Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03180 and LRK53_RS03185 are separated by 31 nucleotides LRK53_RS03185 and LRK53_RS03190 overlap by 4 nucleotides LRK53_RS03190 and LRK53_RS03195 overlap by 23 nucleotides LRK53_RS03195 and LRK53_RS03200 are separated by 5 nucleotides
LRK53_RS03180: LRK53_RS03180 - sugar phosphate isomerase/epimerase, at 743,245 to 744,486
_RS03180
LRK53_RS03185: LRK53_RS03185 - S-ribosylhomocysteine lyase, at 744,518 to 745,000
_RS03185
LRK53_RS03190: LRK53_RS03190 - sedoheptulose 7-phosphate cyclase, at 744,997 to 746,148
_RS03190
LRK53_RS03195: LRK53_RS03195 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 746,126 to 746,836
_RS03195
LRK53_RS03200: LRK53_RS03200 - UbiA family prenyltransferase, at 746,842 to 747,735
_RS03200
Position (kb) 744
745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 744.001 kb on + strand, within LRK53_RS03180 at 744.001 kb on + strand, within LRK53_RS03180 at 744.001 kb on + strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.031 kb on + strand, within LRK53_RS03180 at 744.031 kb on + strand, within LRK53_RS03180 at 744.031 kb on + strand, within LRK53_RS03180 at 744.031 kb on + strand, within LRK53_RS03180 at 744.032 kb on - strand, within LRK53_RS03180 at 744.127 kb on + strand, within LRK53_RS03180 at 744.139 kb on + strand, within LRK53_RS03180 at 744.139 kb on + strand, within LRK53_RS03180 at 744.139 kb on + strand, within LRK53_RS03180 at 744.178 kb on + strand, within LRK53_RS03180 at 744.178 kb on + strand, within LRK53_RS03180 at 744.178 kb on + strand, within LRK53_RS03180 at 744.179 kb on - strand, within LRK53_RS03180 at 744.179 kb on - strand, within LRK53_RS03180 at 744.179 kb on - strand, within LRK53_RS03180 at 744.409 kb on + strand at 744.409 kb on + strand at 744.409 kb on + strand at 744.409 kb on + strand at 744.410 kb on - strand at 744.410 kb on - strand at 744.451 kb on + strand at 744.641 kb on + strand, within LRK53_RS03185 at 744.797 kb on + strand, within LRK53_RS03185 at 744.797 kb on + strand, within LRK53_RS03185 at 744.798 kb on - strand, within LRK53_RS03185 at 744.890 kb on + strand, within LRK53_RS03185 at 744.891 kb on - strand, within LRK53_RS03185 at 744.963 kb on + strand at 744.963 kb on + strand at 744.963 kb on + strand at 744.964 kb on - strand at 744.964 kb on - strand at 744.964 kb on - strand at 744.964 kb on - strand at 745.051 kb on + strand at 745.051 kb on + strand at 745.052 kb on - strand at 745.052 kb on - strand at 745.052 kb on - strand at 745.189 kb on + strand, within LRK53_RS03190 at 745.189 kb on + strand, within LRK53_RS03190 at 745.355 kb on + strand, within LRK53_RS03190 at 745.355 kb on + strand, within LRK53_RS03190 at 745.355 kb on + strand, within LRK53_RS03190 at 745.356 kb on - strand, within LRK53_RS03190 at 745.379 kb on - strand, within LRK53_RS03190 at 745.379 kb on - strand, within LRK53_RS03190 at 745.426 kb on + strand, within LRK53_RS03190 at 745.427 kb on - strand, within LRK53_RS03190 at 745.427 kb on - strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.783 kb on + strand, within LRK53_RS03190 at 745.783 kb on + strand, within LRK53_RS03190 at 745.784 kb on - strand, within LRK53_RS03190 at 745.784 kb on - strand, within LRK53_RS03190 at 746.097 kb on + strand at 746.097 kb on + strand at 746.097 kb on + strand at 746.097 kb on + strand at 746.097 kb on + strand at 746.097 kb on + strand at 746.098 kb on - strand at 746.098 kb on - strand at 746.098 kb on - strand at 746.098 kb on - strand at 746.285 kb on - strand, within