Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03330

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03320 and LRK53_RS03325 are separated by 42 nucleotidesLRK53_RS03325 and LRK53_RS03330 are separated by 292 nucleotidesLRK53_RS03330 and LRK53_RS03335 are separated by 157 nucleotides LRK53_RS03320: LRK53_RS03320 - glycerophosphoryl diester phosphodiesterase, at 784,598 to 785,054 _RS03320 LRK53_RS03325: LRK53_RS03325 - hypothetical protein, at 785,097 to 785,504 _RS03325 LRK53_RS03330: LRK53_RS03330 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 785,797 to 786,621 _RS03330 LRK53_RS03335: LRK53_RS03335 - aldo/keto reductase, at 786,779 to 787,771 _RS03335 Position (kb) 785 786 787Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 784.866 kb on + strand, within LRK53_RS03320at 784.867 kb on - strand, within LRK53_RS03320at 784.895 kb on - strand, within LRK53_RS03320at 784.968 kb on + strand, within LRK53_RS03320at 784.968 kb on + strand, within LRK53_RS03320at 784.968 kb on + strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 784.969 kb on - strand, within LRK53_RS03320at 785.052 kb on + strandat 785.053 kb on - strandat 785.053 kb on - strandat 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.164 kb on + strand, within LRK53_RS03325at 785.165 kb on - strand, within LRK53_RS03325at 785.165 kb on - strand, within LRK53_RS03325at 785.165 kb on - strand, within LRK53_RS03325at 785.165 kb on - strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.278 kb on + strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.279 kb on - strand, within LRK53_RS03325at 785.339 kb on - strand, within LRK53_RS03325at 785.339 kb on - strand, within LRK53_RS03325at 785.637 kb on + strandat 785.638 kb on - strandat 785.638 kb on - strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.652 kb on + strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.653 kb on - strandat 785.799 kb on - strandat 785.799 kb on - strandat 785.891 kb on + strand, within LRK53_RS03330at 785.892 kb on - strand, within LRK53_RS03330at 786.356 kb on + strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.357 kb on - strand, within LRK53_RS03330at 786.578 kb on + strandat 786.578 kb on + strandat 786.578 kb on + strandat 786.578 kb on + strandat 786.579 kb on - strandat 786.579 kb on - strandat 786.579 kb on - strandat 786.621 kb on + strandat 786.621 kb on + strandat 786.622 kb on - strandat 786.622 kb on - strandat 786.622 kb on - strandat 786.622 kb on - strandat 786.633 kb on + strandat 786.634 kb on - strandat 786.713 kb on - strandat 786.713 kb on - strandat 786.813 kb on + strandat 786.813 kb on + strandat 786.813 kb on + strandat 786.814 kb on - strandat 786.814 kb on - strandat 787.161 kb on + strand, within LRK53_RS03335at 787.161 kb on + strand, within LRK53_RS03335at 787.161 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.404 kb on + strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.405 kb on - strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.407 kb on + strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.408 kb on - strand, within LRK53_RS03335at 787.467 kb on + strand, within LRK53_RS03335at 787.467 kb on + strand, within LRK53_RS03335at 787.468 kb on - strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.605 kb on + strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335at 787.606 kb on - strand, within LRK53_RS03335

