Experiment: NLDM_defined low phosphorus; midlog
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03180 and LRK53_RS03185 are separated by 31 nucleotides LRK53_RS03185 and LRK53_RS03190 overlap by 4 nucleotides
LRK53_RS03180: LRK53_RS03180 - sugar phosphate isomerase/epimerase, at 743,245 to 744,486
_RS03180
LRK53_RS03185: LRK53_RS03185 - S-ribosylhomocysteine lyase, at 744,518 to 745,000
_RS03185
LRK53_RS03190: LRK53_RS03190 - sedoheptulose 7-phosphate cyclase, at 744,997 to 746,148
_RS03190
Position (kb) 744
745
746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.737 kb on + strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.738 kb on - strand, within LRK53_RS03180 at 743.824 kb on + strand, within LRK53_RS03180 at 743.825 kb on - strand, within LRK53_RS03180 at 743.825 kb on - strand, within LRK53_RS03180 at 743.842 kb on + strand, within LRK53_RS03180 at 743.842 kb on + strand, within LRK53_RS03180 at 743.842 kb on + strand, within LRK53_RS03180 at 743.843 kb on - strand, within LRK53_RS03180 at 743.843 kb on - strand, within LRK53_RS03180 at 743.843 kb on - strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.980 kb on + strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 743.981 kb on - strand, within LRK53_RS03180 at 744.001 kb on + strand, within LRK53_RS03180 at 744.001 kb on + strand, within LRK53_RS03180 at 744.001 kb on + strand, within LRK53_RS03180 at 744.001 kb on + strand, within LRK53_RS03180 at 744.001 kb on + strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.002 kb on - strand, within LRK53_RS03180 at 744.031 kb on + strand, within LRK53_RS03180 at 744.031 kb on + strand, within LRK53_RS03180 at 744.031 kb on + strand, within LRK53_RS03180 at 744.032 kb on - strand, within LRK53_RS03180 at 744.127 kb on + strand, within LRK53_RS03180 at 744.127 kb on + strand, within LRK53_RS03180 at 744.128 kb on - strand, within LRK53_RS03180 at 744.139 kb on + strand, within LRK53_RS03180 at 744.178 kb on + strand, within LRK53_RS03180 at 744.178 kb on + strand, within LRK53_RS03180 at 744.178 kb on + strand, within LRK53_RS03180 at 744.178 kb on + strand, within LRK53_RS03180 at 744.178 kb on + strand, within LRK53_RS03180 at 744.179 kb on - strand, within LRK53_RS03180 at 744.179 kb on - strand, within LRK53_RS03180 at 744.179 kb on - strand, within LRK53_RS03180 at 744.409 kb on + strand at 744.409 kb on + strand at 744.409 kb on + strand at 744.409 kb on + strand at 744.451 kb on + strand at 744.451 kb on + strand at 744.641 kb on + strand, within LRK53_RS03185 at 744.797 kb on + strand, within LRK53_RS03185 at 744.797 kb on + strand, within LRK53_RS03185 at 744.798 kb on - strand, within LRK53_RS03185 at 744.890 kb on + strand, within LRK53_RS03185 at 744.891 kb on - strand, within LRK53_RS03185 at 744.963 kb on + strand at 744.963 kb on + strand at 744.963 kb on + strand at 744.964 kb on - strand at 744.964 kb on - strand at 744.964 kb on - strand at 745.051 kb on + strand at 745.051 kb on + strand at 745.051 kb on + strand at 745.052 kb on - strand at 745.052 kb on - strand at 745.189 kb on + strand, within LRK53_RS03190 at 745.355 kb on + strand, within LRK53_RS03190 at 745.355 kb on + strand, within LRK53_RS03190 at 745.355 kb on + strand, within LRK53_RS03190 at 745.356 kb on - strand, within LRK53_RS03190 at 745.426 kb on + strand, within LRK53_RS03190 at 745.427 kb on - strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.773 kb on + strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.774 kb on - strand, within LRK53_RS03190 at 745.783 kb on + strand, within LRK53_RS03190 at 745.784 kb on - strand, within LRK53_RS03190 at 745.784 kb on - strand, within LRK53_RS03190 at 745.784 kb on - strand, within LRK53_RS03190
