Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02265

Experiment: NLDM_defined low phosphorus; midlog

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02255 and LRK53_RS02260 are separated by 148 nucleotidesLRK53_RS02260 and LRK53_RS02265 overlap by 4 nucleotidesLRK53_RS02265 and LRK53_RS02270 overlap by 4 nucleotides LRK53_RS02255: LRK53_RS02255 - 3-oxoacyl-ACP reductase FabG, at 523,094 to 523,831 _RS02255 LRK53_RS02260: LRK53_RS02260 - glycosyltransferase family 2 protein, at 523,980 to 524,765 _RS02260 LRK53_RS02265: LRK53_RS02265 - beta-ketoacyl synthase chain length factor, at 524,762 to 525,556 _RS02265 LRK53_RS02270: LRK53_RS02270 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 525,553 to 526,746 _RS02270 Position (kb) 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 523.787 kb on + strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.788 kb on - strandat 523.872 kb on + strandat 523.872 kb on + strandat 523.872 kb on + strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.873 kb on - strandat 523.961 kb on + strandat 523.961 kb on + strandat 524.059 kb on + strand, within LRK53_RS02260at 524.060 kb on - strand, within LRK53_RS02260at 524.080 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.104 kb on + strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.105 kb on - strand, within LRK53_RS02260at 524.167 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.521 kb on + strand, within LRK53_RS02260at 524.522 kb on - strand, within LRK53_RS02260at 524.522 kb on - strand, within LRK53_RS02260at 524.522 kb on - strand, within LRK53_RS02260at 524.522 kb on - strand, within LRK53_RS02260at 524.522 kb on - strand, within LRK53_RS02260at 524.785 kb on + strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.786 kb on - strandat 524.800 kb on + strandat 524.800 kb on + strandat 524.801 kb on - strandat 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.276 kb on + strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.277 kb on - strand, within LRK53_RS02265at 525.539 kb on + strandat 525.540 kb on - strandat 525.893 kb on + strand, within LRK53_RS02270at 525.893 kb on + strand, within LRK53_RS02270at 525.893 kb on + strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.894 kb on - strand, within LRK53_RS02270at 525.989 kb on + strand, within LRK53_RS02270at 525.989 kb on + strand, within LRK53_RS02270at 525.989 kb on + strand, within LRK53_RS02270at 525.990 kb on - strand, within LRK53_RS02270

