Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03545

Experiment: NLDM_defined low phosphorus; midlog

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS03535 and LRK53_RS03540 are separated by 222 nucleotidesLRK53_RS03540 and LRK53_RS03545 are separated by 7 nucleotidesLRK53_RS03545 and LRK53_RS03550 are separated by 323 nucleotides LRK53_RS03535: LRK53_RS03535 - DMT family transporter, at 834,511 to 835,443 _RS03535 LRK53_RS03540: LRK53_RS03540 - FmdE family protein, at 835,666 to 836,280 _RS03540 LRK53_RS03545: LRK53_RS03545 - DUF2249 domain-containing protein, at 836,288 to 836,554 _RS03545 LRK53_RS03550: LRK53_RS03550 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 836,878 to 837,645 _RS03550 Position (kb) 836 837Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 835.919 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.049 kb on + strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.050 kb on - strand, within LRK53_RS03540at 836.091 kb on - strand, within LRK53_RS03540at 836.091 kb on - strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.177 kb on + strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.178 kb on - strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.183 kb on + strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.184 kb on - strand, within LRK53_RS03540at 836.261 kb on + strandat 836.261 kb on + strandat 836.261 kb on + strandat 836.262 kb on - strandat 836.262 kb on - strandat 836.273 kb on + strandat 836.274 kb on - strandat 836.274 kb on - strandat 836.274 kb on - strandat 836.274 kb on - strandat 836.353 kb on - strand, within LRK53_RS03545at 836.571 kb on + strandat 836.571 kb on + strandat 836.571 kb on + strandat 836.572 kb on - strandat 836.588 kb on + strandat 836.588 kb on + strandat 836.588 kb on + strandat 836.588 kb on + strandat 836.588 kb on + strandat 836.588 kb on + strandat 836.588 kb on + strandat 836.589 kb on - strandat 836.589 kb on - strandat 836.589 kb on - strandat 836.589 kb on - strandat 836.589 kb on - strandat 836.589 kb on - strandat 836.589 kb on - strandat 836.888 kb on + strandat 836.888 kb on + strandat 836.888 kb on + strandat 836.888 kb on + strandat 836.888 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
remove
835,919 + LRK53_RS03540 0.41 -0.6
836,049 + LRK53_RS03540 0.62 -1.0
836,049 + LRK53_RS03540 0.62 +1.2
836,049 + LRK53_RS03540 0.62 +3.5
836,049 + LRK53_RS03540 0.62 +1.2
836,049 + LRK53_RS03540 0.62 +1.8
836,049 + LRK53_RS03540 0.62 +0.0
836,049 + LRK53_RS03540 0.62 -0.7
836,049 + LRK53_RS03540 0.62 -0.2
836,049 + LRK53_RS03540 0.62 +1.7
836,049 + LRK53_RS03540 0.62 -0.7
836,049 + LRK53_RS03540 0.62 +0.2
836,049 + LRK53_RS03540 0.62 +1.2
836,049 + LRK53_RS03540 0.62 +0.1
836,049 + LRK53_RS03540 0.62 +0.5
836,049 + LRK53_RS03540 0.62 -3.5
836,050 - LRK53_RS03540 0.62 -0.6
