Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04255 and LRK53_RS04260 overlap by 4 nucleotides LRK53_RS04260 and LRK53_RS04265 are separated by 166 nucleotides LRK53_RS04265 and LRK53_RS04270 are separated by 127 nucleotides LRK53_RS04270 and LRK53_RS04275 overlap by 4 nucleotides
LRK53_RS04255: LRK53_RS04255 - hypothetical protein, at 992,561 to 992,968
_RS04255
LRK53_RS04260: LRK53_RS04260 - DUF962 domain-containing protein, at 992,965 to 993,456
_RS04260
LRK53_RS04265: LRK53_RS04265 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 993,623 to 994,519
_RS04265
LRK53_RS04270: LRK53_RS04270 - c-type cytochrome, at 994,647 to 994,955
_RS04270
LRK53_RS04275: LRK53_RS04275 - co-chaperone DjlA, at 994,952 to 995,758
_RS04275
Position (kb) 993
994
995 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 992.770 kb on - strand, within LRK53_RS04255 at 992.770 kb on - strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.829 kb on + strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.830 kb on - strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.919 kb on + strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 992.920 kb on - strand, within LRK53_RS04255 at 993.035 kb on + strand, within LRK53_RS04260 at 993.035 kb on + strand, within LRK53_RS04260 at 993.035 kb on + strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.036 kb on - strand, within LRK53_RS04260 at 993.115 kb on + strand, within LRK53_RS04260 at 993.116 kb on - strand, within LRK53_RS04260 at 993.116 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.162 kb on - strand, within LRK53_RS04260 at 993.240 kb on - strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.245 kb on + strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.246 kb on - strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.404 kb on + strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.405 kb on - strand, within LRK53_RS04260 at 993.488 kb on + strand at 993.488 kb on + strand at 993.488 kb on + strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.489 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.532 kb on - strand at 993.624 kb on + strand at 993.666 kb on + strand at 993.666 kb on + strand at 993.667 kb on - strand at 993.772 kb on - strand, within LRK53_RS04265 at 993.772 kb on - strand, within LRK53_RS04265 at 993.772 kb on - strand, within LRK53_RS04265 at 993.772 kb on - strand, within LRK53_RS04265 at 993.788 kb on - strand, within LRK53_RS04265 at 993.798 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.855 kb on + strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.856 kb on - strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.945 kb on + strand, within LRK53_RS04265 at 993.946 kb on - strand, within LRK53_RS04265 at 993.946 kb on - strand, within LRK53_RS04265 at 993.946 kb on - strand, within LRK53_RS04265 at 994.143 kb on + strand, within LRK53_RS04265 at 994.144 kb on - strand, within LRK53_RS04265 at 994.171 kb on - strand, within LRK53_RS04265 at 994.171 kb on - strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.236 kb on + strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.237 kb on - strand, within LRK53_RS04265 at 994.446 kb on + strand at 994.447 kb on - strand at 994.447 kb on - strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.448 kb on + strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.449 kb on - strand at 994.556 kb on + strand at 994.556 kb on + strand at 994.657 kb on + strand at 994.657 kb on + strand at 994.658 kb on - strand at 994.658 kb on - strand at 994.812 kb on + strand, within LRK53_RS04270 at 994.812 kb on + strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.813 kb on - strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.923 kb on + strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.924 kb on - strand, within LRK53_RS04270 at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.958 kb on + strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.959 kb on - strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.964 kb on + strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 994.965 kb on - strand at 995.425 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275 at 995.510 kb on + strand, within LRK53_RS04275
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 992,770 - LRK53_RS04255 0.51 +0.3 992,770 - LRK53_RS04255 0.51 +0.5 992,829 + LRK53_RS04255 0.66 -1.8 992,829 + LRK53_RS04255 0.66 +1.4 992,829 + LRK53_RS04255 0.66 -0.2 992,829 + LRK53_RS04255 0.66 -0.6 992,829 + LRK53_RS04255 0.66 +0.1 992,829 + LRK53_RS04255 0.66 +1.1 992,829 + LRK53_RS04255 0.66 -1.7 992,829 + LRK53_RS04255 0.66 -0.2 992,829 + LRK53_RS04255 0.66 -0.6 992,829 + LRK53_RS04255 0.66 -1.0 992,829 + LRK53_RS04255 0.66 -1.7 992,829 + LRK53_RS04255 0.66 -0.7 992,829 + LRK53_RS04255 0.66 -1.9 992,830 - LRK53_RS04255 0.66 +2.7 992,830 - LRK53_RS04255 0.66 +0.1 992,830 - LRK53_RS04255 0.66 -0.0 992,830 - LRK53_RS04255 0.66 -0.3 992,919 + LRK53_RS04255 0.88 +1.1 992,919 + LRK53_RS04255 0.88 +0.1 992,919 + LRK53_RS04255 0.88 +0.8 992,919 + LRK53_RS04255 0.88 +1.1 992,919 + LRK53_RS04255 0.88 -1.5 992,919 + LRK53_RS04255 0.88 -0.3 992,919 + LRK53_RS04255 0.88 +0.6 992,919 + LRK53_RS04255 0.88 +1.1 992,919 + LRK53_RS04255 0.88 -1.5 992,919 + LRK53_RS04255 0.88 +0.6 992,919 + LRK53_RS04255 0.88 +1.1 992,919 + LRK53_RS04255 0.88 -0.6 992,920 - LRK53_RS04255 0.88 -0.6 992,920 - LRK53_RS04255 0.88 -1.0 992,920 - LRK53_RS04255 0.88 +1.1 992,920 - LRK53_RS04255 0.88 -1.2 992,920 - LRK53_RS04255 0.88 -0.9 992,920 - LRK53_RS04255 0.88 +0.1 992,920 - LRK53_RS04255 0.88 +0.4 993,035 + LRK53_RS04260 0.14 +3.1 993,035 + LRK53_RS04260 0.14 +1.3 993,035 + LRK53_RS04260 0.14 +1.4 993,036 - LRK53_RS04260 0.14 -0.9 993,036 - LRK53_RS04260 0.14 +0.1 993,036 - LRK53_RS04260 0.14 -0.9 993,036 - LRK53_RS04260 0.14 -0.6 993,115 + LRK53_RS04260 0.30 +0.5 993,116 - LRK53_RS04260 0.31 +1.1 993,116 - LRK53_RS04260 0.31 -2.4 993,162 - LRK53_RS04260 0.40 -0.3 993,162 - LRK53_RS04260 0.40 -2.5 993,162 - LRK53_RS04260 0.40 -0.5 993,162 - LRK53_RS04260 0.40 -0.7 993,240 - LRK53_RS04260 0.56 +0.4 993,245 + LRK53_RS04260 0.57 -1.9 993,245 + LRK53_RS04260 0.57 -0.1 993,245 + LRK53_RS04260 0.57 -2.8 993,246 - LRK53_RS04260 0.57 -0.9 993,246 - LRK53_RS04260 0.57 +0.8 993,404 + LRK53_RS04260 0.89 -0.5 993,404 + LRK53_RS04260 0.89 -1.5 993,404 + LRK53_RS04260 0.89 +0.8 993,404 + LRK53_RS04260 0.89 -0.4 993,404 + LRK53_RS04260 0.89 -0.2 993,404 + LRK53_RS04260 0.89 -0.3 993,404 + LRK53_RS04260 0.89 -1.0 993,405 - LRK53_RS04260 0.89 -0.6 993,405 - LRK53_RS04260 0.89 -0.7 993,405 - LRK53_RS04260 0.89 -0.5 993,405 - LRK53_RS04260 0.89 -0.7 993,405 - LRK53_RS04260 0.89 -1.4 993,405 - LRK53_RS04260 0.89 -0.9 993,488 + -0.6 993,488 + -0.3 993,488 + -1.5 993,489 - -0.5 993,489 - -1.4 993,489 - -2.7 993,489 - +0.4 993,489 - +3.7 993,489 - -0.2 993,532 - -1.2 993,532 - -0.5 993,532 - -1.5 993,532 - -1.2 993,532 - +0.5 993,624 + -1.2 993,666 + -0.6 993,666 + -0.5 993,667 - +0.5 993,772 - LRK53_RS04265 0.17 -1.4 993,772 - LRK53_RS04265 0.17 +1.1 993,772 - LRK53_RS04265 0.17 -2.4 993,772 - LRK53_RS04265 0.17 +1.1 993,788 - LRK53_RS04265 0.18 -0.9 993,798 + LRK53_RS04265 0.20 -0.5 993,855 + LRK53_RS04265 0.26 -1.5 993,855 + LRK53_RS04265 0.26 +0.2 993,855 + LRK53_RS04265 0.26 +0.1 993,855 + LRK53_RS04265 0.26 -1.7 993,856 - LRK53_RS04265 0.26 +1.1 993,856 - LRK53_RS04265 0.26 -1.9 993,856 - LRK53_RS04265 0.26 -0.9 993,856 - LRK53_RS04265 0.26 -1.2 993,856 - LRK53_RS04265 0.26 -2.7 993,856 - LRK53_RS04265 0.26 +1.7 993,945 + LRK53_RS04265 0.36 +0.4 993,945 + LRK53_RS04265 0.36 -1.7 993,945 + LRK53_RS04265 0.36 -0.7 993,945 + LRK53_RS04265 0.36 -1.6 993,946 - LRK53_RS04265 0.36 -0.1 993,946 - LRK53_RS04265 0.36 -1.2 993,946 - LRK53_RS04265 0.36 -0.5 994,143 + LRK53_RS04265 0.58 -1.5 994,144 - LRK53_RS04265 0.58 -0.9 994,171 - LRK53_RS04265 0.61 -1.5 994,171 - LRK53_RS04265 0.61 +0.2 994,236 + LRK53_RS04265 0.68 -1.5 994,236 + LRK53_RS04265 0.68 -0.1 994,236 + LRK53_RS04265 0.68 +0.9 994,236 + LRK53_RS04265 0.68 -2.1 994,236 + LRK53_RS04265 0.68 -0.6 994,236 + LRK53_RS04265 0.68 -0.2 994,236 + LRK53_RS04265 0.68 -1.6 994,236 + LRK53_RS04265 0.68 -0.7 994,236 + LRK53_RS04265 0.68 -0.3 994,237 - LRK53_RS04265 0.68 -1.7 994,237 - LRK53_RS04265 0.68 +1.1 994,237 - LRK53_RS04265 0.68 -0.2 994,237 - LRK53_RS04265 0.68 +0.4 994,446 + +0.8 994,447 - -1.6 994,447 - +1.1 994,448 + -1.4 994,448 + +0.1 994,448 + +0.7 994,448 + +1.1 994,448 + -1.5 994,448 + -2.1 994,448 + +0.1 994,449 - +1.1 994,449 - +1.1 994,449 - +1.1 994,449 - -2.2 994,449 - -2.5 994,449 - +0.0 994,449 - -0.5 994,449 - -1.3 994,449 - -0.9 994,449 - -0.1 994,556 + +0.1 994,556 + -2.7 994,657 + +0.1 994,657 + +1.1 994,658 - +0.2 994,658 - -0.1 994,812 + LRK53_RS04270 0.53 -0.5 994,812 + LRK53_RS04270 0.53 -1.5 994,813 - LRK53_RS04270 0.54 -1.1 994,813 - LRK53_RS04270 0.54 -0.1 994,813 - LRK53_RS04270 0.54 +0.7 994,923 + LRK53_RS04270 0.89 -3.2 994,923 + LRK53_RS04270 0.89 -0.5 994,923 + LRK53_RS04270 0.89 -0.9 994,924 - LRK53_RS04270 0.90 -0.4 994,924 - LRK53_RS04270 0.90 -0.2 994,924 - LRK53_RS04270 0.90 -2.4 994,958 + -0.9 994,958 + +0.0 994,958 + -0.6 994,958 + -1.7 994,958 + -0.4 994,958 + -0.2 994,958 + -0.3 994,958 + -0.5 994,958 + +0.1 994,958 + -2.6 994,959 - -0.7 994,959 - -0.5 994,959 - -0.9 994,959 - -0.8 994,959 - +1.1 994,959 - +0.6 994,959 - -0.4 994,959 - -0.9 994,959 - -0.9 994,959 - +0.4 994,959 - -1.3 994,959 - -2.1 994,964 + -1.7 994,964 + +0.4 994,964 + -1.4 994,964 + -1.1 994,964 + -2.2 994,964 + +0.9 994,964 + +0.6 994,964 + +0.1 994,964 + +1.5 994,964 + -0.4 994,964 + +0.1 994,965 - +1.8 994,965 - +1.4 994,965 - -1.5 994,965 - -2.1 994,965 - -1.3 994,965 - -0.3 994,965 - +0.1 994,965 - +0.9 994,965 - +0.6 994,965 - -1.5 994,965 - +0.0 994,965 - +0.5 994,965 - -0.0 994,965 - +0.6 994,965 - -0.1 995,425 + LRK53_RS04275 0.59 -1.5 995,510 + LRK53_RS04275 0.69 +2.1 995,510 + LRK53_RS04275 0.69 +1.1 995,510 + LRK53_RS04275 0.69 -2.1
Or see this region's nucleotide sequence