Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04890

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04885 and LRK53_RS04890 overlap by 4 nucleotidesLRK53_RS04890 and LRK53_RS04895 overlap by 7 nucleotidesLRK53_RS04895 and LRK53_RS04900 are separated by 37 nucleotides LRK53_RS04885: LRK53_RS04885 - galactonate dehydratase, at 1,135,556 to 1,136,704 _RS04885 LRK53_RS04890: LRK53_RS04890 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 1,136,701 to 1,137,345 _RS04890 LRK53_RS04895: LRK53_RS04895 - 2-dehydro-3-deoxygalactonokinase, at 1,137,339 to 1,138,283 _RS04895 LRK53_RS04900: LRK53_RS04900 - beta-galactosidase, at 1,138,321 to 1,140,429 _RS04900 Position (kb) 1136 1137 1138Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1135.701 kb on + strand, within LRK53_RS04885at 1135.701 kb on + strand, within LRK53_RS04885at 1135.701 kb on + strand, within LRK53_RS04885at 1135.702 kb on - strand, within LRK53_RS04885at 1135.702 kb on - strand, within LRK53_RS04885at 1135.702 kb on - strand, within LRK53_RS04885at 1135.702 kb on - strand, within LRK53_RS04885at 1135.702 kb on - strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.709 kb on + strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.710 kb on - strand, within LRK53_RS04885at 1135.728 kb on + strand, within LRK53_RS04885at 1135.728 kb on + strand, within LRK53_RS04885at 1135.728 kb on + strand, within LRK53_RS04885at 1135.728 kb on + strand, within LRK53_RS04885at 1135.728 kb on + strand, within LRK53_RS04885at 1135.728 kb on + strand, within LRK53_RS04885at 1135.729 kb on - strand, within LRK53_RS04885at 1135.729 kb on - strand, within LRK53_RS04885at 1135.729 kb on - strand, within LRK53_RS04885at 1135.729 kb on - strand, within LRK53_RS04885at 1135.729 kb on - strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.755 kb on + strand, within LRK53_RS04885at 1135.756 kb on - strand, within LRK53_RS04885at 1135.756 kb on - strand, within LRK53_RS04885at 1135.872 kb on + strand, within LRK53_RS04885at 1135.872 kb on + strand, within LRK53_RS04885at 1135.872 kb on + strand, within LRK53_RS04885at 1135.872 kb on + strand, within LRK53_RS04885at 1135.872 kb on + strand, within LRK53_RS04885at 1135.873 kb on - strand, within LRK53_RS04885at 1135.873 kb on - strand, within LRK53_RS04885at 1135.873 kb on - strand, within LRK53_RS04885at 1135.873 kb on - strand, within LRK53_RS04885at 1135.983 kb on + strand, within LRK53_RS04885at 1135.984 kb on - strand, within LRK53_RS04885at 1135.984 kb on - strand, within LRK53_RS04885at 1135.984 kb on - strand, within LRK53_RS04885at 1135.990 kb on + strand, within LRK53_RS04885at 1135.990 kb on + strand, within LRK53_RS04885at 1135.991 kb on - strand, within LRK53_RS04885at 1135.991 kb on - strand, within LRK53_RS04885at 1135.991 kb on - strand, within LRK53_RS04885at 1135.992 kb on + strand, within LRK53_RS04885at 1135.992 kb on + strand, within LRK53_RS04885at 1135.992 kb on + strand, within LRK53_RS04885at 1135.993 kb on - strand, within LRK53_RS04885at 1135.993 kb on - strand, within LRK53_RS04885at 1135.993 kb on - strand, within LRK53_RS04885at 1135.993 kb on - strand, within LRK53_RS04885at 