Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05100 and LRK53_RS05105 are separated by 49 nucleotides LRK53_RS05105 and LRK53_RS05110 are separated by 98 nucleotides LRK53_RS05110 and LRK53_RS05115 are separated by 139 nucleotides LRK53_RS05115 and LRK53_RS05120 are separated by 34 nucleotides
LRK53_RS05100: LRK53_RS05100 - aspartate--tRNA ligase, at 1,200,937 to 1,202,700
_RS05100
LRK53_RS05105: LRK53_RS05105 - alpha/beta hydrolase, at 1,202,750 to 1,203,421
_RS05105
LRK53_RS05110: LRK53_RS05110 - YebC/PmpR family DNA-binding transcriptional regulator, at 1,203,520 to 1,204,248
_RS05110
LRK53_RS05115: LRK53_RS05115 - crossover junction endodeoxyribonuclease RuvC, at 1,204,388 to 1,204,906
_RS05115
LRK53_RS05120: LRK53_RS05120 - Holliday junction branch migration protein RuvA, at 1,204,941 to 1,205,537
_RS05120
Position (kb)
1203
1204
1205 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1202.772 kb on - strand at 1202.894 kb on + strand, within LRK53_RS05105 at 1202.894 kb on + strand, within LRK53_RS05105 at 1202.894 kb on + strand, within LRK53_RS05105 at 1202.895 kb on - strand, within LRK53_RS05105 at 1202.895 kb on - strand, within LRK53_RS05105 at 1202.895 kb on - strand, within LRK53_RS05105 at 1202.947 kb on + strand, within LRK53_RS05105 at 1202.947 kb on + strand, within LRK53_RS05105 at 1202.947 kb on + strand, within LRK53_RS05105 at 1202.947 kb on + strand, within LRK53_RS05105 at 1202.948 kb on - strand, within LRK53_RS05105 at 1202.948 kb on - strand, within LRK53_RS05105 at 1203.337 kb on + strand, within LRK53_RS05105 at 1203.337 kb on + strand, within LRK53_RS05105 at 1203.338 kb on - strand, within LRK53_RS05105 at 1203.526 kb on - strand at 1203.606 kb on + strand, within LRK53_RS05110 at 1203.606 kb on + strand, within LRK53_RS05110 at 1203.607 kb on - strand, within LRK53_RS05110 at 1203.607 kb on - strand, within LRK53_RS05110 at 1203.854 kb on - strand, within LRK53_RS05110 at 1204.323 kb on + strand at 1204.323 kb on + strand at 1204.323 kb on + strand at 1204.323 kb on + strand at 1204.323 kb on + strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand at 1204.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 1,202,772 - -1.9 1,202,894 + LRK53_RS05105 0.21 -2.1 1,202,894 + LRK53_RS05105 0.21 -0.9 1,202,894 + LRK53_RS05105 0.21 +0.2 1,202,895 - LRK53_RS05105 0.22 +0.2 1,202,895 - LRK53_RS05105 0.22 -0.4 1,202,895 - LRK53_RS05105 0.22 +1.0 1,202,947 + LRK53_RS05105 0.29 -1.4 1,202,947 + LRK53_RS05105 0.29 -1.0 1,202,947 + LRK53_RS05105 0.29 +1.6 1,202,947 + LRK53_RS05105 0.29 -0.8 1,202,948 - LRK53_RS05105 0.29 -0.5 1,202,948 - LRK53_RS05105 0.29 +0.0 1,203,337 + LRK53_RS05105 0.87 -0.5 1,203,337 + LRK53_RS05105 0.87 -1.2 1,203,338 - LRK53_RS05105 0.88 -0.3 1,203,526 - -2.3 1,203,606 + LRK53_RS05110 0.12 +1.0 1,203,606 + LRK53_RS05110 0.12 -1.0 1,203,607 - LRK53_RS05110 0.12 -0.7 1,203,607 - LRK53_RS05110 0.12 -0.6 1,203,854 - LRK53_RS05110 0.46 -2.1 1,204,323 + +3.0 1,204,323 + +0.3 1,204,323 + -0.3 1,204,323 + -0.7 1,204,323 + -1.3 1,204,324 - -1.2 1,204,324 - -1.5 1,204,324 - +0.4 1,204,324 - -2.0 1,204,324 - +0.2 1,204,324 - -0.1 1,204,324 - +0.2 1,204,324 - -1.0 1,204,324 - -2.1 1,204,324 - +0.1 1,204,324 - -0.8 1,204,324 - -1.1
Or see this region's nucleotide sequence