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog remove 743,737 + LRK53_RS03180 0.40 -0.4 743,737 + LRK53_RS03180 0.40 +0.0 743,737 + LRK53_RS03180 0.40 -0.9 743,737 + LRK53_RS03180 0.40 +0.9 743,737 + LRK53_RS03180 0.40 +1.2 743,737 + LRK53_RS03180 0.40 -0.6 743,737 + LRK53_RS03180 0.40 +1.2 743,737 + LRK53_RS03180 0.40 +3.2 743,737 + LRK53_RS03180 0.40 -0.8 743,737 + LRK53_RS03180 0.40 -0.9 743,737 + LRK53_RS03180 0.40 -1.6 743,737 + LRK53_RS03180 0.40 -0.7 743,737 + LRK53_RS03180 0.40 -0.2 743,737 + LRK53_RS03180 0.40 -0.8 743,737 + LRK53_RS03180 0.40 -0.8 743,737 + LRK53_RS03180 0.40 -0.6 743,737 + LRK53_RS03180 0.40 +0.9 743,737 + LRK53_RS03180 0.40 +2.2 743,737 + LRK53_RS03180 0.40 -1.1 743,737 + LRK53_RS03180 0.40 +0.4 743,737 + LRK53_RS03180 0.40 -0.0 743,737 + LRK53_RS03180 0.40 +0.5 743,737 + LRK53_RS03180 0.40 -0.1 743,737 + LRK53_RS03180 0.40 -0.7 743,737 + LRK53_RS03180 0.40 -0.3 743,737 + LRK53_RS03180 0.40 -3.0 743,737 + LRK53_RS03180 0.40 -0.3 743,737 + LRK53_RS03180 0.40 -0.8 743,737 + LRK53_RS03180 0.40 -0.9 743,737 + LRK53_RS03180 0.40 -1.8 743,737 + LRK53_RS03180 0.40 -0.6 743,738 - LRK53_RS03180 0.40 +0.6 743,738 - LRK53_RS03180 0.40 -0.5 743,738 - LRK53_RS03180 0.40 +1.5 743,738 - LRK53_RS03180 0.40 +0.9 743,738 - LRK53_RS03180 0.40 -1.3 743,738 - LRK53_RS03180 0.40 +1.2 743,738 - LRK53_RS03180 0.40 +1.2 743,738 - LRK53_RS03180 0.40 +1.6 743,738 - LRK53_RS03180 0.40 -0.3 743,738 - LRK53_RS03180 0.40 -0.8 743,738 - LRK53_RS03180 0.40 +0.3 743,738 - LRK53_RS03180 0.40 -1.4 743,738 - LRK53_RS03180 0.40 -2.0 743,738 - LRK53_RS03180 0.40 -1.3 743,738 - LRK53_RS03180 0.40 -1.4 743,738 - LRK53_RS03180 0.40 -0.4 743,738 - LRK53_RS03180 0.40 -1.6 743,738 - LRK53_RS03180 0.40 -1.8 743,738 - LRK53_RS03180 0.40 -1.1 743,738 - LRK53_RS03180 0.40 +0.9 743,738 - LRK53_RS03180 0.40 +1.2 743,738 - LRK53_RS03180 0.40 +1.2 743,738 - LRK53_RS03180 0.40 +1.0 743,738 - LRK53_RS03180 0.40 -0.4 743,738 - LRK53_RS03180 0.40 +0.1 743,738 - LRK53_RS03180 0.40 +2.2 743,738 - LRK53_RS03180 0.40 -0.8 743,738 - LRK53_RS03180 0.40 +1.2 743,738 - LRK53_RS03180 0.40 -0.2 743,738 - LRK53_RS03180 0.40 -0.6 743,738 - LRK53_RS03180 0.40 +0.5 743,738 - LRK53_RS03180 0.40 +1.6 743,738 - LRK53_RS03180 0.40 +0.6 743,738 - LRK53_RS03180 0.40 -1.8 743,738 - LRK53_RS03180 0.40 -0.3 743,738 - LRK53_RS03180 0.40 +0.2 743,738 - LRK53_RS03180 0.40 +0.2 743,738 - LRK53_RS03180 0.40 -2.1 743,738 - LRK53_RS03180 0.40 -2.0 743,738 - LRK53_RS03180 0.40 -1.4 743,738 - LRK53_RS03180 0.40 -2.3 743,738 - LRK53_RS03180 0.40 +1.2 743,738 - LRK53_RS03180 0.40 -0.1 743,738 - LRK53_RS03180 0.40 +0.3 743,738 - LRK53_RS03180 0.40 +0.5 743,738 - LRK53_RS03180 0.40 -1.1 743,738 - LRK53_RS03180 0.40 +0.2 743,738 - LRK53_RS03180 0.40 +0.7 743,738 - LRK53_RS03180 0.40 -0.2 743,738 - LRK53_RS03180 0.40 -1.1 743,738 - LRK53_RS03180 0.40 +2.2 743,738 - LRK53_RS03180 0.40 +0.2 743,738 - LRK53_RS03180 0.40 -1.0 743,738 - LRK53_RS03180 0.40 -2.0 743,824 + LRK53_RS03180 0.47 +1.0 743,825 - LRK53_RS03180 0.47 +0.2 743,825 - LRK53_RS03180 0.47 -1.4 743,842 + LRK53_RS03180 0.48 -1.2 743,842 + LRK53_RS03180 0.48 -0.6 743,842 + LRK53_RS03180 0.48 +0.7 743,843 - LRK53_RS03180 0.48 +0.6 743,843 - LRK53_RS03180 0.48 +2.2 743,843 - LRK53_RS03180 0.48 +2.2 743,980 + LRK53_RS03180 0.59 -1.1 743,980 + LRK53_RS03180 0.59 -0.5 743,980 + LRK53_RS03180 0.59 +0.4 743,980 + LRK53_RS03180 0.59 -1.0 743,980 + LRK53_RS03180 0.59 +0.2 743,980 + LRK53_RS03180 0.59 -0.0 743,980 + LRK53_RS03180 0.59 -0.5 743,980 + LRK53_RS03180 0.59 +1.2 743,980 + LRK53_RS03180 0.59 +0.7 743,980 + LRK53_RS03180 0.59 +1.2 743,980 + LRK53_RS03180 0.59 -0.6 743,980 + LRK53_RS03180 0.59 -1.1 743,980 + LRK53_RS03180 0.59 -0.0 743,981 - LRK53_RS03180 0.59 +1.8 743,981 - LRK53_RS03180 0.59 -0.2 743,981 - LRK53_RS03180 0.59 -0.1 743,981 - LRK53_RS03180 0.59 +0.1 743,981 - LRK53_RS03180 0.59 -0.4 743,981 - LRK53_RS03180 0.59 -1.6 743,981 - LRK53_RS03180 0.59 +0.2 743,981 - LRK53_RS03180 0.59 +0.1 743,981 - LRK53_RS03180 0.59 +1.1 744,001 + LRK53_RS03180 0.61 -2.7 744,001 + LRK53_RS03180 0.61 -2.8 744,001 + LRK53_RS03180 0.61 -0.1 744,001 + LRK53_RS03180 0.61 +0.2 744,001 + LRK53_RS03180 0.61 -1.6 744,002 - LRK53_RS03180 0.61 +0.4 744,002 - LRK53_RS03180 0.61 +1.2 744,002 - LRK53_RS03180 0.61 -0.6 744,002 - LRK53_RS03180 0.61 +2.2 744,002 - LRK53_RS03180 0.61 -0.6 744,002 - LRK53_RS03180 0.61 +0.8 744,031 + LRK53_RS03180 0.63 +0.9 744,031 + LRK53_RS03180 0.63 -0.1 744,031 + LRK53_RS03180 0.63 +0.8 744,032 - LRK53_RS03180 0.63 -0.5 744,127 + LRK53_RS03180 0.71 -0.3 744,127 + LRK53_RS03180 0.71 +0.2 744,128 - LRK53_RS03180 0.71 +0.2 744,139 + LRK53_RS03180 0.72 +1.8 744,178 + LRK53_RS03180 0.75 +0.2 744,178 + LRK53_RS03180 0.75 +0.2 744,178 + LRK53_RS03180 0.75 +0.2 744,178 + LRK53_RS03180 0.75 +1.0 744,178 + LRK53_RS03180 0.75 -1.0 744,179 - LRK53_RS03180 0.75 +0.0 744,179 - LRK53_RS03180 0.75 +2.2 744,179 - LRK53_RS03180 0.75 +1.8 744,409 + +0.8 744,409 + +0.7 744,409 + -1.8 744,409 + -0.4 744,451 + -1.4 744,451 + +0.2 744,641 + LRK53_RS03185 0.25 -1.3 744,797 + LRK53_RS03185 0.58 +0.2 744,797 + LRK53_RS03185 0.58 -2.6 744,798 - LRK53_RS03185 0.58 -0.4 744,890 + LRK53_RS03185 0.77 -0.8 744,891 - LRK53_RS03185 0.77 +0.0 744,963 + -0.3 744,963 + -0.4 744,963 + -1.1 744,964 - -0.4 744,964 - +0.2 744,964 - +1.2 745,051 + -0.3 745,051 + +0.9 745,051 + +0.3 745,052 - +0.2 745,052 - -0.8 745,189 + LRK53_RS03190 0.17 +1.2 745,355 + LRK53_RS03190 0.31 -0.8 745,355 + LRK53_RS03190 0.31 +2.2 745,355 + LRK53_RS03190 0.31 -0.7 745,356 - LRK53_RS03190 0.31 -0.1 745,426 + LRK53_RS03190 0.37 +0.6 745,427 - LRK53_RS03190 0.37 -2.5 745,773 + LRK53_RS03190 0.67 +0.5 745,773 + LRK53_RS03190 0.67 +0.4 745,773 + LRK53_RS03190 0.67 -1.9 745,773 + LRK53_RS03190 0.67 -0.4 745,773 + LRK53_RS03190 0.67 +1.2 745,773 + LRK53_RS03190 0.67 -0.5 745,773 + LRK53_RS03190 0.67 +3.5 745,773 + LRK53_RS03190 0.67 -0.2 745,773 + LRK53_RS03190 0.67 +0.2 745,773 + LRK53_RS03190 0.67 +1.2 745,774 - LRK53_RS03190 0.67 +0.5 745,774 - LRK53_RS03190 0.67 -2.6 745,774 - LRK53_RS03190 0.67 +0.2 745,774 - LRK53_RS03190 0.67 -0.5 745,774 - LRK53_RS03190 0.67 -0.7 745,783 + LRK53_RS03190 0.68 +0.2 745,784 - LRK53_RS03190 0.68 +1.9 745,784 - LRK53_RS03190 0.68 -0.1 745,784 - LRK53_RS03190 0.68 +1.1
Or see this region's nucleotide sequence