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined low phosphorus; midlog
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523,787 + -0.3
523,788 - -0.0
523,788 - -1.0
523,788 - -2.3
523,788 - -0.0
523,788 - +0.4
523,788 - +1.0
523,788 - -0.8
523,788 - -0.3
523,872 + -2.3
523,872 + +1.0
523,872 + -0.8
523,873 - +0.4
523,873 - -0.0
523,873 - +0.7
523,873 - -0.2
523,873 - -0.6
523,873 - +0.4
523,873 - -1.8
523,873 - -0.5
523,873 - -0.3
523,873 - +0.7
523,961 + -0.0
523,961 + -0.0
524,059 + LRK53_RS02260 0.10 +0.2
524,060 - LRK53_RS02260 0.10 -2.0
524,080 + LRK53_RS02260 0.13 +1.2
524,104 + LRK53_RS02260 0.16 +0.8
524,104 + LRK53_RS02260 0.16 +0.5
524,104 + LRK53_RS02260 0.16 +0.1
524,104 + LRK53_RS02260 0.16 -0.0
524,104 + LRK53_RS02260 0.16 -0.3
524,104 + LRK53_RS02260 0.16 -0.6
524,104 + LRK53_RS02260 0.16 +1.0
524,104 + LRK53_RS02260 0.16 -2.5
524,104 + LRK53_RS02260 0.16 +0.6
524,104 + LRK53_RS02260 0.16 +0.6
524,104 + LRK53_RS02260 0.16 -0.1
524,104 + LRK53_RS02260 0.16 +0.6
524,104 + LRK53_RS02260 0.16 -1.4
524,104 + LRK53_RS02260 0.16 +2.0
524,105 - LRK53_RS02260 0.16 -0.4
524,105 - LRK53_RS02260 0.16 -1.5
524,105 - LRK53_RS02260 0.16 -1.0
524,105 - LRK53_RS02260 0.16 -2.4
524,105 - LRK53_RS02260 0.16 -1.0
524,105 - LRK53_RS02260 0.16 -1.1
524,105 - LRK53_RS02260 0.16 -0.6
524,105 - LRK53_RS02260 0.16 +0.5
524,105 - LRK53_RS02260 0.16 -0.4
524,105 - LRK53_RS02260 0.16 +1.4
524,105 - LRK53_RS02260 0.16 -0.0
524,105 - LRK53_RS02260 0.16 +1.0
524,105 - LRK53_RS02260 0.16 -2.3
524,105 - LRK53_RS02260 0.16 +1.6
524,105 - LRK53_RS02260 0.16 +0.6
524,105 - LRK53_RS02260 0.16 -1.0
524,167 + LRK53_RS02260 0.24 +2.6
524,521 + LRK53_RS02260 0.69 -0.8
524,521 + LRK53_RS02260 0.69 -0.5
524,521 + LRK53_RS02260 0.69 -2.0
524,521 + LRK53_RS02260 0.69 +0.4
524,521 + LRK53_RS02260 0.69 -2.0
524,521 + LRK53_RS02260 0.69 -0.8
524,521 + LRK53_RS02260 0.69 -1.6
524,521 + LRK53_RS02260 0.69 -0.8
524,522 - LRK53_RS02260 0.69 +0.1
524,522 - LRK53_RS02260 0.69 +1.0
524,522 - LRK53_RS02260 0.69 +3.0
524,522 - LRK53_RS02260 0.69 +1.0
524,522 - LRK53_RS02260 0.69 -1.4
524,785 + +3.3
524,786 - -1.6
524,786 - -2.5
524,786 - +0.5
524,800 + -1.0
524,800 + -0.2
524,801 - -0.3
525,276 + LRK53_RS02265 0.65 -0.6
525,276 + LRK53_RS02265 0.65 -2.6
525,276 + LRK53_RS02265 0.65 -0.6
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 -0.5
525,276 + LRK53_RS02265 0.65 +0.3
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 +0.7
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 -0.7
525,276 + LRK53_RS02265 0.65 -1.0
525,276 + LRK53_RS02265 0.65 -0.0
525,276 + LRK53_RS02265 0.65 -0.6
525,276 + LRK53_RS02265 0.65 -0.0
525,277 - LRK53_RS02265 0.65 -0.4
525,277 - LRK53_RS02265 0.65 +0.2
525,277 - LRK53_RS02265 0.65 -1.2
525,277 - LRK53_RS02265 0.65 -2.8
525,277 - LRK53_RS02265 0.65 -1.6
525,277 - LRK53_RS02265 0.65 +2.0
525,277 - LRK53_RS02265 0.65 +1.0
525,277 - LRK53_RS02265 0.65 -0.6
525,277 - LRK53_RS02265 0.65 +0.3
525,277 - LRK53_RS02265 0.65 -1.1
525,277 - LRK53_RS02265 0.65 -1.2
525,277 - LRK53_RS02265 0.65 -0.0
525,277 - LRK53_RS02265 0.65 -1.9
525,277 - LRK53_RS02265 0.65 +2.6
525,277 - LRK53_RS02265 0.65 -2.0
525,277 - LRK53_RS02265 0.65 -1.9
525,277 - LRK53_RS02265 0.65 -1.8
525,277 - LRK53_RS02265 0.65 +0.7
525,277 - LRK53_RS02265 0.65 +0.3
525,277 - LRK53_RS02265 0.65 -0.6
525,277 - LRK53_RS02265 0.65 +1.0
525,277 - LRK53_RS02265 0.65 -0.6
525,277 - LRK53_RS02265 0.65 -0.2
525,277 - LRK53_RS02265 0.65 +1.0
525,277 - LRK53_RS02265 0.65 +1.0
525,277 - LRK53_RS02265 0.65 -2.5
525,539 + -0.3
525,540 - +2.4
525,893 + LRK53_RS02270 0.28 -0.4
525,893 + LRK53_RS02270 0.28 +1.0
525,893 + LRK53_RS02270 0.28 -0.7
525,894 - LRK53_RS02270 0.29 -3.2
525,894 - LRK53_RS02270 0.29 -0.0
525,894 - LRK53_RS02270 0.29 -0.5
525,894 - LRK53_RS02270 0.29 -0.8
525,894 - LRK53_RS02270 0.29 -1.7
525,894 - LRK53_RS02270 0.29 -0.6
525,894 - LRK53_RS02270 0.29 -0.4
525,894 - LRK53_RS02270 0.29 -0.5
525,894 - LRK53_RS02270 0.29 -1.9
525,894 - LRK53_RS02270 0.29 -1.6
525,989 + LRK53_RS02270 0.37 +0.2
525,989 + LRK53_RS02270 0.37 -0.4
525,989 + LRK53_RS02270 0.37 -1.0
525,990 - LRK53_RS02270 0.37 -0.8

Or see this region's nucleotide sequence