1136.029 kb on + strand, within LRK53_RS04885at 1136.029 kb on + strand, within LRK53_RS04885at 1136.030 kb on - strand, within LRK53_RS04885at 1136.097 kb on + strand, within LRK53_RS04885at 1136.097 kb on + strand, within LRK53_RS04885at 1136.097 kb on + strand, within LRK53_RS04885at 1136.098 kb on - strand, within LRK53_RS04885at 1136.098 kb on - strand, within LRK53_RS04885at 1136.120 kb on + strand, within LRK53_RS04885at 1136.120 kb on + strand, within LRK53_RS04885at 1136.120 kb on + strand, within LRK53_RS04885at 1136.120 kb on + strand, within LRK53_RS04885at 1136.121 kb on - strand, within LRK53_RS04885at 1136.121 kb on - strand, within LRK53_RS04885at 1136.121 kb on - strand, within LRK53_RS04885at 1136.121 kb on - strand, within LRK53_RS04885at 1136.121 kb on - strand, within LRK53_RS04885at 1136.121 kb on - strand, within LRK53_RS04885at 1136.355 kb on + strand, within LRK53_RS04885at 1136.355 kb on + strand, within LRK53_RS04885at 1136.355 kb on + strand, within LRK53_RS04885at 1136.355 kb on + strand, within LRK53_RS04885at 1136.355 kb on + strand, within LRK53_RS04885at 1136.355 kb on + strand, within LRK53_RS04885at 1136.355 kb on + strand, within LRK53_RS04885at 1136.355 kb on + strand, within LRK53_RS04885at 1136.356 kb on - strand, within LRK53_RS04885at 1136.365 kb on + strand, within LRK53_RS04885at 1136.366 kb on - strand, within LRK53_RS04885at 1136.388 kb on - strand, within LRK53_RS04885at 1136.487 kb on + strand, within LRK53_RS04885at 1136.487 kb on + strand, within LRK53_RS04885at 1136.488 kb on - strand, within LRK53_RS04885at 1136.488 kb on - strand, within LRK53_RS04885at 1136.502 kb on + strand, within LRK53_RS04885at 1136.502 kb on + strand, within LRK53_RS04885at 1136.503 kb on - strand, within LRK53_RS04885at 1136.503 kb on - strand, within LRK53_RS04885at 1136.503 kb on - strand, within LRK53_RS04885at 1136.503 kb on - strand, within LRK53_RS04885at 1136.527 kb on + strand, within LRK53_RS04885at 1136.553 kb on + strand, within LRK53_RS04885at 1136.554 kb on - strand, within LRK53_RS04885at 1136.683 kb on + strandat 1136.683 kb on + strandat 1136.683 kb on + strandat 1136.683 kb on + strandat 1136.683 kb on + strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.684 kb on - strandat 1136.941 kb on + strand, within LRK53_RS04890at 1137.085 kb on + strand, within LRK53_RS04890at 1137.085 kb on + strand, within LRK53_RS04890at 1137.086 kb on - strand, within LRK53_RS04890at 1137.086 kb on - strand, within LRK53_RS04890at 1137.086 kb on - strand, within LRK53_RS04890at 1137.595 kb on + strand, within LRK53_RS04895at 1137.595 kb on + strand, within LRK53_RS04895at 1137.595 kb on + strand, within LRK53_RS04895at 1137.595 kb on + strand, within LRK53_RS04895at 1137.595 kb on + strand, within LRK53_RS04895at 1137.596 kb on - strand, within LRK53_RS04895at 1137.977 kb on + strand, within LRK53_RS04895at 1137.978 kb on - strand, within LRK53_RS04895at 1137.978 kb on - strand, within LRK53_RS04895at 1138.057 kb on + strand, within LRK53_RS04895at 1138.057 kb on + strand, within LRK53_RS04895at 1138.057 kb on + strand, within LRK53_RS04895at 1138.057 kb on + strand, within LRK53_RS04895at 1138.057 kb on + strand, within LRK53_RS04895at 1138.057 kb on + strand, within LRK53_RS04895at 1138.058 kb on - strand, within LRK53_RS04895at 1138.058 kb on - strand, within LRK53_RS04895at 1138.058 kb on - strand, within LRK53_RS04895at 1138.058 kb on - strand, within LRK53_RS04895at 1138.058 kb on - strand, within LRK53_RS04895at 1138.058 kb on - strand, within LRK53_RS04895

