Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03630 and LRK53_RS03635 are separated by 295 nucleotides LRK53_RS03635 and LRK53_RS03640 are separated by 11 nucleotides LRK53_RS03640 and LRK53_RS03645 are separated by 295 nucleotides
LRK53_RS03630: LRK53_RS03630 - fatty acid desaturase, at 855,550 to 856,743
_RS03630
LRK53_RS03635: LRK53_RS03635 - 50S ribosomal protein L33, at 857,039 to 857,206
_RS03635
LRK53_RS03640: LRK53_RS03640 - 50S ribosomal protein L28, at 857,218 to 857,454
_RS03640
LRK53_RS03645: LRK53_RS03645 - protein-export chaperone SecB, at 857,750 to 858,253
_RS03645
Position (kb) 857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 856.402 kb on + strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.402 kb on + strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.403 kb on - strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.405 kb on + strand, within LRK53_RS03630 at 856.406 kb on - strand, within LRK53_RS03630 at 856.406 kb on - strand, within LRK53_RS03630 at 856.406 kb on - strand, within LRK53_RS03630 at 856.724 kb on - strand at 856.724 kb on - strand at 856.724 kb on - strand at 856.724 kb on - strand at 856.724 kb on - strand at 856.724 kb on - strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.837 kb on + strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.838 kb on - strand at 856.868 kb on + strand at 856.868 kb on + strand at 856.869 kb on - strand at 856.907 kb on - strand at 856.981 kb on + strand at 856.982 kb on - strand at 856.982 kb on - strand at 856.982 kb on - strand at 856.982 kb on - strand at 856.982 kb on - strand at 856.982 kb on - strand at 857.092 kb on - strand, within LRK53_RS03635 at 857.146 kb on - strand, within LRK53_RS03635 at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.697 kb on + strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.698 kb on - strand at 857.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 856,402 + LRK53_RS03630 0.71 -1.0 856,402 + LRK53_RS03630 0.71 +0.3 856,402 + LRK53_RS03630 0.71 -2.7 856,402 + LRK53_RS03630 0.71 -0.1 856,402 + LRK53_RS03630 0.71 -2.7 856,403 - LRK53_RS03630 0.71 -1.6 856,403 - LRK53_RS03630 0.71 -1.6 856,403 - LRK53_RS03630 0.71 +0.2 856,403 - LRK53_RS03630 0.71 -0.7 856,403 - LRK53_RS03630 0.71 -0.1 856,403 - LRK53_RS03630 0.71 -0.5 856,403 - LRK53_RS03630 0.71 -1.0 856,403 - LRK53_RS03630 0.71 -0.9 856,403 - LRK53_RS03630 0.71 +0.5 856,403 - LRK53_RS03630 0.71 -0.4 856,405 + LRK53_RS03630 0.72 -1.0 856,405 + LRK53_RS03630 0.72 -0.9 856,405 + LRK53_RS03630 0.72 -2.0 856,405 + LRK53_RS03630 0.72 -1.0 856,405 + LRK53_RS03630 0.72 +0.2 856,405 + LRK53_RS03630 0.72 -1.9 856,405 + LRK53_RS03630 0.72 -0.5 856,406 - LRK53_RS03630 0.72 -1.1 856,406 - LRK53_RS03630 0.72 -0.4 856,406 - LRK53_RS03630 0.72 -1.5 856,724 - -0.5 856,724 - -0.6 856,724 - +0.4 856,724 - +1.2 856,724 - -1.9 856,724 - -1.7 856,837 + -1.6 856,837 + +1.2 856,837 + +0.2 856,837 + -2.6 856,837 + -2.0 856,837 + +0.6 856,837 + -1.4 856,837 + -1.1 856,837 + +0.8 856,837 + +1.1 856,837 + -1.7 856,837 + +0.3 856,838 - -1.0 856,838 - -1.8 856,838 - +1.0 856,868 + -0.1 856,868 + -0.2 856,869 - -1.5 856,907 - -0.4 856,981 + -0.6 856,982 - -0.3 856,982 - +1.2 856,982 - +1.0 856,982 - -2.0 856,982 - +0.5 856,982 - +1.2 857,092 - LRK53_RS03635 0.32 +0.2 857,146 - LRK53_RS03635 0.64 -1.0 857,697 + -1.4 857,697 + +0.2 857,697 + -0.0 857,697 + +0.2 857,697 + -2.0 857,697 + -1.8 857,697 + -3.0 857,697 + -1.0 857,697 + +0.4 857,697 + -1.8 857,697 + +0.8 857,697 + +1.2 857,697 + +2.8 857,697 + +0.0 857,697 + -0.4 857,697 + +0.2 857,697 + +0.4 857,697 + -1.0 857,697 + +0.3 857,697 + -0.6 857,697 + -0.1 857,697 + +0.5 857,697 + +1.6 857,697 + -0.4 857,697 + +1.2 857,697 + +3.5 857,697 + -0.2 857,697 + -0.4 857,697 + +0.7 857,697 + -0.5 857,697 + +0.1 857,697 + +0.6 857,697 + -1.8 857,697 + +0.4 857,697 + -0.5 857,697 + -0.4 857,697 + -2.0 857,698 - -1.3 857,698 - -1.6 857,698 - -0.2 857,698 - -1.0 857,698 - +0.8 857,698 - -1.0 857,698 - -1.0 857,698 - +0.2 857,698 - -1.4 857,698 - -1.1 857,698 - -1.1 857,698 - +1.2 857,698 - -2.1 857,698 - -1.6 857,698 - +0.4 857,698 - +0.4 857,698 - +0.2 857,698 - -1.4 857,698 - +1.2 857,698 - -1.1 857,698 - -0.8 857,698 - -0.4 857,698 - -0.3 857,698 - -1.3 857,698 - +0.4 857,698 - -1.1 857,698 - -0.8 857,698 - -0.4 857,698 - -1.4 857,698 - -0.8 857,698 - +0.3 857,698 - -0.0 857,698 - -0.8 857,720 + +1.2
Or see this region's nucleotide sequence