Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05110

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05100 and LRK53_RS05105 are separated by 49 nucleotidesLRK53_RS05105 and LRK53_RS05110 are separated by 98 nucleotidesLRK53_RS05110 and LRK53_RS05115 are separated by 139 nucleotidesLRK53_RS05115 and LRK53_RS05120 are separated by 34 nucleotides LRK53_RS05100: LRK53_RS05100 - aspartate--tRNA ligase, at 1,200,937 to 1,202,700 _RS05100 LRK53_RS05105: LRK53_RS05105 - alpha/beta hydrolase, at 1,202,750 to 1,203,421 _RS05105 LRK53_RS05110: LRK53_RS05110 - YebC/PmpR family DNA-binding transcriptional regulator, at 1,203,520 to 1,204,248 _RS05110 LRK53_RS05115: LRK53_RS05115 - crossover junction endodeoxyribonuclease RuvC, at 1,204,388 to 1,204,906 _RS05115 LRK53_RS05120: LRK53_RS05120 - Holliday junction branch migration protein RuvA, at 1,204,941 to 1,205,537 _RS05120 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1202.772 kb on - strandat 1202.894 kb on + strand, within LRK53_RS05105at 1202.894 kb on + strand, within LRK53_RS05105at 1202.894 kb on + strand, within LRK53_RS05105at 1202.895 kb on - strand, within LRK53_RS05105at 1202.895 kb on - strand, within LRK53_RS05105at 1202.895 kb on - strand, within LRK53_RS05105at 1202.947 kb on + strand, within LRK53_RS05105at 1202.947 kb on + strand, within LRK53_RS05105at 1202.947 kb on + strand, within LRK53_RS05105at 1202.947 kb on + strand, within LRK53_RS05105at 1202.948 kb on - strand, within LRK53_RS05105at 1202.948 kb on - strand, within LRK53_RS05105at 1203.337 kb on + strand, within LRK53_RS05105at 1203.337 kb on + strand, within LRK53_RS05105at 1203.338 kb on - strand, within LRK53_RS05105at 1203.526 kb on - strandat 1203.606 kb on + strand, within LRK53_RS05110at 1203.606 kb on + strand, within LRK53_RS05110at 1203.607 kb on - strand, within LRK53_RS05110at 1203.607 kb on - strand, within LRK53_RS05110at 1203.854 kb on - strand, within LRK53_RS05110at 1204.323 kb on + strandat 1204.323 kb on + strandat 1204.323 kb on + strandat 1204.323 kb on + strandat 1204.323 kb on + strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strandat 1204.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,202,772 - -1.9
1,202,894 + LRK53_RS05105 0.21 -2.1
1,202,894 + LRK53_RS05105 0.21 -0.9
1,202,894 + LRK53_RS05105 0.21 +0.2
1,202,895 - LRK53_RS05105 0.22 +0.2
1,202,895 - LRK53_RS05105 0.22 -0.4
1,202,895 - LRK53_RS05105 0.22 +1.0
1,202,947 + LRK53_RS05105 0.29 -1.4
1,202,947 + LRK53_RS05105 0.29 -1.0
1,202,947 + LRK53_RS05105 0.29 +1.6
1,202,947 + LRK53_RS05105 0.29 -0.8
1,202,948 - LRK53_RS05105 0.29 -0.5
1,202,948 - LRK53_RS05105 0.29 +0.0
1,203,337 + LRK53_RS05105 0.87 -0.5
1,203,337 + LRK53_RS05105 0.87 -1.2
1,203,338 - LRK53_RS05105 0.88 -0.3
1,203,526 - -2.3
1,203,606 + LRK53_RS05110 0.12 +1.0
1,203,606 + LRK53_RS05110 0.12 -1.0
1,203,607 - LRK53_RS05110 0.12 -0.7
1,203,607 - LRK53_RS05110 0.12 -0.6
1,203,854 - LRK53_RS05110 0.46 -2.1
1,204,323 + +3.0
1,204,323 + +0.3
1,204,323 + -0.3
1,204,323 + -0.7
1,204,323 + -1.3
1,204,324 - -1.2
1,204,324 - -1.5
1,204,324 - +0.4
1,204,324 - -2.0
1,204,324 - +0.2
1,204,324 - -0.1
1,204,324 - +0.2
1,204,324 - -1.0
1,204,324 - -2.1
1,204,324 - +0.1
1,204,324 - -0.8
1,204,324 - -1.1

Or see this region's nucleotide sequence