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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1,135,701 + LRK53_RS04885 0.13 -0.7
1,135,701 + LRK53_RS04885 0.13 -0.0
1,135,701 + LRK53_RS04885 0.13 -0.5
1,135,702 - LRK53_RS04885 0.13 -0.5
1,135,702 - LRK53_RS04885 0.13 +2.8
1,135,702 - LRK53_RS04885 0.13 +1.1
1,135,702 - LRK53_RS04885 0.13 +2.1
1,135,702 - LRK53_RS04885 0.13 -0.5
1,135,709 + LRK53_RS04885 0.13 -0.2
1,135,709 + LRK53_RS04885 0.13 -0.5
1,135,709 + LRK53_RS04885 0.13 +0.1
1,135,709 + LRK53_RS04885 0.13 -0.5
1,135,709 + LRK53_RS04885 0.13 +0.1
1,135,709 + LRK53_RS04885 0.13 -0.8
1,135,709 + LRK53_RS04885 0.13 -1.5
1,135,709 + LRK53_RS04885 0.13 -2.3
1,135,709 + LRK53_RS04885 0.13 -2.1
1,135,709 + LRK53_RS04885 0.13 -0.3
1,135,709 + LRK53_RS04885 0.13 -1.1
1,135,709 + LRK53_RS04885 0.13 -2.7
1,135,709 + LRK53_RS04885 0.13 -0.2
1,135,709 + LRK53_RS04885 0.13 +2.1
1,135,709 + LRK53_RS04885 0.13 +0.2
1,135,709 + LRK53_RS04885 0.13 +0.7
1,135,710 - LRK53_RS04885 0.13 +0.8
1,135,710 - LRK53_RS04885 0.13 -1.1
1,135,710 - LRK53_RS04885 0.13 +0.7
1,135,710 - LRK53_RS04885 0.13 +1.1
1,135,710 - LRK53_RS04885 0.13 +2.1
1,135,710 - LRK53_RS04885 0.13 +0.2
1,135,710 - LRK53_RS04885 0.13 -1.3
1,135,710 - LRK53_RS04885 0.13 +1.1
1,135,710 - LRK53_RS04885 0.13 -0.9
1,135,710 - LRK53_RS04885 0.13 -1.5
1,135,710 - LRK53_RS04885 0.13 -1.5
1,135,710 - LRK53_RS04885 0.13 +0.1
1,135,728 + LRK53_RS04885 0.15 +0.4
1,135,728 + LRK53_RS04885 0.15 -1.0
1,135,728 + LRK53_RS04885 0.15 +1.6
1,135,728 + LRK53_RS04885 0.15 +3.6
1,135,728 + LRK53_RS04885 0.15 -2.1
1,135,728 + LRK53_RS04885 0.15 -0.5
1,135,729 - LRK53_RS04885 0.15 +0.7
1,135,729 - LRK53_RS04885 0.15 -1.8
1,135,729 - LRK53_RS04885 0.15 -2.3
1,135,729 - LRK53_RS04885 0.15 +0.7
1,135,729 - LRK53_RS04885 0.15 +0.1
1,135,755 + LRK53_RS04885 0.17 -1.5
1,135,755 + LRK53_RS04885 0.17 -0.5
1,135,755 + LRK53_RS04885 0.17 +1.9
1,135,755 + LRK53_RS04885 0.17 -0.5
1,135,755 + LRK53_RS04885 0.17 +0.3
1,135,755 + LRK53_RS04885 0.17 -0.9
1,135,755 + LRK53_RS04885 0.17 -0.5
1,135,755 + LRK53_RS04885 0.17 +0.8
1,135,755 + LRK53_RS04885 0.17 -0.8
1,135,755 + LRK53_RS04885 0.17 -0.1
1,135,756 - LRK53_RS04885 0.17 -1.2
1,135,756 - LRK53_RS04885 0.17 +0.7
1,135,872 + LRK53_RS04885 0.28 +0.1
1,135,872 + LRK53_RS04885 0.28 +0.1
1,135,872 + LRK53_RS04885 0.28 -0.4
1,135,872 + LRK53_RS04885 0.28 +1.5
1,135,872 + LRK53_RS04885 0.28 -2.8
1,135,873 - LRK53_RS04885 0.28 -1.3
1,135,873 - LRK53_RS04885 0.28 -0.5
1,135,873 - LRK53_RS04885 0.28 +1.1
1,135,873 - LRK53_RS04885 0.28 +0.1
1,135,983 + LRK53_RS04885 0.37 -0.4
1,135,984 - LRK53_RS04885 0.37 -0.5
1,135,984 - LRK53_RS04885 0.37 +0.1
1,135,984 - LRK53_RS04885 0.37 -1.1
1,135,990 + LRK53_RS04885 0.38 -1.3
1,135,990 + LRK53_RS04885 0.38 -1.2
