Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04070

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04065 and LRK53_RS04070 are separated by 109 nucleotidesLRK53_RS04070 and LRK53_RS04075 are separated by 193 nucleotides LRK53_RS04065: LRK53_RS04065 - flavohemoglobin expression-modulating QEGLA motif protein, at 952,051 to 953,340 _RS04065 LRK53_RS04070: LRK53_RS04070 - NADP-dependent malic enzyme, at 953,450 to 955,741 _RS04070 LRK53_RS04075: LRK53_RS04075 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 955,935 to 958,649 _RS04075 Position (kb) 953 954 955 956Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 952.483 kb on + strand, within LRK53_RS04065at 952.483 kb on + strand, within LRK53_RS04065at 952.483 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.559 kb on + strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.560 kb on - strand, within LRK53_RS04065at 952.574 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.702 kb on + strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.703 kb on - strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.948 kb on + strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.949 kb on - strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.954 kb on + strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 952.955 kb on - strand, within LRK53_RS04065at 953.062 kb on + strand, within LRK53_RS04065at 953.063 kb on - strand, within LRK53_RS04065at 953.063 kb on - strand, within LRK53_RS04065at 953.063 kb on - strand, within LRK53_RS04065at 953.063 kb on - strand, within LRK53_RS04065at 953.063 kb on - strand, within LRK53_RS04065at 953.079 kb on + strand, within LRK53_RS04065at 953.366 kb on + strandat 953.367 kb on - strandat 953.367 kb on - strandat 953.414 kb on + strandat 953.414 kb on + strandat 955.146 kb on - strand, within LRK53_RS04070at 955.397 kb on - strand, within LRK53_RS04070at 955.568 kb on + strandat 955.844 kb on + strandat 956.118 kb on + strandat 956.118 kb on + strandat 956.118 kb on + strandat 956.118 kb on + strandat 956.118 kb on + strandat 956.119 kb on - strandat 956.119 kb on - strandat 956.119 kb on - strandat 956.119 kb on - strandat 956.119 kb on - strandat 956.119 kb on - strandat 956.119 kb on - strandat 956.292 kb on + strand, within LRK53_RS04075at 956.292 kb on + strand, within LRK53_RS04075at 956.292 kb on + strand, within LRK53_RS04075at 956.292 kb on + strand, within LRK53_RS04075at 956.292 kb on + strand, within LRK53_RS04075at 956.292 kb on + strand, within LRK53_RS04075at 956.293 kb on - strand, within LRK53_RS04075at 956.293 kb on - strand, within LRK53_RS04075at 956.385 kb on + strand, within LRK53_RS04075at 956.385 kb on + strand, within LRK53_RS04075at 956.385 kb on + strand, within LRK53_RS04075at 956.385 kb on + strand, within LRK53_RS04075at 956.386 kb on - strand, within LRK53_RS04075at 956.386 kb on - strand, within LRK53_RS04075at 956.386 kb on - strand, within LRK53_RS04075at 956.505 kb on + strand, within LRK53_RS04075at 956.505 kb on + strand, within LRK53_RS04075at 956.556 kb on + strand, within LRK53_RS04075at 956.557 kb on - strand, within LRK53_RS04075at 956.557 kb on - strand, within LRK53_RS04075at 956.557 kb on - strand, within LRK53_RS04075at 956.557 kb on - strand, within LRK53_RS04075at 956.557 kb on - strand, within LRK53_RS04075at 956.557 kb on - strand, within LRK53_RS04075at 956.577 kb on + strand, within LRK53_RS04075at 956.577 kb on + strand, within LRK53_RS04075at 956.577 kb on + strand, within LRK53_RS04075at 956.577 kb on + strand, within LRK53_RS04075at 956.577 kb on + strand, within LRK53_RS04075at 956.578 kb on - strand, within LRK53_RS04075at 956.578 kb on - strand, within LRK53_RS04075at 956.578 kb on - strand, within LRK53_RS04075at 956.578 kb on - strand, within LRK53_RS04075at 956.578 kb on - strand, within LRK53_RS04075