836,050 - LRK53_RS03540 0.62 +0.4
836,050 - LRK53_RS03540 0.62 -2.0
836,050 - LRK53_RS03540 0.62 +0.2
836,050 - LRK53_RS03540 0.62 -0.7
836,050 - LRK53_RS03540 0.62 -2.1
836,050 - LRK53_RS03540 0.62 +0.3
836,050 - LRK53_RS03540 0.62 -2.3
836,050 - LRK53_RS03540 0.62 -2.6
836,050 - LRK53_RS03540 0.62 -0.9
836,050 - LRK53_RS03540 0.62 -0.9
836,050 - LRK53_RS03540 0.62 +0.6
836,050 - LRK53_RS03540 0.62 -1.6
836,050 - LRK53_RS03540 0.62 +1.0
836,050 - LRK53_RS03540 0.62 -1.8
836,091 - LRK53_RS03540 0.69 -0.5
836,091 - LRK53_RS03540 0.69 +0.8
836,177 + LRK53_RS03540 0.83 +0.7
836,177 + LRK53_RS03540 0.83 -0.5
836,177 + LRK53_RS03540 0.83 -1.6
836,177 + LRK53_RS03540 0.83 -0.7
836,177 + LRK53_RS03540 0.83 -0.5
836,177 + LRK53_RS03540 0.83 -0.5
836,177 + LRK53_RS03540 0.83 -0.2
836,177 + LRK53_RS03540 0.83 -0.4
836,177 + LRK53_RS03540 0.83 +0.2
836,177 + LRK53_RS03540 0.83 +0.8
836,177 + LRK53_RS03540 0.83 +0.2
836,177 + LRK53_RS03540 0.83 -0.5
836,178 - LRK53_RS03540 0.83 +0.3
836,178 - LRK53_RS03540 0.83 +3.5
836,178 - LRK53_RS03540 0.83 -1.1
836,178 - LRK53_RS03540 0.83 +0.5
836,178 - LRK53_RS03540 0.83 +2.0
836,178 - LRK53_RS03540 0.83 -1.0
836,178 - LRK53_RS03540 0.83 -0.8
836,178 - LRK53_RS03540 0.83 -0.8
836,178 - LRK53_RS03540 0.83 -0.3
836,178 - LRK53_RS03540 0.83 +1.7
836,178 - LRK53_RS03540 0.83 +0.5
836,178 - LRK53_RS03540 0.83 -0.1
836,178 - LRK53_RS03540 0.83 +1.2
836,178 - LRK53_RS03540 0.83 +0.2
836,183 + LRK53_RS03540 0.84 -0.4
836,183 + LRK53_RS03540 0.84 +0.4
836,183 + LRK53_RS03540 0.84 -0.3
836,183 + LRK53_RS03540 0.84 -0.4
836,183 + LRK53_RS03540 0.84 -0.5
836,183 + LRK53_RS03540 0.84 -0.3
836,183 + LRK53_RS03540 0.84 -0.2
836,183 + LRK53_RS03540 0.84 -1.4
836,183 + LRK53_RS03540 0.84 -0.8
836,183 + LRK53_RS03540 0.84 +0.2
836,183 + LRK53_RS03540 0.84 -0.7
836,183 + LRK53_RS03540 0.84 -0.2
836,183 + LRK53_RS03540 0.84 +0.2
836,184 - LRK53_RS03540 0.84 +0.2
836,184 - LRK53_RS03540 0.84 -1.1
836,184 - LRK53_RS03540 0.84 +0.4
836,184 - LRK53_RS03540 0.84 -3.0
836,184 - LRK53_RS03540 0.84 +0.5
836,184 - LRK53_RS03540 0.84 -2.3
836,184 - LRK53_RS03540 0.84 -0.3
836,184 - LRK53_RS03540 0.84 +0.2
836,184 - LRK53_RS03540 0.84 +0.1
836,184 - LRK53_RS03540 0.84 -1.5
836,184 - LRK53_RS03540 0.84 -0.4
836,261 + -1.2
836,261 + -1.4
836,261 + -0.2
836,262 - +0.9
836,262 - -1.0
836,273 + -0.5
836,274 - +1.2
836,274 - -0.9
836,274 - -1.1
836,274 - -2.3
836,353 - LRK53_RS03545 0.24 -1.1
836,571 + -0.4
836,571 + -1.1
836,571 + +1.0
836,572 - +1.7
836,588 + -0.5
836,588 + -1.6
836,588 + +0.4
836,588 + +1.2
836,588 + -1.1
836,588 + -0.7
836,588 + -0.8
836,589 - -0.4
836,589 - -0.9
836,589 - -0.9
836,589 - -0.8
836,589 - -0.8
836,589 - +0.2
836,589 - +0.2
836,888 + -2.4
836,888 + +0.2
836,888 + -0.9
836,888 + -0.8
836,888 + -0.3

Or see this region's nucleotide sequence