Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03100

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03095 and LRK53_RS03100 are separated by 261 nucleotidesLRK53_RS03100 and LRK53_RS03105 overlap by 4 nucleotidesLRK53_RS03105 and LRK53_RS03110 are separated by 157 nucleotides LRK53_RS03095: LRK53_RS03095 - dihydroxy-acid dehydratase, at 722,284 to 724,005 _RS03095 LRK53_RS03100: LRK53_RS03100 - 3-isopropylmalate dehydrogenase, at 724,267 to 725,364 _RS03100 LRK53_RS03105: LRK53_RS03105 - 3-isopropylmalate dehydratase small subunit, at 725,361 to 726,005 _RS03105 LRK53_RS03110: LRK53_RS03110 - 3-isopropylmalate dehydratase large subunit, at 726,163 to 727,575 _RS03110 Position (kb) 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 723.584 kb on + strand, within LRK53_RS03095at 723.741 kb on - strand, within LRK53_RS03095at 723.920 kb on - strandat 724.111 kb on + strandat 724.111 kb on + strandat 724.111 kb on + strandat 724.111 kb on + strandat 724.112 kb on - strandat 724.554 kb on - strand, within LRK53_RS03100at 724.674 kb on - strand, within LRK53_RS03100at 724.780 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.892 kb on + strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.893 kb on - strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.943 kb on + strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.944 kb on - strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.975 kb on + strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 724.976 kb on - strand, within LRK53_RS03100at 725.035 kb on + strand, within LRK53_RS03100at 725.035 kb on + strand, within LRK53_RS03100at 725.035 kb on + strand, within LRK53_RS03100at 725.036 kb on - strand, within LRK53_RS03100at 725.036 kb on - strand, within LRK53_RS03100at 725.036 kb on - strand, within LRK53_RS03100at 725.061 kb on - strand, within LRK53_RS03100at 725.061 kb on - strand, within LRK53_RS03100at 725.061 kb on - strand, within LRK53_RS03100at 725.482 kb on + strand, within LRK53_RS03105at 725.483 kb on - strand, within LRK53_RS03105at 725.483 kb on - strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.572 kb on + strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.573 kb on - strand, within LRK53_RS03105at 725.728 kb on + strand, within LRK53_RS03105at 725.729 kb on - strand, within LRK53_RS03105at 725.729 kb on - strand, within LRK53_RS03105at 726.154 kb on + strandat 726.185 kb on + strandat 726.186 kb on - strandat 726.186 kb on - strandat 726.186 kb on - strandat 726.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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723,584 + LRK53_RS03095 0.75 -1.2
723,741 - LRK53_RS03095 0.85 -0.8
723,920 - -0.4
724,111 + -1.6
724,111 + +0.5
724,111 + -1.1
724,111 + -0.5
724,112 - -0.8
724,554 - LRK53_RS03100 0.26 -0.9
724,674 - LRK53_RS03100 0.37 +1.2
724,780 + LRK53_RS03100 0.47 +0.3
724,892 + LRK53_RS03100 0.57 -0.4
724,892 + LRK53_RS03100 0.57 -1.6
724,892 + LRK53_RS03100 0.57 -1.4
724,892 + LRK53_RS03100 0.57 -0.9
724,892 + LRK53_RS03100 0.57 -1.3
724,893 - LRK53_RS03100 0.57 -1.0
724,893 - LRK53_RS03100 0.57 -1.2
724,893 - LRK53_RS03100 0.57 +0.9
724,893 - LRK53_RS03100 0.57 -1.1