LRK53_RS03195 at 746.633 kb on + strand, within LRK53_RS03195 at 746.633 kb on + strand, within LRK53_RS03195 at 746.633 kb on + strand, within LRK53_RS03195 at 746.633 kb on + strand, within LRK53_RS03195 at 746.633 kb on + strand, within LRK53_RS03195 at 746.633 kb on + strand, within LRK53_RS03195 at 746.634 kb on - strand, within LRK53_RS03195 at 746.634 kb on - strand, within LRK53_RS03195 at 746.634 kb on - strand, within LRK53_RS03195 at 746.634 kb on - strand, within LRK53_RS03195 at 746.634 kb on - strand, within LRK53_RS03195 at 746.634 kb on - strand, within LRK53_RS03195 at 746.634 kb on - strand, within LRK53_RS03195 at 746.669 kb on + strand, within LRK53_RS03195 at 746.669 kb on + strand, within LRK53_RS03195 at 746.670 kb on - strand, within LRK53_RS03195 at 746.670 kb on - strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.753 kb on + strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.754 kb on - strand, within LRK53_RS03195 at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.807 kb on + strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.808 kb on - strand at 746.984 kb on - strand, within LRK53_RS03200 at 746.984 kb on - strand, within LRK53_RS03200 at 746.985 kb on + strand, within LRK53_RS03200 at 746.985 kb on + strand, within LRK53_RS03200 at 746.986 kb on - strand, within LRK53_RS03200 at 746.986 kb on - strand, within LRK53_RS03200 at 746.986 kb on - strand, within LRK53_RS03200 at 746.995 kb on + strand, within LRK53_RS03200 at 746.995 kb on + strand, within LRK53_RS03200 at 746.995 kb on + strand, within LRK53_RS03200 at 746.995 kb on + strand, within LRK53_RS03200 at 746.995 kb on + strand, within LRK53_RS03200 at 746.996 kb on - strand, within LRK53_RS03200 at 746.996 kb on - strand, within LRK53_RS03200 at 746.996 kb on - strand, within LRK53_RS03200 at 746.996 kb on - strand, within LRK53_RS03200
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 744,001 + LRK53_RS03180 0.61 -3.0 744,001 + LRK53_RS03180 0.61 +0.0 744,001 + LRK53_RS03180 0.61 -1.8 744,002 - LRK53_RS03180 0.61 +0.2 744,002 - LRK53_RS03180 0.61 -0.3 744,002 - LRK53_RS03180 0.61 -0.7 744,002 - LRK53_RS03180 0.61 -0.8 744,002 - LRK53_RS03180 0.61 +0.6 744,031 + LRK53_RS03180 0.63 -0.3 744,031 + LRK53_RS03180 0.63 +2.3 744,031 + LRK53_RS03180 0.63 +0.7 744,031 + LRK53_RS03180 0.63 +0.6 744,032 - LRK53_RS03180 0.63 -0.6 744,127 + LRK53_RS03180 0.71 -0.5 744,139 + LRK53_RS03180 0.72 +1.6 744,139 + LRK53_RS03180 0.72 +0.4 744,139 + LRK53_RS03180 0.72 -0.2 744,178 + LRK53_RS03180 0.75 +0.0 744,178 + LRK53_RS03180 0.75 +0.8 744,178 + LRK53_RS03180 0.75 -1.1 744,179 - LRK53_RS03180 0.75 +2.0 744,179 - LRK53_RS03180 0.75 -0.1 744,179 - LRK53_RS03180 0.75 +1.6 744,409 + +0.6 744,409 + +0.6 744,409 + -2.0 744,409 + -0.6 744,410 - -2.0 744,410 - -0.9 744,451 + -1.6 744,641 + LRK53_RS03185 0.25 -1.4 744,797 + LRK53_RS03185 0.58 +0.0 744,797 + LRK53_RS03185 0.58 -2.8 744,798 - LRK53_RS03185 0.58 -0.6 744,890 + LRK53_RS03185 0.77 -0.3 744,891 - LRK53_RS03185 0.77 -0.1 744,963 + -0.5 744,963 + -0.6 744,963 + -1.3 744,964 - -0.6 744,964 - +0.6 744,964 - +0.0 744,964 - +1.0 745,051 + -0.4 745,051 + +0.1 745,052 - +0.0 745,052 - -1.0 745,052 - +1.4 745,189 + LRK53_RS03190 0.17 +1.0 745,189 + LRK53_RS03190 0.17 +0.4 745,355 + LRK53_RS03190 0.31 -1.0 745,355 + LRK53_RS03190 0.31 +2.2 745,355 + LRK53_RS03190 0.31 -0.9 745,356 - LRK53_RS03190 0.31 -0.3 745,379 - LRK53_RS03190 0.33 -0.5 745,379 - LRK53_RS03190 0.33 +0.0 745,426 + LRK53_RS03190 0.37 +0.4 745,427 - LRK53_RS03190 0.37 -2.7 745,427 - LRK53_RS03190 0.37 -1.9 745,773 + LRK53_RS03190 0.67 +0.3 745,773 + LRK53_RS03190 0.67 +0.3 745,773 + LRK53_RS03190 0.67 -2.1 745,773 + LRK53_RS03190 0.67 -0.7 745,773 + LRK53_RS03190 0.67 +3.3 745,773 + LRK53_RS03190 0.67 -0.4 745,773 + LRK53_RS03190 0.67 +0.0 745,773 + LRK53_RS03190 0.67 -0.6 745,774 - LRK53_RS03190 0.67 +0.3 745,774 - LRK53_RS03190 0.67 -2.8 745,774 - LRK53_RS03190 0.67 +0.0 745,774 - LRK53_RS03190 0.67 -0.6 745,774 - LRK53_RS03190 0.67 +1.3 745,774 - LRK53_RS03190 0.67 -1.3 745,783 + LRK53_RS03190 0.68 +2.3 745,783 + LRK53_RS03190 0.68 -1.0 745,784 - LRK53_RS03190 0.68 +1.7 745,784 - LRK53_RS03190 0.68 +0.9 746,097 + +1.6 746,097 + -1.9 746,097 + +1.0 746,097 + -1.3 746,097 + -0.3 746,097 + -0.4 746,098 - -0.6 746,098 - -1.4 746,098 - +0.1 746,098 - +1.0 746,285 - LRK53_RS03195 0.22 -1.5 746,633 + LRK53_RS03195 0.71 +1.4 746,633 + LRK53_RS03195 0.71 -1.0 746,633 + LRK53_RS03195 0.71 +0.7 746,633 + LRK53_RS03195 0.71 -0.4 746,633 + LRK53_RS03195 0.71 -2.2 746,633 + LRK53_RS03195 0.71 +1.0 746,634 - LRK53_RS03195 0.71 +0.0 746,634 - LRK53_RS03195 0.71 -0.8 746,634 - LRK53_RS03195 0.71 -1.2 746,634 - LRK53_RS03195 0.71 -0.8 746,634 - LRK53_RS03195 0.71 -0.6 746,634 - LRK53_RS03195 0.71 -0.9 746,634 - LRK53_RS03195 0.71 +1.0 746,669 + LRK53_RS03195 0.76 -1.2 746,669 + LRK53_RS03195 0.76 +2.6 746,670 - LRK53_RS03195 0.77 -0.6 746,670 - LRK53_RS03195 0.77 +1.0 746,753 + LRK53_RS03195 0.88 -0.7 746,753 + LRK53_RS03195 0.88 -0.6 746,753 + LRK53_RS03195 0.88 +0.3 746,753 + LRK53_RS03195 0.88 -0.7 746,753 + LRK53_RS03195 0.88 +0.0 746,753 + LRK53_RS03195 0.88 -0.6 746,753 + LRK53_RS03195 0.88 -0.6 746,753 + LRK53_RS03195 0.88 -1.6 746,753 + LRK53_RS03195 0.88 -0.9 746,753 + LRK53_RS03195 0.88 -0.4 746,753 + LRK53_RS03195 0.88 +0.0 746,753 + LRK53_RS03195 0.88 -2.2 746,753 + LRK53_RS03195 0.88 -0.9 746,753 + LRK53_RS03195 0.88 +0.7 746,753 + LRK53_RS03195 0.88 -2.3 746,754 - LRK53_RS03195 0.88 +0.4 746,754 - LRK53_RS03195 0.88 -1.2 746,754 - LRK53_RS03195 0.88 -2.3 746,754 - LRK53_RS03195 0.88 +0.1 746,754 - LRK53_RS03195 0.88 +1.0 746,754 - LRK53_RS03195 0.88 -0.2 746,754 - LRK53_RS03195 0.88 +0.0 746,754 - LRK53_RS03195 0.88 -0.0 746,754 - LRK53_RS03195 0.88 -0.7 746,754 - LRK53_RS03195 0.88 +1.0 746,754 - LRK53_RS03195 0.88 +1.4 746,754 - LRK53_RS03195 0.88 +0.0 746,754 - LRK53_RS03195 0.88 -1.0 746,754 - LRK53_RS03195 0.88 +0.4 746,754 - LRK53_RS03195 0.88 +1.7 746,754 - LRK53_RS03195 0.88 +0.2 746,807 + -0.7 746,807 + -1.2 746,807 + +1.0 746,807 + -0.7 746,807 + -0.1 746,807 + +0.0 746,807 + -0.6 746,807 + -0.3 746,807 + +1.0 746,807 + -0.6 746,807 + -0.2 746,807 + -0.6 746,807 + -0.6 746,807 + -0.3 746,808 - -2.4 746,808 - -0.6 746,808 - -0.9 746,808 - +0.0 746,808 - +0.7 746,808 - -2.2 746,808 - -0.3 746,808 - -0.7 746,808 - -1.4 746,808 - +0.4 746,808 - -0.6 746,808 - -0.4 746,808 - +1.0 746,808 - +1.0 746,808 - -0.6 746,808 - +0.5 746,808 - +0.3 746,808 - +0.4 746,808 - -0.2 746,808 - -1.0 746,808 - +0.4 746,984 - LRK53_RS03200 0.16 +1.0 746,984 - LRK53_RS03200 0.16 -1.8 746,985 + LRK53_RS03200 0.16 -0.6 746,985 + LRK53_RS03200 0.16 -0.5 746,986 - LRK53_RS03200 0.16 -0.2 746,986 - LRK53_RS03200 0.16 -1.2 746,986 - LRK53_RS03200 0.16 +0.7 746,995 + LRK53_RS03200 0.17 +0.0 746,995 + LRK53_RS03200 0.17 +0.3 746,995 + LRK53_RS03200 0.17 +1.0 746,995 + LRK53_RS03200 0.17 -2.6 746,995 + LRK53_RS03200 0.17 +1.0 746,996 - LRK53_RS03200 0.17 -2.4 746,996 - LRK53_RS03200 0.17 +0.1 746,996 - LRK53_RS03200 0.17 -1.0 746,996 - LRK53_RS03200 0.17 -0.9
Or see this region's nucleotide sequence