1,135,991 - LRK53_RS04885 0.38 +0.4
1,135,991 - LRK53_RS04885 0.38 +1.5
1,135,991 - LRK53_RS04885 0.38 +0.0
1,135,992 + LRK53_RS04885 0.38 -0.5
1,135,992 + LRK53_RS04885 0.38 -0.4
1,135,992 + LRK53_RS04885 0.38 -0.3
1,135,993 - LRK53_RS04885 0.38 -0.4
1,135,993 - LRK53_RS04885 0.38 +0.8
1,135,993 - LRK53_RS04885 0.38 +0.5
1,135,993 - LRK53_RS04885 0.38 +0.3
1,136,029 + LRK53_RS04885 0.41 +0.3
1,136,029 + LRK53_RS04885 0.41 -0.4
1,136,030 - LRK53_RS04885 0.41 -0.5
1,136,097 + LRK53_RS04885 0.47 -0.9
1,136,097 + LRK53_RS04885 0.47 -1.3
1,136,097 + LRK53_RS04885 0.47 -0.5
1,136,098 - LRK53_RS04885 0.47 +0.3
1,136,098 - LRK53_RS04885 0.47 -2.2
1,136,120 + LRK53_RS04885 0.49 +0.9
1,136,120 + LRK53_RS04885 0.49 -1.7
1,136,120 + LRK53_RS04885 0.49 +0.5
1,136,120 + LRK53_RS04885 0.49 -1.3
1,136,121 - LRK53_RS04885 0.49 +0.1
1,136,121 - LRK53_RS04885 0.49 +3.4
1,136,121 - LRK53_RS04885 0.49 -0.5
1,136,121 - LRK53_RS04885 0.49 +1.1
1,136,121 - LRK53_RS04885 0.49 -0.5
1,136,121 - LRK53_RS04885 0.49 +0.1
1,136,355 + LRK53_RS04885 0.70 -0.5
1,136,355 + LRK53_RS04885 0.70 +1.8
1,136,355 + LRK53_RS04885 0.70 -0.7
1,136,355 + LRK53_RS04885 0.70 +0.1
1,136,355 + LRK53_RS04885 0.70 -0.7
1,136,355 + LRK53_RS04885 0.70 +1.6
1,136,355 + LRK53_RS04885 0.70 -0.5
1,136,355 + LRK53_RS04885 0.70 +0.1
1,136,356 - LRK53_RS04885 0.70 +0.4
1,136,365 + LRK53_RS04885 0.70 +0.5
1,136,366 - LRK53_RS04885 0.70 -1.3
1,136,388 - LRK53_RS04885 0.72 -1.8
1,136,487 + LRK53_RS04885 0.81 -0.5
1,136,487 + LRK53_RS04885 0.81 -0.5
1,136,488 - LRK53_RS04885 0.81 -0.5
1,136,488 - LRK53_RS04885 0.81 -0.6
1,136,502 + LRK53_RS04885 0.82 +2.1
1,136,502 + LRK53_RS04885 0.82 -1.9
1,136,503 - LRK53_RS04885 0.82 +0.6
1,136,503 - LRK53_RS04885 0.82 -1.3
1,136,503 - LRK53_RS04885 0.82 +1.6
1,136,503 - LRK53_RS04885 0.82 +0.6
1,136,527 + LRK53_RS04885 0.85 -0.7
1,136,553 + LRK53_RS04885 0.87 -0.9
1,136,554 - LRK53_RS04885 0.87 +0.8
1,136,683 + +1.4
1,136,683 + +0.6
1,136,683 + -0.5
1,136,683 + +1.1
1,136,683 + +1.8
1,136,684 - -0.8
1,136,684 - -0.2
1,136,684 - -2.3
1,136,684 - -0.6
1,136,684 - +0.4
1,136,684 - +0.1
1,136,684 - +0.7
1,136,684 - +0.3
1,136,684 - +0.1
1,136,684 - +3.1
1,136,941 + LRK53_RS04890 0.37 -1.7
1,137,085 + LRK53_RS04890 0.60 +0.1
1,137,085 + LRK53_RS04890 0.60 -1.5
1,137,086 - LRK53_RS04890 0.60 +2.1
1,137,086 - LRK53_RS04890 0.60 -1.9
1,137,086 - LRK53_RS04890 0.60 -0.7
1,137,595 + LRK53_RS04895 0.27 -0.4
1,137,595 + LRK53_RS04895 0.27 -0.7
1,137,595 + LRK53_RS04895 0.27 -0.5
1,137,595 + LRK53_RS04895 0.27 +0.8
1,137,595 + LRK53_RS04895 0.27 -1.5
1,137,596 - LRK53_RS04895 0.27 +1.9
1,137,977 + LRK53_RS04895 0.68 +0.6
1,137,978 - LRK53_RS04895 0.68 +0.6
1,137,978 - LRK53_RS04895 0.68 -0.5
1,138,057 + LRK53_RS04895 0.76 -2.1
1,138,057 + LRK53_RS04895 0.76 +1.1
1,138,057 + LRK53_RS04895 0.76 -0.9
1,138,057 + LRK53_RS04895 0.76 -1.1
1,138,057 + LRK53_RS04895 0.76 +0.1
1,138,057 + LRK53_RS04895 0.76 +0.1
1,138,058 - LRK53_RS04895 0.76 +2.1
1,138,058 - LRK53_RS04895 0.76 +0.8
1,138,058 - LRK53_RS04895 0.76 +0.8
1,138,058 - LRK53_RS04895 0.76 -1.0
1,138,058 - LRK53_RS04895 0.76 +1.1
1,138,058 - LRK53_RS04895 0.76 -1.5

Or see this region's nucleotide sequence