724,893 - LRK53_RS03100 0.57 -0.8
724,893 - LRK53_RS03100 0.57 -1.7
724,893 - LRK53_RS03100 0.57 -1.1
724,893 - LRK53_RS03100 0.57 -0.4
724,943 + LRK53_RS03100 0.62 -0.0
724,943 + LRK53_RS03100 0.62 -3.0
724,943 + LRK53_RS03100 0.62 -2.6
724,943 + LRK53_RS03100 0.62 -1.8
724,943 + LRK53_RS03100 0.62 -2.0
724,943 + LRK53_RS03100 0.62 -1.1
724,943 + LRK53_RS03100 0.62 +0.5
724,943 + LRK53_RS03100 0.62 -1.7
724,944 - LRK53_RS03100 0.62 -0.8
724,944 - LRK53_RS03100 0.62 +0.4
724,944 - LRK53_RS03100 0.62 +1.2
724,944 - LRK53_RS03100 0.62 -1.4
724,944 - LRK53_RS03100 0.62 -3.3
724,944 - LRK53_RS03100 0.62 -1.4
724,944 - LRK53_RS03100 0.62 -1.1
724,975 + LRK53_RS03100 0.64 -1.0
724,975 + LRK53_RS03100 0.64 -1.8
724,975 + LRK53_RS03100 0.64 -0.6
724,975 + LRK53_RS03100 0.64 -1.3
724,975 + LRK53_RS03100 0.64 -1.1
724,975 + LRK53_RS03100 0.64 -0.8
724,975 + LRK53_RS03100 0.64 -1.4
724,975 + LRK53_RS03100 0.64 +1.2
724,975 + LRK53_RS03100 0.64 +0.9
724,975 + LRK53_RS03100 0.64 -0.8
724,975 + LRK53_RS03100 0.64 -1.8
724,975 + LRK53_RS03100 0.64 -1.6
724,975 + LRK53_RS03100 0.64 -2.4
724,976 - LRK53_RS03100 0.65 -0.1
724,976 - LRK53_RS03100 0.65 -1.6
724,976 - LRK53_RS03100 0.65 +0.6
724,976 - LRK53_RS03100 0.65 -1.5
724,976 - LRK53_RS03100 0.65 -1.8
724,976 - LRK53_RS03100 0.65 -0.8
724,976 - LRK53_RS03100 0.65 -0.4
724,976 - LRK53_RS03100 0.65 -0.4
724,976 - LRK53_RS03100 0.65 -0.6
724,976 - LRK53_RS03100 0.65 +0.2
724,976 - LRK53_RS03100 0.65 +0.2
724,976 - LRK53_RS03100 0.65 +0.2
724,976 - LRK53_RS03100 0.65 +1.2
725,035 + LRK53_RS03100 0.70 -1.4
725,035 + LRK53_RS03100 0.70 -0.8
725,035 + LRK53_RS03100 0.70 -1.1
725,036 - LRK53_RS03100 0.70 -1.8
725,036 - LRK53_RS03100 0.70 -2.4
725,036 - LRK53_RS03100 0.70 +0.6
725,061 - LRK53_RS03100 0.72 -0.2
725,061 - LRK53_RS03100 0.72 +0.9
725,061 - LRK53_RS03100 0.72 -2.6
725,482 + LRK53_RS03105 0.19 +0.6
725,483 - LRK53_RS03105 0.19 -1.8
725,483 - LRK53_RS03105 0.19 -1.8
725,572 + LRK53_RS03105 0.33 -1.2
725,572 + LRK53_RS03105 0.33 +0.8
725,572 + LRK53_RS03105 0.33 -0.4
725,572 + LRK53_RS03105 0.33 -2.0
725,572 + LRK53_RS03105 0.33 -1.4
725,572 + LRK53_RS03105 0.33 -2.2
725,572 + LRK53_RS03105 0.33 +1.2
725,572 + LRK53_RS03105 0.33 -2.0
725,572 + LRK53_RS03105 0.33 -1.4
725,572 + LRK53_RS03105 0.33 -2.4
725,572 + LRK53_RS03105 0.33 -1.1
725,572 + LRK53_RS03105 0.33 -2.9
725,572 + LRK53_RS03105 0.33 +1.2
725,573 - LRK53_RS03105 0.33 -0.4
725,573 - LRK53_RS03105 0.33 -0.7
725,573 - LRK53_RS03105 0.33 -0.5
725,573 - LRK53_RS03105 0.33 -0.5
725,573 - LRK53_RS03105 0.33 +1.2
725,573 - LRK53_RS03105 0.33 +0.9
725,573 - LRK53_RS03105 0.33 -0.8
725,573 - LRK53_RS03105 0.33 +2.2
725,573 - LRK53_RS03105 0.33 -0.1
725,573 - LRK53_RS03105 0.33 -1.5
725,573 - LRK53_RS03105 0.33 -0.4
725,573 - LRK53_RS03105 0.33 -1.5
725,573 - LRK53_RS03105 0.33 -2.0
725,573 - LRK53_RS03105 0.33 -0.7
725,573 - LRK53_RS03105 0.33 -2.4
725,573 - LRK53_RS03105 0.33 +0.2
725,573 - LRK53_RS03105 0.33 +0.3
725,573 - LRK53_RS03105 0.33 -0.3
725,728 + LRK53_RS03105 0.57 -0.6
725,729 - LRK53_RS03105 0.57 -0.8
725,729 - LRK53_RS03105 0.57 +0.9
726,154 + -2.9
726,185 + -0.8
726,186 - +0.6
726,186 - +0.2
726,186 - +0.7
726,186 - +1.8

Or see this region's nucleotide sequence