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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784,866 + LRK53_RS03320 0.59 +1.5
784,867 - LRK53_RS03320 0.59 +0.8
784,895 - LRK53_RS03320 0.65 +0.2
784,968 + LRK53_RS03320 0.81 -0.1
784,968 + LRK53_RS03320 0.81 -1.6
784,968 + LRK53_RS03320 0.81 -0.3
784,969 - LRK53_RS03320 0.81 -0.4
784,969 - LRK53_RS03320 0.81 -0.1
784,969 - LRK53_RS03320 0.81 -2.4
784,969 - LRK53_RS03320 0.81 -0.8
784,969 - LRK53_RS03320 0.81 +0.2
784,969 - LRK53_RS03320 0.81 +0.2
785,052 + +0.9
785,053 - +0.1
785,053 - -0.8
785,164 + LRK53_RS03325 0.16 -1.1
785,164 + LRK53_RS03325 0.16 +1.2
785,164 + LRK53_RS03325 0.16 +0.2
785,164 + LRK53_RS03325 0.16 -1.0
785,164 + LRK53_RS03325 0.16 +0.2
785,164 + LRK53_RS03325 0.16 -1.4
785,164 + LRK53_RS03325 0.16 +3.2
785,164 + LRK53_RS03325 0.16 -0.1
785,164 + LRK53_RS03325 0.16 -0.2
785,164 + LRK53_RS03325 0.16 +2.5
785,164 + LRK53_RS03325 0.16 -0.8
785,165 - LRK53_RS03325 0.17 -0.2
785,165 - LRK53_RS03325 0.17 -0.2
785,165 - LRK53_RS03325 0.17 +1.8
785,165 - LRK53_RS03325 0.17 -0.1
785,278 + LRK53_RS03325 0.44 +0.6
785,278 + LRK53_RS03325 0.44 -0.6
785,278 + LRK53_RS03325 0.44 -1.3
785,278 + LRK53_RS03325 0.44 -0.9
785,278 + LRK53_RS03325 0.44 -1.6
785,278 + LRK53_RS03325 0.44 -0.4
785,278 + LRK53_RS03325 0.44 +0.0
785,278 + LRK53_RS03325 0.44 +0.0
785,278 + LRK53_RS03325 0.44 +0.2
785,278 + LRK53_RS03325 0.44 -0.2
785,278 + LRK53_RS03325 0.44 -1.1
785,278 + LRK53_RS03325 0.44 -0.6
785,278 + LRK53_RS03325 0.44 -0.4
785,279 - LRK53_RS03325 0.45 -1.6
785,279 - LRK53_RS03325 0.45 +0.9
785,279 - LRK53_RS03325 0.45 -0.6
785,279 - LRK53_RS03325 0.45 +0.6
785,279 - LRK53_RS03325 0.45 -0.3
785,279 - LRK53_RS03325 0.45 -0.3
785,279 - LRK53_RS03325 0.45 -1.4
785,279 - LRK53_RS03325 0.45 +0.6
785,279 - LRK53_RS03325 0.45 +1.3
785,339 - LRK53_RS03325 0.59 +0.3
785,339 - LRK53_RS03325 0.59 +0.5
785,637 + +0.2
785,638 - +0.5
785,638 - -1.1
785,652 + -0.8
785,652 + +0.8
785,652 + +3.5
785,652 + -0.3
785,652 + -1.3
785,652 + +1.2
785,652 + +0.4
785,652 + +1.9
785,652 + +1.2
785,652 + -0.5
785,653 - +0.4
785,653 - +0.3
785,653 - +1.2
785,653 - +1.2
785,653 - +0.0
785,653 - -0.4
785,653 - -1.0
785,653 - +1.6
785,653 - +0.3
785,653 - -1.1
785,799 - -0.4
785,799 - +0.8
785,891 + LRK53_RS03330 0.11 +0.2
785,892 - LRK53_RS03330 0.12 -1.4
786,356 + LRK53_RS03330 0.68 -0.8
786,357 - LRK53_RS03330 0.68 +1.2
786,357 - LRK53_RS03330 0.68 +2.2
786,357 - LRK53_RS03330 0.68 -0.1
786,578 + +0.0
786,578 + -0.6
786,578 + +0.1
786,578 + -1.6
786,579 - +1.2
