Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02850

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02840 and LRK53_RS02845 are separated by 13 nucleotidesLRK53_RS02845 and LRK53_RS02850 are separated by 336 nucleotidesLRK53_RS02850 and LRK53_RS02855 are separated by 122 nucleotidesLRK53_RS02855 and LRK53_RS02860 overlap by 4 nucleotides LRK53_RS02840: LRK53_RS02840 - dihydroneopterin aldolase, at 658,935 to 659,291 _RS02840 LRK53_RS02845: LRK53_RS02845 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 659,305 to 659,793 _RS02845 LRK53_RS02850: LRK53_RS02850 - response regulator, at 660,130 to 660,564 _RS02850 LRK53_RS02855: LRK53_RS02855 - tetratricopeptide repeat protein, at 660,687 to 661,007 _RS02855 LRK53_RS02860: LRK53_RS02860 - glycosyltransferase family 39 protein, at 661,004 to 662,743 _RS02860 Position (kb) 660 661Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 659.290 kb on - strandat 659.318 kb on - strandat 659.353 kb on + strandat 659.417 kb on - strand, within LRK53_RS02845at 659.596 kb on + strand, within LRK53_RS02845at 659.596 kb on + strand, within LRK53_RS02845at 659.597 kb on - strand, within LRK53_RS02845at 659.597 kb on - strand, within LRK53_RS02845at 659.597 kb on - strand, within LRK53_RS02845at 659.597 kb on - strand, within LRK53_RS02845at 660.217 kb on + strand, within LRK53_RS02850at 660.217 kb on + strand, within LRK53_RS02850at 660.218 kb on - strand, within LRK53_RS02850at 660.218 kb on - strand, within LRK53_RS02850at 660.300 kb on - strand, within LRK53_RS02850at 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.568 kb on + strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.569 kb on - strandat 660.688 kb on + strandat 660.689 kb on - strandat 660.689 kb on - strandat 660.850 kb on + strand, within LRK53_RS02855at 660.850 kb on + strand, within LRK53_RS02855at 660.850 kb on + strand, within LRK53_RS02855at 660.851 kb on - strand, within LRK53_RS02855at 660.851 kb on - strand, within LRK53_RS02855at 660.851 kb on - strand, within LRK53_RS02855at 661.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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659,290 - -1.8
659,318 - -2.6
659,353 + -0.8
659,417 - LRK53_RS02845 0.23 -0.4
659,596 + LRK53_RS02845 0.60 -0.2
659,596 + LRK53_RS02845 0.60 -1.4
659,597 - LRK53_RS02845 0.60 -0.2
659,597 - LRK53_RS02845 0.60 -1.1
659,597 - LRK53_RS02845 0.60 -2.0
659,597 - LRK53_RS02845 0.60 -0.2
660,217 + LRK53_RS02850 0.20 -0.4
660,217 + LRK53_RS02850 0.20 -0.4
660,218 - LRK53_RS02850 0.20 +3.8
660,218 - LRK53_RS02850 0.20 -2.6
660,300 - LRK53_RS02850 0.39 +0.2
660,568 + +0.1
660,568 + +2.2
660,568 + +0.5
660,568 + -0.4
660,568 + +0.3
660,568 + +2.0
660,568 + +0.1
660,568 + +1.4
660,568 + -1.2
660,568 + -0.4
660,568 + -1.0
660,568 + -0.1
660,568 + -0.1
660,569 - +3.2
660,569 - -1.8
660,569 - -1.8
660,569 - -0.1
660,569 - -1.8
660,569 - -1.1
660,569 - +0.2
660,569 - -1.1
660,569 - +0.9
660,569 - -0.7
660,569 - +1.1
660,569 - -0.5
660,569 - -0.4
660,569 - -0.0
660,688 + -1.2
660,689 - +0.5
660,689 - -2.0
660,850 + LRK53_RS02855 0.51 -0.4
660,850 + LRK53_RS02855 0.51 -0.4
660,850 + LRK53_RS02855 0.51 -2.4
660,851 - LRK53_RS02855 0.51 +1.0
660,851 - LRK53_RS02855 0.51 -1.8
660,851 - LRK53_RS02855 0.51 -1.1
661,042 - +1.2

Or see this region's nucleotide sequence