1222.730 kb on + strandat 1222.730 kb on + strandat 1222.730 kb on + strandat 1222.730 kb on + strandat 1222.731 kb on - strandat 1222.731 kb on - strandat 1222.942 kb on - strandat 1223.206 kb on + strand, within LRK53_RS05215at 1223.206 kb on + strand, within LRK53_RS05215at 1223.206 kb on + strand, within LRK53_RS05215at 1223.206 kb on + strand, within LRK53_RS05215at 1223.206 kb on + strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.207 kb on - strand, within LRK53_RS05215at 1223.302 kb on + strand, within LRK53_RS05215at 1223.302 kb on + strand, within LRK53_RS05215at 1223.302 kb on + strand, within LRK53_RS05215at 1223.303 kb on - strand, within LRK53_RS05215at 1223.303 kb on - strand, within LRK53_RS05215at 1223.303 kb on - strand, within LRK53_RS05215at 1223.443 kb on + strand, within LRK53_RS05215at 1223.443 kb on + strand, within LRK53_RS05215at 1223.444 kb on - strand, within LRK53_RS05215at 1223.444 kb on - strand, within LRK53_RS05215at 1223.444 kb on - strand, within LRK53_RS05215at 1223.444 kb on - strand, within LRK53_RS05215at 1223.444 kb on - strand, within LRK53_RS05215at 1223.444 kb on - strand, within LRK53_RS05215at 1223.444 kb on - strand, within LRK53_RS05215at 1223.444 kb on - strand, within LRK53_RS05215at 1223.631 kb on + strandat 1223.856 kb on + strand, within LRK53_RS05220at 1223.857 kb on - strand, within LRK53_RS05220at 1223.857 kb on - strand, within LRK53_RS05220at 1224.042 kb on - strand, within LRK53_RS05220at 1224.042 kb on - strand, within LRK53_RS05220at 1224.197 kb on - strandat 1224.197 kb on - strandat 1224.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,222,614 + +2.6
1,222,614 + -0.5
1,222,614 + +1.0
1,222,614 + -0.8
1,222,614 + -0.3
1,222,615 - -0.3
1,222,615 - -0.2
1,222,615 - +1.0
1,222,615 - -0.5
1,222,615 - -1.1
1,222,615 - -0.5
1,222,636 + +1.0
1,222,636 + -1.4
1,222,636 + -1.1
1,222,637 - +1.0
1,222,637 - -0.2
1,222,637 - -0.3
1,222,637 - -0.6
1,222,637 - +1.3
1,222,637 - -1.8
1,222,670 - +0.3
1,222,706 + -0.5
1,222,706 + +0.7
1,222,706 + +0.0
1,222,706 + -0.5
1,222,706 + -1.8
1,222,706 + -2.0
1,222,706 + -0.5
1,222,706 + +2.0
1,222,706 + +1.3
1,222,707 - -0.3
1,222,707 - -0.8
1,222,707 - -0.5
1,222,707 - +0.5
1,222,707 - +0.0
1,222,707 - -2.3
1,222,707 - -2.3
1,222,730 + +2.0
1,222,730 + +1.3
1,222,730 + -1.6
1,222,730 + -1.8
1,222,730 + +1.0
1,222,730 + -0.5
1,222,731 - -0.1
1,222,731 - -0.3
1,222,942 - +0.2
1,223,206 + LRK53_RS05215 0.44 -1.0
1,223,206 + LRK53_RS05215 0.44 +0.6
1,223,206 + LRK53_RS05215 0.44 -0.1
1,223,206 + LRK53_RS05215 0.44 -1.3
1,223,206 + LRK53_RS05215 0.44 +0.0
1,223,207 - LRK53_RS05215 0.44 -1.5
1,223,207 - LRK53_RS05215 0.44 -1.5
1,223,207 - LRK53_RS05215 0.44 +0.5
1,223,207 - LRK53_RS05215 0.44 -2.3
1,223,207 - LRK53_RS05215 0.44 +1.0
1,223,207 - LRK53_RS05215 0.44 +0.6
1,223,207 - LRK53_RS05215 0.44 -1.4
1,223,207 - LRK53_RS05215 0.44 -0.4
1,223,207 - LRK53_RS05215 0.44 +1.0
1,223,207 - LRK53_RS05215 0.44 -1.3
1,223,302 + LRK53_RS05215 0.57 -0.2
1,223,302 + LRK53_RS05215 0.57 -1.4
1,223,302 + LRK53_RS05215 0.57 -1.2
1,223,303 - LRK53_RS05215 0.58 +0.3
1,223,303 - LRK53_RS05215 0.58 +0.3
1,223,303 - LRK53_RS05215 0.58 +0.0
1,223,443 + LRK53_RS05215 0.77 +0.2
1,223,443 + LRK53_RS05215 0.77 +0.0
1,223,444 - LRK53_RS05215 0.77 -0.2
1,223,444 - LRK53_RS05215 0.77 -0.1
1,223,444 - LRK53_RS05215 0.77 -0.1
1,223,444 - LRK53_RS05215 0.77 +1.0
1,223,444 - LRK53_RS05215 0.77 +2.5
1,223,444 - LRK53_RS05215 0.77 -0.5
1,223,444 - LRK53_RS05215 0.77 -0.8
1,223,444 - LRK53_RS05215 0.77 +1.0
1,223,631 + +1.0
1,223,856 + LRK53_RS05220 0.45 -1.0
1,223,857 - LRK53_RS05220 0.45 -1.3
1,223,857 - LRK53_RS05220 0.45 -0.5
1,224,042 - LRK53_RS05220 0.78 -1.0
1,224,042 - LRK53_RS05220 0.78 -0.5
1,224,197 - -1.0
1,224,197 - +2.0
1,224,197 - -0.8

Or see this region's nucleotide sequence