786,579 - -2.3
786,579 - -1.2
786,621 + -2.0
786,621 + +0.2
786,622 - +0.2
786,622 - +1.2
786,622 - -0.2
786,622 - -1.6
786,633 + -1.4
786,634 - -1.4
786,713 - -0.9
786,713 - +2.8
786,813 + -2.9
786,813 + -0.2
786,813 + -1.6
786,814 - -0.9
786,814 - +0.9
787,161 + LRK53_RS03335 0.38 -1.1
787,161 + LRK53_RS03335 0.38 +0.1
787,161 + LRK53_RS03335 0.38 +0.2
787,404 + LRK53_RS03335 0.63 -0.7
787,404 + LRK53_RS03335 0.63 +0.0
787,404 + LRK53_RS03335 0.63 -0.7
787,404 + LRK53_RS03335 0.63 +1.8
787,404 + LRK53_RS03335 0.63 -0.8
787,405 - LRK53_RS03335 0.63 -0.4
787,405 - LRK53_RS03335 0.63 -1.6
787,405 - LRK53_RS03335 0.63 +0.2
787,405 - LRK53_RS03335 0.63 -2.5
787,405 - LRK53_RS03335 0.63 -0.8
787,407 + LRK53_RS03335 0.63 -0.6
787,407 + LRK53_RS03335 0.63 -1.1
787,407 + LRK53_RS03335 0.63 +0.9
787,407 + LRK53_RS03335 0.63 -1.0
787,407 + LRK53_RS03335 0.63 -0.1
787,407 + LRK53_RS03335 0.63 +2.0
787,407 + LRK53_RS03335 0.63 -0.5
787,407 + LRK53_RS03335 0.63 -1.7
787,407 + LRK53_RS03335 0.63 +2.2
787,407 + LRK53_RS03335 0.63 +0.6
787,407 + LRK53_RS03335 0.63 +0.4
787,407 + LRK53_RS03335 0.63 +2.2
787,407 + LRK53_RS03335 0.63 -2.0
787,407 + LRK53_RS03335 0.63 -0.8
787,407 + LRK53_RS03335 0.63 -0.2
787,407 + LRK53_RS03335 0.63 -0.4
787,408 - LRK53_RS03335 0.63 +0.6
787,408 - LRK53_RS03335 0.63 +0.3
787,408 - LRK53_RS03335 0.63 -0.4
787,408 - LRK53_RS03335 0.63 -0.8
787,408 - LRK53_RS03335 0.63 +0.8
787,408 - LRK53_RS03335 0.63 +1.2
787,408 - LRK53_RS03335 0.63 +0.2
787,408 - LRK53_RS03335 0.63 +1.8
787,408 - LRK53_RS03335 0.63 -0.8
787,408 - LRK53_RS03335 0.63 -0.0
787,408 - LRK53_RS03335 0.63 +1.4
787,408 - LRK53_RS03335 0.63 -1.2
787,408 - LRK53_RS03335 0.63 +1.2
787,408 - LRK53_RS03335 0.63 -0.8
787,408 - LRK53_RS03335 0.63 -1.1
787,408 - LRK53_RS03335 0.63 -1.7
787,467 + LRK53_RS03335 0.69 -1.4
787,467 + LRK53_RS03335 0.69 +2.2
787,468 - LRK53_RS03335 0.69 -1.1
787,605 + LRK53_RS03335 0.83 +2.2
787,605 + LRK53_RS03335 0.83 -0.8
787,605 + LRK53_RS03335 0.83 +0.2
787,605 + LRK53_RS03335 0.83 -1.6
787,605 + LRK53_RS03335 0.83 -0.8
787,605 + LRK53_RS03335 0.83 +1.3
787,605 + LRK53_RS03335 0.83 -2.2
787,605 + LRK53_RS03335 0.83 +0.6
787,605 + LRK53_RS03335 0.83 -0.8
787,605 + LRK53_RS03335 0.83 +0.8
787,605 + LRK53_RS03335 0.83 +1.6
787,605 + LRK53_RS03335 0.83 +0.0
787,605 + LRK53_RS03335 0.83 -0.4
787,605 + LRK53_RS03335 0.83 -1.1
787,605 + LRK53_RS03335 0.83 -1.3
787,605 + LRK53_RS03335 0.83 +1.2
787,606 - LRK53_RS03335 0.83 -0.0
787,606 - LRK53_RS03335 0.83 -0.2
787,606 - LRK53_RS03335 0.83 -0.8
787,606 - LRK53_RS03335 0.83 +0.8
787,606 - LRK53_RS03335 0.83 -0.5
787,606 - LRK53_RS03335 0.83 +0.2
787,606 - LRK53_RS03335 0.83 +0.4
787,606 - LRK53_RS03335 0.83 -1.4
787,606 - LRK53_RS03335 0.83 +1.2
787,606 - LRK53_RS03335 0.83 -2.3
787,606 - LRK53_RS03335 0.83 +0.2
787,606 - LRK53_RS03335 0.83 +0.6
787,606 - LRK53_RS03335 0.83 -0.4
787,606 - LRK53_RS03335 0.83 +0.2
787,606 - LRK53_RS03335 0.83 +0.2

Or see this region's nucleotide sequence