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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952,483 + LRK53_RS04065 0.33 -1.5
952,483 + LRK53_RS04065 0.33 -0.5
952,483 + LRK53_RS04065 0.33 +0.3
952,559 + LRK53_RS04065 0.39 -2.6
952,559 + LRK53_RS04065 0.39 -0.2
952,559 + LRK53_RS04065 0.39 +0.1
952,559 + LRK53_RS04065 0.39 -1.6
952,559 + LRK53_RS04065 0.39 -0.2
952,559 + LRK53_RS04065 0.39 +0.3
952,559 + LRK53_RS04065 0.39 +0.6
952,560 - LRK53_RS04065 0.39 -0.3
952,560 - LRK53_RS04065 0.39 +0.4
952,560 - LRK53_RS04065 0.39 +0.5
952,560 - LRK53_RS04065 0.39 +2.7
952,560 - LRK53_RS04065 0.39 -2.3
952,560 - LRK53_RS04065 0.39 +0.3
952,574 + LRK53_RS04065 0.41 -0.9
952,702 + LRK53_RS04065 0.50 -1.2
952,702 + LRK53_RS04065 0.50 -1.2
952,702 + LRK53_RS04065 0.50 -1.9
952,702 + LRK53_RS04065 0.50 -0.9
952,702 + LRK53_RS04065 0.50 -0.5
952,703 - LRK53_RS04065 0.51 +2.1
952,703 - LRK53_RS04065 0.51 +1.5
952,703 - LRK53_RS04065 0.51 +1.8
952,703 - LRK53_RS04065 0.51 -2.6
952,948 + LRK53_RS04065 0.70 +0.3
952,948 + LRK53_RS04065 0.70 +0.1
952,948 + LRK53_RS04065 0.70 +2.0
952,948 + LRK53_RS04065 0.70 -0.2
952,948 + LRK53_RS04065 0.70 -0.9
952,948 + LRK53_RS04065 0.70 +0.6
952,949 - LRK53_RS04065 0.70 -0.2
952,949 - LRK53_RS04065 0.70 +0.1
952,949 - LRK53_RS04065 0.70 +1.1
952,949 - LRK53_RS04065 0.70 -0.5
952,949 - LRK53_RS04065 0.70 +0.3
952,949 - LRK53_RS04065 0.70 -2.2
952,949 - LRK53_RS04065 0.70 +1.9
952,949 - LRK53_RS04065 0.70 -0.1
952,949 - LRK53_RS04065 0.70 -0.1
952,949 - LRK53_RS04065 0.70 -0.2
952,949 - LRK53_RS04065 0.70 -0.6
952,954 + LRK53_RS04065 0.70 -1.7
952,954 + LRK53_RS04065 0.70 -0.5
952,954 + LRK53_RS04065 0.70 +1.5
952,954 + LRK53_RS04065 0.70 +0.5
952,954 + LRK53_RS04065 0.70 -0.5
952,954 + LRK53_RS04065 0.70 -0.7
952,954 + LRK53_RS04065 0.70 -0.3
952,954 + LRK53_RS04065 0.70 -1.1
952,954 + LRK53_RS04065 0.70 +1.1
952,955 - LRK53_RS04065 0.70 +0.0
952,955 - LRK53_RS04065 0.70 -0.8
952,955 - LRK53_RS04065 0.70 +0.1
952,955 - LRK53_RS04065 0.70 -1.9
952,955 - LRK53_RS04065 0.70 +0.8
953,062 + LRK53_RS04065 0.78 +0.1
953,063 - LRK53_RS04065 0.78 +1.1
953,063 - LRK53_RS04065 0.78 +1.5
953,063 - LRK53_RS04065 0.78 +1.1
953,063 - LRK53_RS04065 0.78 -2.3
953,063 - LRK53_RS04065 0.78 -0.1
953,079 + LRK53_RS04065 0.80 +0.9
953,366 + -1.0
953,367 - +0.1
953,367 - -1.7
953,414 + +2.1
953,414 + +0.1
955,146 - LRK53_RS04070 0.74 -0.7
955,397 - LRK53_RS04070 0.85 -1.2
955,568 + +0.2
955,844 + -1.1
956,118 + -2.6
956,118 + -0.9
956,118 + -0.5
956,118 + -1.2
956,118 + +0.1
956,119 - -2.7
956,119 - +0.1
956,119 - +0.1
956,119 - -2.0
956,119 - -1.2
956,119 - -0.9
956,119 - +1.1
956,292 + LRK53_RS04075 0.13 +3.7
956,292 + LRK53_RS04075 0.13 -1.8
956,292 + LRK53_RS04075 0.13 +0.1
956,292 + LRK53_RS04075 0.13 -0.9
956,292 + LRK53_RS04075 0.13 -1.9
956,292 + LRK53_RS04075 0.13 -0.5
956,293 - LRK53_RS04075 0.13 -2.1
956,293 - LRK53_RS04075 0.13 -1.3
956,385 + LRK53_RS04075 0.17 -1.2
956,385 + LRK53_RS04075 0.17 -0.2
956,385 + LRK53_RS04075 0.17 +0.5
956,385 + LRK53_RS04075 0.17 -0.9
956,386 - LRK53_RS04075 0.17 -0.9
956,386 - LRK53_RS04075 0.17 +0.1
956,386 - LRK53_RS04075 0.17 +0.1
956,505 + LRK53_RS04075 0.21 -0.9
956,505 + LRK53_RS04075 0.21 -2.7
956,556 + LRK53_RS04075 0.23 -1.0
956,557 - LRK53_RS04075 0.23 -1.0
956,557 - LRK53_RS04075 0.23 -0.9
956,557 - LRK53_RS04075 0.23 +0.1
956,557 - LRK53_RS04075 0.23 -3.0
956,557 - LRK53_RS04075 0.23 -0.7
956,557 - LRK53_RS04075 0.23 -3.5
956,577 + LRK53_RS04075 0.24 +0.1
956,577 + LRK53_RS04075 0.24 +1.1
956,577 + LRK53_RS04075 0.24 -1.2
956,577 + LRK53_RS04075 0.24 -1.5
956,577 + LRK53_RS04075 0.24 -1.2
956,578 - LRK53_RS04075 0.24 -0.9
956,578 - LRK53_RS04075 0.24 -2.0
956,578 - LRK53_RS04075 0.24 -0.6
956,578 - LRK53_RS04075 0.24 -0.9
956,578 - LRK53_RS04075 0.24 +1.9

Or see this region's nucleotide sequence